RchiOBHm_Chr5g0009711

Pathogenesis-related genes transcriptional activator PTI5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0016284
Physical Location & Seq
Forward (+)
6425720 .. 6426398
679 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29057

Sequence Viewer

Length: 513 bp
ATGGTTTTAGCTTCCCAACATGAGCTTCCATTAAATGAGAACGACTCACAAGACATGGTCATATGTCAAGCTCTAAACGAGGCCATGGCTCTGAATCACTCATCCGTGCCTGAAACACACCAAATCCCGAATCACCAATCGACTTCCAACGGCCTCAAACCCGTAAAGAACCTCGGAAAGAAGCACTATAGAGGCGTGAGGCGTCGTCCATGGGGTAAATACGCAGCTGAAATCCGCGACTCTGCGCGACACGGTGCACGTGTATGGCTAGGCACGTTTAACACGGCCGAAGAAGCTGCCTTGGCATATGATCAAGCTGCTTTTCGAATGAGAGGTAGTAAGGCCATACTCAACTTCCCAGCTGAATTTGTTGCTTCGTTGTCAATTGAAAGAGTTCAGCCAAGTTTATTTAGTGTACCCAGCAATACTAGTACCACTACGGAGGCACCAAAAATATCAGAGTCTGAGAGGAACACAACTACTACGGTAAAGGCACGACATATGCAGCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
AP2

Protein Analysis

170

Amino Acids

18.94

Weight (kDa)

9.6

Isoelectric Point (pI)

