pycom05g28380

Pathogenesis-related genes transcriptional activator PTI5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0016284
Physical Location & Seq
Reverse (-)
29125789 .. 29126361
573 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g28380.1

Sequence Viewer

Length: 573 bp
ATGGCTTTACACTTCTCACAACAAAATGAACTCCCATTGAATGAGAATGATTCACAAGATATCGTCATATACCAAGTCCTAAATGAACCCATGTCTCTCATCCCCTCATTGTTGCCACAAAGATACCCAATCAATCGTCAACCAAATCGCCTCGAACCCACAAAGAACATTGGAAAAAAGCACTATAGAGGCGTGAGGAGGCGTCCGTGGGGCAAGTACGCAGCTGAAATCCGTGACTCTGCACGACAAGGTGCGCGTATGTGGCTAGGAACATTTAACACGGCTGAAGAAGCTGCCTTGGCATATGACCGAGCAGCTTTTCGAATGCGTGGTAGTAAGGCCATGCTTAATTTCCCAGCTGAAATTGGGGCTGCATCTTCTTCACCAACATCATCAGTTCATAAAGTCGGGCCAAGTTTTGGTGTAACTTGCAGCTTAAATAGTAAAAACAGTACTACTACTTCAGACTCAAGTGGAAGTTGTAGTACGCTCTCGATTGGGACACCAAGATCGGAATCTGAGACTGAATTAAGTGCTGTGGAGGTACCAAATATGCAGGGTCAGATCATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
AP2

Protein Analysis

191

Amino Acids

20.87

Weight (kDa)

9.23

Isoelectric Point (pI)

