Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0012591

Physical Location & Seq

Genomic Coordinates Forward (+)

5089946 .. 5093625

Gene Structure 3680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g08710.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGATTCCGAGTTCTGGACCTCCCGCCTCGCCGCTGCGAAACGTCAGTACACGTTGCAGCACCATCACCAGAGCTCCCACTTAGATCGGCTGAGCATGGATGATTTCGAGGTGGAAGACGAGGTCCGACCTGACTTCCCGTGCCCGTATTGCTACGAGGACTTCGACATCGCGTCCTTGTGTGCGCACCTCGAGGATGAGCACACATGCGAATCTAGAGTCACCGTTTGTCCCATTTGCTCGATTAAAGTTACACGGGACATGTTAAGTCATATTACACTGCAACATGGGCACTTATTCAAGTTGCAGAGACGTCGCAGGTTACGTAGAGTTGCTATTCCTAATAGTCAAGCACTGTCTCTCCTTGGCCGGGATCTCCGTGAGGCTCATCTCCAAGTGCTTTTAGGGAGTGGGGGATATCGATCAGAAAATGCTAATGTGTCTAGTGCAGCTACCGATCCATTCCTGTCATCACTTATATTGAATTTCCCTGCATCAGGAGCGGATGAAATTTCAAAATCCGTGGTAACAACTGCTGAGGACACTCCCGCAAAGACTGTGGCTCCCTCACATATATGGAAATCAAGTTTTGATCCTTCCTTGAGTCATGAAGAGAGGGAGAAAAGGATTCAACAAGCTACTGGGAGATCTGGTTTCGTGCAAGATCTGTTTCTCTCTACAATGTTAAGTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Di19_C zf-Di19

Protein Analysis

232

Amino Acids

26.07

Weight (kDa)

5.93

Isoelectric Point (pI)

