Prupe.4G055500_v2.0.a1

Pathogenesis-related genes transcriptional activator PTI5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0016284
Physical Location & Seq
Forward (+)
2667165 .. 2668806
1642 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G055500.1

Sequence Viewer

Length: 564 bp
ATGGTTTCAGCCTCCACGCAAAATGAGCTACCATTGAATGAGAATGACTCACAAGACATGGTCATATACCAAGTCCTAAATGAAGCCATGGTTATCAACCCCTCATTCTTGCCACAAAGACACCAAATAAACCACCAACCAAATGGCCTCGAACCCTCTAAGAACATTGGGAAGAAGCACTATAGAGGCGTGAGGCGGCGCCCTTGGGGCAAATATGCTGCTGAAATCCGTGACTCTGCACGACACGGTGCGCGTGTATGGTTAGGAACATTTAGCACAGCCGAAGAAGCTGCCTTGGCATACGATCGAGCAGCTTTTAGAATGAGAGGTACTAAGGCCCTGCTTAATTTCCCACCTGATGTAGTGGCTGCATCATCTTCGCCATCGTCTTCAATTCATAGAGTTAGGCCAAGTTTTAGTGTACCCTGCAGCTCAAATAGTAATAGCACAACTTCAGACTCAAGTGGCAGCTCTAGTTTGCTTTCAATTGGGACACCAAGATCAGAATCTCAGAGCAACACAAGTAATGTGGAGGCACAAAATACGCAGGGTCCAATCATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
AP2

Protein Analysis

188

Amino Acids

20.37

Weight (kDa)

9.51

Isoelectric Point (pI)