57.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 61 - 112 5e-15 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016284)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08290
malus_domestica MD05G1306900.v1.1 MD10G1286300.v1.1
prunus_persica Prupe.4G055500_v2.0.a1
pyrus_communis pycom05g28380
rosa_chinensis RchiOBHm_Chr5g0009711
rosa_laevigata RLG00000031682
rosa_multiflora Rmu_sc0005805.1_g000005
rosa_roxburghii Rroxscaffold_1G00066500
rosa_rugosa Rorug04G0445100
rosa_samantha Rh5AG076600 Rh5BG071800 Rh5CG084400 Rh5DG072400
rosa_wichuraiana Rw5G007060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 544
AccB1I GGYRCC 1 cut(s) 544
AccB7I CCANNNNNTGG 1 cut(s) 419
AccII CGCG 1 cut(s) 256
AcuI CTGAAG 2 cut(s) 306, 447
AcyI GRCGYC 1 cut(s) 202
AfaI GTAC 4 cut(s) 218, 454, 487, 546
AfiI CCNNNNNNNGG 1 cut(s) 419
AgsI TTSAA 1 cut(s) 40
AluBI AGCT 5 cut(s) 224, 293, 317, 359, 435
AluI AGCT 5 cut(s) 224, 293, 317, 359, 435
Alw26I GTCTC 2 cut(s) 99, 515
AoxI GGCC 2 cut(s) 339, 410
ApeKI GCWGC 5 cut(s) 221, 293, 314, 371, 432
Asp718I GGTACC 1 cut(s) 544
AspLEI GCGC 1 cut(s) 256
AspS9I GGNCC 1 cut(s) 410
AsuHPI GGTGA 1 cut(s) 375
AsuII TTCGAA 1 cut(s) 322
BanI GGYRCC 1 cut(s) 544
BarI GAAGNNNNNNTAC 4 cut(s) 445, 469, 477, 501
BbvI GCAGC 5 cut(s) 233, 280, 326, 358, 444
BceAI ACGGC 1 cut(s) 297
BcoDI GTCTC 2 cut(s) 99, 515
BfaI CTAG 2 cut(s) 266, 571
BfmI CTRYAG 1 cut(s) 184
BisI GCNGC 5 cut(s) 222, 294, 315, 372, 433
BlsI GCNGC 5 cut(s) 223, 295, 316, 373, 434
BmcAI AGTACT 1 cut(s) 454
BmgT120I GGNCC 1 cut(s) 410
BmiI GGNNCC 1 cut(s) 546
BmsI GCATC 1 cut(s) 383
Bpu14I TTCGAA 1 cut(s) 322
BpuEI CTTGAG 1 cut(s) 454
BsaBI GATNNNNATC 1 cut(s) 514
BsaHI GRCGYC 1 cut(s) 202
BsaJI CCNNGG 2 cut(s) 206, 297
Bsc4I CCNNNNNNNGG 1 cut(s) 419
Bse8I GATNNNNATC 1 cut(s) 514
BseDI CCNNGG 2 cut(s) 206, 297
BseGI GGATG 1 cut(s) 99
BseJI GATNNNNATC 1 cut(s) 514
BseLI CCNNNNNNNGG 1 cut(s) 419
BseMII CTCAG 1 cut(s) 510
BseRI GAGGAG 1 cut(s) 211
BseXI GCAGC 5 cut(s) 233, 280, 326, 358, 444
BseYI CCCAGC 1 cut(s) 355
BsgI GTGCAG 1 cut(s) 225
Bsh1236I CGCG 1 cut(s) 256
BshFI GGCC 2 cut(s) 341, 412
BshNI GGYRCC 1 cut(s) 544
BslFI GGGAC 1 cut(s) 514
BslI CCNNNNNNNGG 1 cut(s) 419
BsmAI GTCTC 2 cut(s) 99, 515
BsmFI GGGAC 1 cut(s) 514
BsmI GAATGC 1 cut(s) 330
BsnI GGCC 2 cut(s) 341, 412
Bsp119I TTCGAA 1 cut(s) 322
Bsp143I GATC 2 cut(s) 509, 564
BspANI GGCC 2 cut(s) 341, 412
BspCNI CTCAG 1 cut(s) 511
BspFNI CGCG 1 cut(s) 256
BspLI GGNNCC 1 cut(s) 546
BspT104I TTCGAA 1 cut(s) 322
BspT107I GGYRCC 1 cut(s) 544
BssECI CCNNGG 2 cut(s) 206, 297
BssMI GATC 2 cut(s) 509, 564
BssNI GRCGYC 1 cut(s) 202
BssT1I CCWWGG 1 cut(s) 297
Bst4CI ACNGT 1 cut(s) 452
BstACI GRCGYC 1 cut(s) 202
BstBI TTCGAA 1 cut(s) 322
BstDEI CTNAG 1 cut(s) 519
BstDSI CCRYGG 1 cut(s) 206
BstF5I GGATG 1 cut(s) 99
BstFNI CGCG 1 cut(s) 256
BstHHI GCGC 1 cut(s) 256
BstKTI GATC 2 cut(s) 512, 567
BstMAI GTCTC 2 cut(s) 99, 515
BstMBI GATC 2 cut(s) 509, 564
BstMWI GCNNNNNNNGC 3 cut(s) 262, 290, 299
BstSFI CTRYAG 1 cut(s) 184
BstUI CGCG 1 cut(s) 256
BstV1I GCAGC 5 cut(s) 233, 280, 326, 358, 444
BsuRI GGCC 2 cut(s) 341, 412
BtgI CCRYGG 1 cut(s) 206
BtsCI GGATG 1 cut(s) 99
CfoI GCGC 1 cut(s) 256
Cfr13I GGNCC 1 cut(s) 410
CseI GACGC 1 cut(s) 191
Csp6I GTAC 4 cut(s) 217, 453, 486, 545
CviAII CATG 2 cut(s) 91, 343
CviQI GTAC 4 cut(s) 217, 453, 486, 545