56.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-Di19	PF05605	45 - 97	7.7e-23	Drought induced 19 protein (Di19), zinc-binding
Di19_C	PF14571	119 - 228	8.7e-30	Stress-induced protein Di19, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012591)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g08710 FvH4_3g08710
malus_domestica	MD05G1310900.v1.1 MD10G1290000.v1.1
prunus_persica	Prupe.4G051700_v2.0.a1 Prupe.4G051700_v2.0.a1
pyrus_communis	pycom10g24230
rosa_chinensis	RchiOBHm_Chr5g0009071
rosa_laevigata	RLG00000031627
rosa_multiflora	Rmu_sc0002034.1_g000010
rosa_roxburghii	Rroxscaffold_1G00066960 Rroxscaffold_1G00067630
rosa_rugosa	Rorug04G0440900
rosa_samantha	Rh5AG070000 Rh5BG066700 Rh5BG066900 Rh5CG078100 Rh5DG066200
rosa_wichuraiana	Rw5G006550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	316
AbsI	CCTCGAGG	1 cut(s)	191
Acc16I	TGCGCA	1 cut(s)	186
Acc36I	ACCTGC	1 cut(s)	309
AccBSI	CCGCTC	1 cut(s)	503
AccII	CGCG	1 cut(s)	173
AciI	CCGC	4 cut(s)	25, 33, 503, 549
AclWI	GGATC	3 cut(s)	381, 452, 587
AcoI	YGGCCR	1 cut(s)	367
AcsI	RAATTY	2 cut(s)	484, 510
AcyI	GRCGYC	1 cut(s)	313
AfaI	GTAC	1 cut(s)	50
AfiI	CCNNNNNNNGG	3 cut(s)	15, 370, 497
AflIII	ACRYGT	2 cut(s)	51, 261
AgsI	TTSAA	4 cut(s)	301, 484, 516, 632
AhdI	GACNNNNNGTC	1 cut(s)	172
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	3 cut(s)	75, 452, 638
AluI	AGCT	3 cut(s)	75, 452, 638
Alw21I	GWGCWC	2 cut(s)	77, 204
Alw26I	GTCTC	2 cut(s)	304, 363
AlwI	GGATC	3 cut(s)	381, 452, 587
Ama87I	CYCGRG	1 cut(s)	191
AoxI	GGCC	1 cut(s)	367
ApeKI	GCWGC	3 cut(s)	35, 58, 449
ApoI	RAATTY	2 cut(s)	484, 510
ArsI	GACNNNNNNTTYG	2 cut(s)	204, 236
AspLEI	GCGC	1 cut(s)	187
AspS9I	GGNCC	2 cut(s)	18, 124
AsuC2I	CCSGG	1 cut(s)	371
AsuHPI	GGTGA	2 cut(s)	59, 214
AvaI	CYCGRG	1 cut(s)	191
AvaII	GGWCC	2 cut(s)	18, 124
BaeGI	GKGCMC	2 cut(s)	146, 294
BanII	GRGCYC	1 cut(s)	77
BbsI	GAAGAC	1 cut(s)	123
Bbv12I	GWGCWC	2 cut(s)	77, 204
BbvCI	CCTCAGC	1 cut(s)	537
BbvI	GCAGC	3 cut(s)	22, 70, 461
BccI	CCATC	1 cut(s)	72
BcgI	CGANNNNNNTGC	2 cut(s)	296, 330
BcnI	CCSGG	1 cut(s)	371
BcoDI	GTCTC	2 cut(s)	304, 363
BfaI	CTAG	2 cut(s)	216, 444
BfuAI	ACCTGC	1 cut(s)	309
BglII	AGATCT	2 cut(s)	647, 664
BisI	GCNGC	4 cut(s)	33, 36, 59, 450
BlpI	GCTNAGC	1 cut(s)	92
BlsI	GCNGC	4 cut(s)	34, 37, 60, 451
Bme1390I	CCNGG	1 cut(s)	371
Bme18I	GGWCC	2 cut(s)	18, 124
BmeRI	GACNNNNNGTC	1 cut(s)	172
BmeT110I	CYCGRG	1 cut(s)	191
BmgT120I	GGNCC	2 cut(s)	18, 124
BmiI	GGNNCC	1 cut(s)	564
BmrFI	CCNGG	1 cut(s)	371
BmrI	ACTGGG	1 cut(s)	651
BmsI	GCATC	1 cut(s)	503
BmuI	ACTGGG	1 cut(s)	651
BpiI	GAAGAC	1 cut(s)	123
Bpu10I	CCTNAGC	1 cut(s)	537
Bpu1102I	GCTNAGC	1 cut(s)	92
BpuEI	CTTGAG	1 cut(s)	622
BpuMI	CCSGG	1 cut(s)	371
Bsa29I	ATCGAT	1 cut(s)	421
BsaAI	YACGTR	1 cut(s)	326