56.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016284)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08290
malus_domestica MD05G1306900.v1.1 MD10G1286300.v1.1
prunus_persica Prupe.4G055500_v2.0.a1
pyrus_communis pycom05g28380
rosa_chinensis RchiOBHm_Chr5g0009711
rosa_laevigata RLG00000031682
rosa_multiflora Rmu_sc0005805.1_g000005
rosa_roxburghii Rroxscaffold_1G00066500
rosa_rugosa Rorug04G0445100
rosa_samantha Rh5AG076600 Rh5BG071800 Rh5CG084400 Rh5DG072400
rosa_wichuraiana Rw5G007060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 198
AccII CGCG 1 cut(s) 253
AciI CCGC 1 cut(s) 196
AcuI CTGAAG 1 cut(s) 438
AcyI GRCGYC 1 cut(s) 199
AfaI GTAC 2 cut(s) 331, 423
AgsI TTSAA 3 cut(s) 37, 393, 486
AluBI AGCT 5 cut(s) 28, 290, 314, 432, 471
AluI AGCT 5 cut(s) 28, 290, 314, 432, 471
AoxI GGCC 3 cut(s) 145, 336, 407
ApeKI GCWGC 6 cut(s) 218, 290, 311, 368, 429, 468
AspLEI GCGC 2 cut(s) 201, 253
AspS9I GGNCC 2 cut(s) 337, 551
AvaII GGWCC 1 cut(s) 551
BanI GGYRCC 1 cut(s) 198
BbsI GAAGAC 1 cut(s) 381
BbvI GCAGC 6 cut(s) 205, 277, 323, 355, 441, 480
BccI CCATC 1 cut(s) 391
BcgI CGANNNNNNTGC 4 cut(s) 272, 306, 360, 394
BfaI CTAG 2 cut(s) 474, 562
BfmI CTRYAG 2 cut(s) 181, 427
BfoI RGCGCY 1 cut(s) 202
BglI GCCNNNNNGGC 1 cut(s) 207
BisI GCNGC 7 cut(s) 197, 219, 291, 312, 369, 430, 469
BlsI GCNGC 7 cut(s) 198, 220, 292, 313, 370, 431, 470
Bme18I GGWCC 1 cut(s) 551
BmgT120I GGNCC 2 cut(s) 337, 551
BmiI GGNNCC 2 cut(s) 200, 552
BmsI GCATC 1 cut(s) 380
BpiI GAAGAC 1 cut(s) 381
BplI GAGNNNNNCTC 2 cut(s) 32, 64
BpuEI CTTGAG 1 cut(s) 445
BsaBI GATNNNNATC 1 cut(s) 505
BsaHI GRCGYC 1 cut(s) 199
BsaJI CCNNGG 3 cut(s) 87, 203, 294
Bse8I GATNNNNATC 1 cut(s) 505
BseDI CCNNGG 3 cut(s) 87, 203, 294
BseJI GATNNNNATC 1 cut(s) 505
BseMII CTCAG 1 cut(s) 524
BseXI GCAGC 6 cut(s) 205, 277, 323, 355, 441, 480
BsgI GTGCAG 1 cut(s) 222
Bsh1236I CGCG 1 cut(s) 253
Bsh1285I CGRYCG 1 cut(s) 307
BshFI GGCC 3 cut(s) 147, 338, 409
BshNI GGYRCC 1 cut(s) 198
BsiEI CGRYCG 1 cut(s) 307
BslFI GGGAC 1 cut(s) 505
BsmFI GGGAC 1 cut(s) 505
BsnI GGCC 3 cut(s) 147, 338, 409
Bsp143I GATC 2 cut(s) 304, 500
Bsp19I CCATGG 1 cut(s) 87
BspACI CCGC 1 cut(s) 196
BspANI GGCC 3 cut(s) 147, 338, 409
BspCNI CTCAG 1 cut(s) 523
BspFNI CGCG 1 cut(s) 253
BspLI GGNNCC 2 cut(s) 200, 552
BspMAI CTGCAG 1 cut(s) 431
BspT107I GGYRCC 1 cut(s) 198
BssECI CCNNGG 3 cut(s) 87, 203, 294
BssMI GATC 2 cut(s) 304, 500
BssNI GRCGYC 1 cut(s) 199
BssT1I CCWWGG 3 cut(s) 87, 203, 294
Bst4CI ACNGT 1 cut(s) 248
BstACI GRCGYC 1 cut(s) 199
BstDEI CTNAG 3 cut(s) 159, 333, 510
BstDSI CCRYGG 1 cut(s) 87
BstFNI CGCG 1 cut(s) 253
BstH2I RGCGCY 1 cut(s) 202
BstHHI GCGC 2 cut(s) 201, 253
BstKTI GATC 2 cut(s) 307, 503
BstMBI GATC 2 cut(s) 304, 500
BstMCI CGRYCG 1 cut(s) 307
BstMWI GCNNNNNNNGC 4 cut(s) 25, 207, 287, 296
BstSFI CTRYAG 2 cut(s) 181, 427
BstUI CGCG 1 cut(s) 253
BstV1I GCAGC 6 cut(s) 205, 277, 323, 355, 441, 480
BstV2I GAAGAC 1 cut(s) 381
BstXI CCANNNNNNTGG 1 cut(s) 143
BsuRI GGCC 3 cut(s) 147, 338, 409
BtgI CCRYGG 1 cut(s) 87
CfoI GCGC 2 cut(s) 201, 253
Cfr13I GGNCC 2 cut(s) 337, 551
Csp6I GTAC 2 cut(s) 330, 422
CspCI CAANNNNNGTGG 2 cut(s) 510, 545
CviAII CATG 2 cut(s) 58, 88
CviQI GTAC 2 cut(s) 330, 422
DdeI CTNAG 3 cut(s) 159, 333, 510
DinI GGCGCC 1 cut(s) 200
DpnI GATC 2 cut(s) 306, 502
DpnII GATC 2 cut(s) 304, 500
Eco130I CCWWGG 3 cut(s) 87, 203, 294