49.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 62 - 113 2.1e-16 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016284)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08290
malus_domestica MD05G1306900.v1.1 MD10G1286300.v1.1
prunus_persica Prupe.4G055500_v2.0.a1
pyrus_communis pycom05g28380
rosa_chinensis RchiOBHm_Chr5g0009711
rosa_laevigata RLG00000031682
rosa_multiflora Rmu_sc0005805.1_g000005
rosa_roxburghii Rroxscaffold_1G00066500
rosa_rugosa Rorug04G0445100
rosa_samantha Rh5AG076600 Rh5BG071800 Rh5CG084400 Rh5DG072400
rosa_wichuraiana Rw5G007060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 445
AccII CGCG 2 cut(s) 237, 247
AciI CCGC 1 cut(s) 235
AcoI YGGCCR 1 cut(s) 285
AcsI RAATTY 1 cut(s) 365
AcvI CACGTG 1 cut(s) 260
AcyI GRCGYC 1 cut(s) 202
AfaI GTAC 2 cut(s) 417, 433
AflIII ACRYGT 1 cut(s) 259
AgsI TTSAA 1 cut(s) 389
AhlI ACTAGT 1 cut(s) 428
AjuI GAANNNNNNNTTGG 2 cut(s) 9, 41
AluBI AGCT 7 cut(s) 11, 25, 71, 227, 296, 317, 362
AluI AGCT 7 cut(s) 11, 25, 71, 227, 296, 317, 362
Alw21I GWGCWC 1 cut(s) 259
Alw44I GTGCAC 1 cut(s) 255
AlwNI CAGNNNCTG 1 cut(s) 464
AoxI GGCC 4 cut(s) 81, 151, 285, 342
ApaLI GTGCAC 1 cut(s) 255
ApeKI GCWGC 4 cut(s) 224, 296, 317, 505
ApoI RAATTY 1 cut(s) 365
Asp700I GAANNNNTTC 1 cut(s) 393
AspLEI GCGC 1 cut(s) 247
AsuHPI GGTGA 1 cut(s) 125
AsuII TTCGAA 1 cut(s) 325
BaeGI GKGCMC 1 cut(s) 259
BanI GGYRCC 1 cut(s) 445
BbrPI CACGTG 1 cut(s) 260
Bbv12I GWGCWC 1 cut(s) 259
BbvI GCAGC 3 cut(s) 236, 283, 304
BceAI ACGGC 2 cut(s) 166, 300
BcgI CGANNNNNNTGC 2 cut(s) 278, 312
BclI TGATCA 1 cut(s) 310
BcuI ACTAGT 1 cut(s) 428
BfaI CTAG 2 cut(s) 269, 429
BfmI CTRYAG 1 cut(s) 187
BisI GCNGC 4 cut(s) 225, 297, 318, 506
BlsI GCNGC 4 cut(s) 226, 298, 319, 507
BmiI GGNNCC 1 cut(s) 447
BplI GAGNNNNNCTC 2 cut(s) 29, 61
Bpu14I TTCGAA 1 cut(s) 325
BsaAI YACGTR 1 cut(s) 260
BsaHI GRCGYC 1 cut(s) 202
BsaJI CCNNGG 4 cut(s) 84, 172, 209, 300
BseDI CCNNGG 4 cut(s) 84, 172, 209, 300
BseGI GGATG 1 cut(s) 101
BseMII CTCAG 1 cut(s) 456
BseSI GKGCMC 1 cut(s) 259
BseX3I CGGCCG 1 cut(s) 285
BseXI GCAGC 3 cut(s) 236, 283, 304
BseYI CCCAGC 2 cut(s) 358, 419
Bsh1236I CGCG 2 cut(s) 237, 247
Bsh1285I CGRYCG 1 cut(s) 288
BshFI GGCC 4 cut(s) 83, 153, 287, 344
BshNI GGYRCC 1 cut(s) 445
BsiEI CGRYCG 1 cut(s) 288
BsiHKAI GWGCWC 1 cut(s) 259
BsnI GGCC 4 cut(s) 83, 153, 287, 344
Bsp119I TTCGAA 1 cut(s) 325
Bsp1286I GDGCHC 1 cut(s) 259
Bsp143I GATC 1 cut(s) 310
Bsp19I CCATGG 2 cut(s) 84, 209
BspACI CCGC 1 cut(s) 235
BspANI GGCC 4 cut(s) 83, 153, 287, 344
BspCNI CTCAG 1 cut(s) 457
BspFNI CGCG 2 cut(s) 237, 247
BspLI GGNNCC 1 cut(s) 447
BspT104I TTCGAA 1 cut(s) 325
BspT107I GGYRCC 1 cut(s) 445
BssECI CCNNGG 4 cut(s) 84, 172, 209, 300
BssMI GATC 1 cut(s) 310
BssNI GRCGYC 1 cut(s) 202
BssT1I CCWWGG 3 cut(s) 84, 209, 300
Bst4CI ACNGT 2 cut(s) 254, 487
BstACI GRCGYC 1 cut(s) 202
BstBAI YACGTR 1 cut(s) 260
BstBI TTCGAA 1 cut(s) 325
BstDEI CTNAG 1 cut(s) 465
BstDSI CCRYGG 2 cut(s) 84, 209
BstF5I GGATG 1 cut(s) 101
BstFNI CGCG 2 cut(s) 237, 247
BstHHI GCGC 1 cut(s) 247
BstKTI GATC 1 cut(s) 313
BstMBI GATC 1 cut(s) 310
BstMCI CGRYCG 1 cut(s) 288
BstMWI GCNNNNNNNGC 2 cut(s) 293, 302
BstSFI CTRYAG 1 cut(s) 187
BstSLI GKGCMC 1 cut(s) 259
BstUI CGCG 2 cut(s) 237, 247
BstV1I GCAGC 3 cut(s) 236, 283, 304
BstZI CGGCCG 1 cut(s) 285
BsuRI GGCC 4 cut(s) 83, 153, 287, 344
BtgI CCRYGG 2 cut(s) 84, 209
BtsCI GGATG 1 cut(s) 101
CaiI CAGNNNCTG 1 cut(s) 464
CfoI GCGC 1 cut(s) 247
CseI GACGC 1 cut(s) 191
Csp6I GTAC 2 cut(s) 416, 432
CviAII CATG 4 cut(s) 20, 55, 85, 210
CviQI GTAC 2 cut(s) 416, 432