BsaBI	GATNNNNATC	1 cut(s)	421
BsaHI	GRCGYC	1 cut(s)	313
BsaJI	CCNNGG	2 cut(s)	364, 522
BsaXI	ACNNNNNCTCC	8 cut(s)	59, 89, 345, 375, 547, 577, 637, 667
Bsc4I	CCNNNNNNNGG	3 cut(s)	15, 370, 497
Bse1I	ACTGG	1 cut(s)	646
Bse8I	GATNNNNATC	1 cut(s)	421
BseCI	ATCGAT	1 cut(s)	421
BseDI	CCNNGG	2 cut(s)	364, 522
BseGI	GGATG	3 cut(s)	106, 202, 511
BseJI	GATNNNNATC	1 cut(s)	421
BseLI	CCNNNNNNNGG	3 cut(s)	15, 370, 497
BseMII	CTCAG	2 cut(s)	83, 528
BseNI	ACTGG	1 cut(s)	646
BseSI	GKGCMC	2 cut(s)	146, 294
BseXI	GCAGC	3 cut(s)	22, 70, 461
BsgI	GTGCAG	1 cut(s)	468
Bsh1236I	CGCG	1 cut(s)	173
BshFI	GGCC	1 cut(s)	369
BshVI	ATCGAT	1 cut(s)	421
BsiHKAI	GWGCWC	2 cut(s)	77, 204
BsiHKCI	CYCGRG	1 cut(s)	191
BsiSI	CCGG	1 cut(s)	370
BslFI	GGGAC	2 cut(s)	216, 272
BslI	CCNNNNNNNGG	3 cut(s)	15, 370, 497
BsmAI	GTCTC	2 cut(s)	304, 363
BsmBI	CGTCTC	1 cut(s)	304
BsmFI	GGGAC	2 cut(s)	216, 272
BsnI	GGCC	1 cut(s)	369
BsoBI	CYCGRG	1 cut(s)	191
Bsp1286I	GDGCHC	4 cut(s)	77, 146, 204, 294
Bsp143I	GATC	7 cut(s)	85, 373, 422, 457, 592, 647, 664
Bsp1720I	GCTNAGC	1 cut(s)	92
BspACI	CCGC	4 cut(s)	25, 33, 503, 549
BspANI	GGCC	1 cut(s)	369
BspCNI	CTCAG	2 cut(s)	84, 529
BspDI	ATCGAT	1 cut(s)	421
BspFNI	CGCG	1 cut(s)	173
BspHI	TCATGA	1 cut(s)	607
BspLI	GGNNCC	1 cut(s)	564
BspMI	ACCTGC	1 cut(s)	309
BspPI	GGATC	3 cut(s)	381, 452, 587
BsrBI	CCGCTC	1 cut(s)	503
BsrI	ACTGG	1 cut(s)	646
BssECI	CCNNGG	2 cut(s)	364, 522
BssMI	GATC	7 cut(s)	85, 373, 422, 457, 592, 647, 664
BssNI	GRCGYC	1 cut(s)	313
BssT1I	CCWWGG	1 cut(s)	364
Bst4CI	ACNGT	3 cut(s)	226, 357, 559
Bst6I	CTCTTC	1 cut(s)	606
BstACI	GRCGYC	1 cut(s)	313
BstBAI	YACGTR	1 cut(s)	326
BstDEI	CTNAG	3 cut(s)	82, 92, 537
BstDSI	CCRYGG	1 cut(s)	522
BstENI	CCTNNNNNAGG	1 cut(s)	495
BstF5I	GGATG	3 cut(s)	106, 202, 511
BstFNI	CGCG	1 cut(s)	173
BstHHI	GCGC	1 cut(s)	187
BstKTI	GATC	7 cut(s)	88, 376, 425, 460, 595, 650, 667
BstMAI	GTCTC	2 cut(s)	304, 363
BstMBI	GATC	7 cut(s)	85, 373, 422, 457, 592, 647, 664
BstMWI	GCNNNNNNNGC	3 cut(s)	150, 289, 500
BstNSI	RCATGY	2 cut(s)	210, 265
BstSCI	CCNGG	1 cut(s)	369
BstSLI	GKGCMC	2 cut(s)	146, 294
BstSNI	TACGTA	1 cut(s)	326
BstUI	CGCG	1 cut(s)	173
BstV1I	GCAGC	3 cut(s)	22, 70, 461
BstV2I	GAAGAC	1 cut(s)	123
BstX2I	RGATCY	3 cut(s)	373, 647, 664
BstYI	RGATCY	3 cut(s)	373, 647, 664
Bsu15I	ATCGAT	1 cut(s)	421
BsuRI	GGCC	1 cut(s)	369
BsuTUI	ATCGAT	1 cut(s)	421
BtgI	CCRYGG	1 cut(s)	522
BtgZI	GCGATG	1 cut(s)	154
BtsCI	GGATG	3 cut(s)	106, 202, 511
BtsI	GCAGTG	1 cut(s)	278
BtsIMutI	CAGTG	2 cut(s)	278, 353
BveI	ACCTGC	1 cut(s)	309
CciI	TCATGA	1 cut(s)	607
CfoI	GCGC	1 cut(s)	187
Cfr13I	GGNCC	2 cut(s)	18, 124
ClaI	ATCGAT	1 cut(s)	421
CseI	GACGC	1 cut(s)	162
Csp6I	GTAC	1 cut(s)	49
CspCI	CAANNNNNGTGG	4 cut(s)	504, 539, 540, 575