Eco47I GGWCC 1 cut(s) 551
Eco57I CTGAAG 1 cut(s) 438
EcoO109I RGGNCCY 1 cut(s) 337
EcoT14I CCWWGG 3 cut(s) 87, 203, 294
EgeI GGCGCC 1 cut(s) 200
EheI GGCGCC 1 cut(s) 200
ErhI CCWWGG 3 cut(s) 87, 203, 294
FaeI CATG 2 cut(s) 61, 91
FaiI YATR 9 cut(s) 59, 65, 67, 89, 183, 216, 259, 301, 399
FaqI GGGAC 1 cut(s) 505
FatI CATG 2 cut(s) 57, 87
Fnu4HI GCNGC 7 cut(s) 197, 219, 291, 312, 369, 430, 469
Fsp4HI GCNGC 7 cut(s) 197, 219, 291, 312, 369, 430, 469
FspBI CTAG 2 cut(s) 474, 562
GlaI GCGC 2 cut(s) 200, 252
GluI GCNGC 7 cut(s) 197, 219, 291, 312, 369, 430, 469
HaeII RGCGCY 1 cut(s) 202
HaeIII GGCC 3 cut(s) 147, 338, 409
HhaI GCGC 2 cut(s) 201, 253
Hin1I GRCGYC 1 cut(s) 199
Hin1II CATG 2 cut(s) 61, 91
Hin6I GCGC 2 cut(s) 199, 251
HinP1I GCGC 2 cut(s) 199, 251
HinfI GANTC 4 cut(s) 47, 233, 458, 506
Hpy166II GTNNAC 1 cut(s) 422
Hpy188I TCNGA 3 cut(s) 457, 505, 513
Hpy8I GTNNAC 1 cut(s) 422
HpyCH4III ACNGT 1 cut(s) 248
HpyCH4V TGCA 3 cut(s) 239, 371, 429
HpyF10VI GCNNNNNNNGC 4 cut(s) 25, 207, 287, 296
HpyF3I CTNAG 3 cut(s) 159, 333, 510
Hsp92I GRCGYC 1 cut(s) 199
Hsp92II CATG 2 cut(s) 61, 91
HspAI GCGC 2 cut(s) 199, 251
KasI GGCGCC 1 cut(s) 198
Kzo9I GATC 2 cut(s) 304, 500
LpnPI CCDG 4 cut(s) 353, 369, 439, 533
Lsp1109I GCAGC 6 cut(s) 205, 277, 323, 355, 441, 480
LweI GCATC 1 cut(s) 380
MaeI CTAG 2 cut(s) 474, 562
MaeIII GTNAC 1 cut(s) 230
MalI GATC 2 cut(s) 306, 502
MboI GATC 2 cut(s) 304, 500
MboII GAAGA 4 cut(s) 184, 296, 369, 381
MfeI CAATTG 1 cut(s) 486
MluCI AATT 3 cut(s) 346, 393, 486
Mly113I GGCGCC 1 cut(s) 199
MlyI GAGTC 3 cut(s) 41, 227, 452
MnlI CCTC 8 cut(s) 22, 112, 158, 166, 179, 186, 320, 526
MseI TTAA 1 cut(s) 345
MunI CAATTG 1 cut(s) 486
MvnI CGCG 1 cut(s) 253
MwoI GCNNNNNNNGC 4 cut(s) 25, 207, 287, 296
NarI GGCGCC 1 cut(s) 199
NcoI CCATGG 1 cut(s) 87
NdeII GATC 2 cut(s) 304, 500
NlaIII CATG 2 cut(s) 61, 91
NlaIV GGNNCC 2 cut(s) 200, 552
NmuCI GTSAC 1 cut(s) 230
PfeI GAWTC 1 cut(s) 506
PflFI GACNNNGTC 1 cut(s) 59
PkrI GCNGC 7 cut(s) 198, 220, 292, 313, 370, 431, 470
Ple19I CGATCG 1 cut(s) 307
PleI GAGTC 3 cut(s) 41, 227, 452
PluTI GGCGCC 1 cut(s) 202
PpsI GAGTC 3 cut(s) 41, 227, 452
PspN4I GGNNCC 2 cut(s) 200, 552
PspPI GGNCC 2 cut(s) 337, 551
PstI CTGCAG 1 cut(s) 431
PsyI GACNNNGTC 1 cut(s) 59
PvuI CGATCG 1 cut(s) 307
RsaI GTAC 2 cut(s) 331, 423
RsaNI GTAC 2 cut(s) 330, 422
SaqAI TTAA 1 cut(s) 345
SatI GCNGC 7 cut(s) 197, 219, 291, 312, 369, 430, 469
Sau3AI GATC 2 cut(s) 304, 500
Sau96I GGNCC 2 cut(s) 337, 551
SchI GAGTC 3 cut(s) 41, 227, 452
SetI ASST 7 cut(s) 30, 292, 316, 331, 358, 434, 473
SfaNI GCATC 1 cut(s) 380
SfcI CTRYAG 2 cut(s) 181, 427
SfoI GGCGCC 1 cut(s) 200
SinI GGWCC 1 cut(s) 551
SmlI CTYRAG 1 cut(s) 460
SmoI CTYRAG 1 cut(s) 460
Sse9I AATT 3 cut(s) 346, 393, 486
SsiI CCGC 1 cut(s) 196
SspDI GGCGCC 1 cut(s) 198
SspMI CTAG 2 cut(s) 474, 562
StyI CCWWGG 3 cut(s) 87, 203, 294
TaaI ACNGT 1 cut(s) 248
TaqI TCGA 2 cut(s) 150, 307
TasI AATT 3 cut(s) 346, 393, 486
TauI GCSGC 1 cut(s) 199
TfiI GAWTC 1 cut(s) 506
Tru1I TTAA 1 cut(s) 345
Tru9I TTAA 1 cut(s) 345
TseFI GTSAC 1 cut(s) 230
TseI GCWGC 6 cut(s) 218, 290, 311, 368, 429, 468
Tsp45I GTSAC 1 cut(s) 230
TspDTI ATGAA 2 cut(s) 96, 386
TspGWI ACGGA 1 cut(s) 218
Tth111I GACNNNGTC 1 cut(s) 59
VpaK11BI GGWCC 1 cut(s) 551
XcmI CCANNNNNNNNNTGG 1 cut(s) 140
XspI CTAG 2 cut(s) 474, 562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.