DdeI CTNAG 1 cut(s) 465
DpnI GATC 1 cut(s) 312
DpnII GATC 1 cut(s) 310
EaeI YGGCCR 1 cut(s) 285
EagI CGGCCG 1 cut(s) 285
EclXI CGGCCG 1 cut(s) 285
Eco130I CCWWGG 3 cut(s) 84, 209, 300
Eco52I CGGCCG 1 cut(s) 285
Eco72I CACGTG 1 cut(s) 260
EcoT14I CCWWGG 3 cut(s) 84, 209, 300
ErhI CCWWGG 3 cut(s) 84, 209, 300
FaeI CATG 4 cut(s) 23, 58, 88, 213
FatI CATG 4 cut(s) 19, 54, 84, 209
FauNDI CATATG 3 cut(s) 62, 307, 501
FbaI TGATCA 1 cut(s) 310
Fnu4HI GCNGC 4 cut(s) 225, 297, 318, 506
FokI GGATG 1 cut(s) 88
Fsp4HI GCNGC 4 cut(s) 225, 297, 318, 506
FspBI CTAG 2 cut(s) 269, 429
GlaI GCGC 1 cut(s) 246
GluI GCNGC 4 cut(s) 225, 297, 318, 506
GsaI CCCAGC 2 cut(s) 362, 423
HaeIII GGCC 4 cut(s) 83, 153, 287, 344
HgaI GACGC 1 cut(s) 191
HhaI GCGC 1 cut(s) 247
Hin1I GRCGYC 1 cut(s) 202
Hin1II CATG 4 cut(s) 23, 58, 88, 213
Hin6I GCGC 1 cut(s) 245
HinP1I GCGC 1 cut(s) 245
HinfI GANTC 5 cut(s) 44, 94, 130, 239, 461
HphI GGTGA 1 cut(s) 125
Hpy166II GTNNAC 2 cut(s) 257, 416
Hpy188I TCNGA 4 cut(s) 93, 176, 460, 466
Hpy188III TCNNGA 1 cut(s) 127
Hpy8I GTNNAC 2 cut(s) 257, 416
Hpy99I CGWCG 1 cut(s) 207
HpyCH4III ACNGT 2 cut(s) 254, 487
HpyCH4IV ACGT 2 cut(s) 259, 275
HpyCH4V TGCA 2 cut(s) 257, 505
HpyF10VI GCNNNNNNNGC 2 cut(s) 293, 302
HpyF3I CTNAG 1 cut(s) 465
HpySE526I ACGT 2 cut(s) 259, 275
Hsp92I GRCGYC 1 cut(s) 202
Hsp92II CATG 4 cut(s) 23, 58, 88, 213
HspAI GCGC 1 cut(s) 245
Ksp22I TGATCA 1 cut(s) 310
Kzo9I GATC 1 cut(s) 310
LpnPI CCDG 3 cut(s) 123, 372, 433
Lsp1109I GCAGC 3 cut(s) 236, 283, 304
MaeI CTAG 2 cut(s) 269, 429
MaeII ACGT 2 cut(s) 259, 275
MalI GATC 1 cut(s) 312
MboI GATC 1 cut(s) 310
MboII GAAGA 1 cut(s) 302
MfeI CAATTG 1 cut(s) 384
MhlI GDGCHC 1 cut(s) 259
MluCI AATT 2 cut(s) 365, 384
MlyI GAGTC 3 cut(s) 38, 233, 470
MmeI TCCRAC 1 cut(s) 171
MnlI CCTC 8 cut(s) 73, 164, 182, 185, 192, 326, 436, 462
MroXI GAANNNNTTC 1 cut(s) 393
MseI TTAA 2 cut(s) 32, 279
MslI CAYNNNNRTG 1 cut(s) 262
MspA1I CMGCKG 2 cut(s) 227, 362
MunI CAATTG 1 cut(s) 384
MvnI CGCG 2 cut(s) 237, 247
MwoI GCNNNNNNNGC 2 cut(s) 293, 302
NcoI CCATGG 2 cut(s) 84, 209
NdeI CATATG 3 cut(s) 62, 307, 501
NdeII GATC 1 cut(s) 310
NlaIII CATG 4 cut(s) 23, 58, 88, 213
NlaIV GGNNCC 1 cut(s) 447
NspV TTCGAA 1 cut(s) 325
PdmI GAANNNNTTC 1 cut(s) 393
PfeI GAWTC 2 cut(s) 94, 130
PflFI GACNNNGTC 1 cut(s) 56
PkrI GCNGC 4 cut(s) 226, 298, 319, 507
PleI GAGTC 3 cut(s) 38, 233, 469
PmaCI CACGTG 1 cut(s) 260
PmlI CACGTG 1 cut(s) 260
PpsI GAGTC 3 cut(s) 38, 233, 469
Ppu21I YACGTR 1 cut(s) 260
PspCI CACGTG 1 cut(s) 260
PspFI CCCAGC 2 cut(s) 358, 419
PspN4I GGNNCC 1 cut(s) 447
PstNI CAGNNNCTG 1 cut(s) 464
PsyI GACNNNGTC 1 cut(s) 56
PvuII CAGCTG 2 cut(s) 227, 362
RsaI GTAC 2 cut(s) 417, 433
RsaNI GTAC 2 cut(s) 416, 432
RseI CAYNNNNRTG 1 cut(s) 262
SaqAI TTAA 2 cut(s) 32, 279
SatI GCNGC 4 cut(s) 225, 297, 318, 506
Sau3AI GATC 1 cut(s) 310
SchI GAGTC 3 cut(s) 38, 233, 470
SduI GDGCHC 1 cut(s) 259
SfcI CTRYAG 1 cut(s) 187
SfuI TTCGAA 1 cut(s) 325
SmiMI CAYNNNNRTG 1 cut(s) 262
SpeI ACTAGT 1 cut(s) 428
Sse9I AATT 2 cut(s) 365, 384
SsiI CCGC 1 cut(s) 235
SspMI CTAG 2 cut(s) 269, 429
StyI CCWWGG 3 cut(s) 84, 209, 300
TaaI ACNGT 2 cut(s) 254, 487
TaiI ACGT 2 cut(s) 262, 278
TaqI TCGA 2 cut(s) 140, 325
TasI AATT 2 cut(s) 365, 384
TfiI GAWTC 2 cut(s) 94, 130
Tru1I TTAA 2 cut(s) 32, 279
Tru9I TTAA 2 cut(s) 32, 279
TseI GCWGC 4 cut(s) 224, 296, 317, 505
TspGWI ACGGA 2 cut(s) 94, 455
Tth111I GACNNNGTC 1 cut(s) 56
VneI GTGCAC 1 cut(s) 255
XapI RAATTY 1 cut(s) 365
XmnI GAANNNNTTC 1 cut(s) 393
XspI CTAG 2 cut(s) 269, 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.