DdeI CTNAG 1 cut(s) 519
DpnI GATC 2 cut(s) 511, 566
DpnII GATC 2 cut(s) 509, 564
Eco130I CCWWGG 1 cut(s) 297
Eco32I GATATC 1 cut(s) 61
Eco57I CTGAAG 2 cut(s) 306, 447
EcoRV GATATC 1 cut(s) 61
EcoT14I CCWWGG 1 cut(s) 297
ErhI CCWWGG 1 cut(s) 297
FaeI CATG 2 cut(s) 94, 346
FaqI GGGAC 1 cut(s) 514
FatI CATG 2 cut(s) 90, 342
FauNDI CATATG 1 cut(s) 304
Fnu4HI GCNGC 5 cut(s) 222, 294, 315, 372, 433
FokI GGATG 1 cut(s) 86
Fsp4HI GCNGC 5 cut(s) 222, 294, 315, 372, 433
FspBI CTAG 2 cut(s) 266, 571
GlaI GCGC 1 cut(s) 255
GluI GCNGC 5 cut(s) 222, 294, 315, 372, 433
GsaI CCCAGC 1 cut(s) 359
HaeIII GGCC 2 cut(s) 341, 412
HgaI GACGC 1 cut(s) 191
HhaI GCGC 1 cut(s) 256
Hin1I GRCGYC 1 cut(s) 202
Hin1II CATG 2 cut(s) 94, 346
Hin6I GCGC 1 cut(s) 254
HinP1I GCGC 1 cut(s) 254
HincII GTYRAC 1 cut(s) 140
HindII GTYRAC 1 cut(s) 140
HinfI GANTC 4 cut(s) 50, 236, 467, 515
HphI GGTGA 1 cut(s) 375
Hpy166II GTNNAC 1 cut(s) 140
Hpy188I TCNGA 4 cut(s) 466, 514, 520, 564
Hpy188III TCNNGA 1 cut(s) 493
Hpy8I GTNNAC 1 cut(s) 140
HpyCH4III ACNGT 1 cut(s) 452
HpyCH4V TGCA 4 cut(s) 242, 374, 432, 556
HpyF10VI GCNNNNNNNGC 3 cut(s) 262, 290, 299
HpyF3I CTNAG 1 cut(s) 519
Hsp92I GRCGYC 1 cut(s) 202
Hsp92II CATG 2 cut(s) 94, 346
HspAI GCGC 1 cut(s) 254
KpnI GGTACC 1 cut(s) 548
Kzo9I GATC 2 cut(s) 509, 564
LpnPI CCDG 2 cut(s) 369, 542
Lsp1109I GCAGC 5 cut(s) 233, 280, 326, 358, 444
LweI GCATC 1 cut(s) 383
MaeI CTAG 2 cut(s) 266, 571
MaeIII GTNAC 2 cut(s) 233, 424
MalI GATC 2 cut(s) 511, 566
MboI GATC 2 cut(s) 509, 564
MboII GAAGA 3 cut(s) 299, 369, 372
MluCI AATT 3 cut(s) 349, 363, 527
MlyI GAGTC 2 cut(s) 230, 461
MnlI CCTC 6 cut(s) 115, 161, 182, 189, 192, 535
MseI TTAA 4 cut(s) 276, 348, 437, 530
MspA1I CMGCKG 2 cut(s) 224, 359
Mva1269I GAATGC 1 cut(s) 330
MvnI CGCG 1 cut(s) 256
MwoI GCNNNNNNNGC 3 cut(s) 262, 290, 299
NdeI CATATG 1 cut(s) 304
NdeII GATC 2 cut(s) 509, 564
NlaIII CATG 2 cut(s) 94, 346
NlaIV GGNNCC 1 cut(s) 546
NmuCI GTSAC 1 cut(s) 233
NspV TTCGAA 1 cut(s) 322
PctI GAATGC 1 cut(s) 330
PfeI GAWTC 2 cut(s) 50, 515
PflMI CCANNNNNTGG 1 cut(s) 419
PkrI GCNGC 5 cut(s) 223, 295, 316, 373, 434
PleI GAGTC 2 cut(s) 230, 461
PpsI GAGTC 2 cut(s) 230, 461
PspFI CCCAGC 1 cut(s) 355
PspN4I GGNNCC 1 cut(s) 546
PspPI GGNCC 1 cut(s) 410
PvuII CAGCTG 2 cut(s) 224, 359
RsaI GTAC 4 cut(s) 218, 454, 487, 546
RsaNI GTAC 4 cut(s) 217, 453, 486, 545
SaqAI TTAA 4 cut(s) 276, 348, 437, 530
SatI GCNGC 5 cut(s) 222, 294, 315, 372, 433
Sau3AI GATC 2 cut(s) 509, 564
Sau96I GGNCC 1 cut(s) 410
ScaI AGTACT 1 cut(s) 454
SchI GAGTC 2 cut(s) 230, 461
SetI ASST 7 cut(s) 226, 253, 295, 319, 361, 437, 546
SfaNI GCATC 1 cut(s) 383
SfcI CTRYAG 1 cut(s) 184
SfuI TTCGAA 1 cut(s) 322
SmlI CTYRAG 1 cut(s) 469
SmoI CTYRAG 1 cut(s) 469
Sse9I AATT 3 cut(s) 349, 363, 527
SspMI CTAG 2 cut(s) 266, 571
StyI CCWWGG 1 cut(s) 297
TaaI ACNGT 1 cut(s) 452
TaqI TCGA 3 cut(s) 153, 322, 494
TaqII GACCGA 1 cut(s) 324
TasI AATT 3 cut(s) 349, 363, 527
TatI WGTACW 1 cut(s) 452
TfiI GAWTC 2 cut(s) 50, 515
Tru1I TTAA 4 cut(s) 276, 348, 437, 530
Tru9I TTAA 4 cut(s) 276, 348, 437, 530
TseFI GTSAC 1 cut(s) 233
TseI GCWGC 5 cut(s) 221, 293, 314, 371, 432
Tsp45I GTSAC 1 cut(s) 233
TspDTI ATGAA 3 cut(s) 42, 99, 389
TspGWI ACGGA 2 cut(s) 195, 221
Van91I CCANNNNNTGG 1 cut(s) 419
XspI CTAG 2 cut(s) 266, 571
ZrmI AGTACT 1 cut(s) 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.