CviAII	CATG	5 cut(s)	97, 207, 262, 287, 608
CviJI	RGCY	7 cut(s)	75, 91, 369, 386, 452, 563, 638
CviKI_1	RGCY	7 cut(s)	75, 91, 369, 386, 452, 563, 638
CviQI	GTAC	1 cut(s)	49
DdeI	CTNAG	3 cut(s)	82, 92, 537
DpnI	GATC	7 cut(s)	87, 375, 424, 459, 594, 649, 666
DpnII	GATC	7 cut(s)	85, 373, 422, 457, 592, 647, 664
DriI	GACNNNNNGTC	1 cut(s)	172
EaeI	YGGCCR	1 cut(s)	367
Eam1104I	CTCTTC	1 cut(s)	606
Eam1105I	GACNNNNNGTC	1 cut(s)	172
EarI	CTCTTC	1 cut(s)	606
Ecl136II	GAGCTC	1 cut(s)	75
Eco105I	TACGTA	1 cut(s)	326
Eco130I	CCWWGG	1 cut(s)	364
Eco24I	GRGCYC	1 cut(s)	77
Eco32I	GATATC	1 cut(s)	419
Eco47I	GGWCC	2 cut(s)	18, 124
Eco53kI	GAGCTC	1 cut(s)	75
Eco88I	CYCGRG	1 cut(s)	191
EcoICRI	GAGCTC	1 cut(s)	75
EcoNI	CCTNNNNNAGG	1 cut(s)	495
EcoRV	GATATC	1 cut(s)	419
EcoT14I	CCWWGG	1 cut(s)	364
EcoT38I	GRGCYC	1 cut(s)	77
ErhI	CCWWGG	1 cut(s)	364
Esp3I	CGTCTC	1 cut(s)	304
FaeI	CATG	5 cut(s)	100, 210, 265, 290, 611
FaqI	GGGAC	2 cut(s)	216, 272
FatI	CATG	5 cut(s)	96, 206, 261, 286, 607
FauI	CCCGC	2 cut(s)	32, 556
Fnu4HI	GCNGC	4 cut(s)	33, 36, 59, 450
FokI	GGATG	3 cut(s)	113, 209, 518
FriOI	GRGCYC	1 cut(s)	77
Fsp4HI	GCNGC	4 cut(s)	33, 36, 59, 450
FspAI	RTGCGCAY	1 cut(s)	186
FspBI	CTAG	2 cut(s)	216, 444
FspI	TGCGCA	1 cut(s)	186
GlaI	GCGC	1 cut(s)	186
GluI	GCNGC	4 cut(s)	33, 36, 59, 450
HaeIII	GGCC	1 cut(s)	369
HapII	CCGG	1 cut(s)	370
HgaI	GACGC	1 cut(s)	162
HhaI	GCGC	1 cut(s)	187
Hin1I	GRCGYC	1 cut(s)	313
Hin1II	CATG	5 cut(s)	100, 210, 265, 290, 611
Hin6I	GCGC	1 cut(s)	185
HinP1I	GCGC	1 cut(s)	185
HinfI	GANTC	5 cut(s)	5, 212, 219, 604, 628
HpaII	CCGG	1 cut(s)	370
HphI	GGTGA	2 cut(s)	59, 214
Hpy166II	GTNNAC	1 cut(s)	51
Hpy188I	TCNGA	3 cut(s)	10, 128, 427
Hpy188III	TCNNGA	4 cut(s)	16, 216, 498, 608
Hpy8I	GTNNAC	1 cut(s)	51
Hpy99I	CGWCG	1 cut(s)	318
HpyAV	CCTTC	1 cut(s)	606
HpyCH4III	ACNGT	3 cut(s)	226, 357, 559
HpyCH4IV	ACGT	4 cut(s)	43, 53, 313, 325
HpyCH4V	TGCA	6 cut(s)	58, 283, 307, 449, 494, 661
HpyF10VI	GCNNNNNNNGC	3 cut(s)	150, 289, 500
HpyF3I	CTNAG	3 cut(s)	82, 92, 537
HpySE526I	ACGT	4 cut(s)	43, 53, 313, 325
Hsp92I	GRCGYC	1 cut(s)	313
Hsp92II	CATG	5 cut(s)	100, 210, 265, 290, 611
HspAI	GCGC	1 cut(s)	185
Kzo9I	GATC	7 cut(s)	85, 373, 422, 457, 592, 647, 664
LmnI	GCTCC	3 cut(s)	80, 500, 568
LpnPI	CCDG	9 cut(s)	83, 144, 304, 383, 479, 483, 504, 627, 636
Lsp1109I	GCAGC	3 cut(s)	22, 70, 461
LweI	GCATC	1 cut(s)	503
MaeI	CTAG	2 cut(s)	216, 444
MaeII	ACGT	4 cut(s)	43, 53, 313, 325
MaeIII	GTNAC	5 cut(s)	220, 250, 321, 526, 689
MalI	GATC	7 cut(s)	87, 375, 424, 459, 594, 649, 666
MbiI	CCGCTC	1 cut(s)	503
MboI	GATC	7 cut(s)	85, 373, 422, 457, 592, 647, 664
MboII	GAAGA	2 cut(s)	128, 623
MflI	RGATCY	3 cut(s)	373, 647, 664
MhlI	GDGCHC	4 cut(s)	77, 146, 204, 294
MluCI	AATT	2 cut(s)	484, 510
MlyI	GAGTC	2 cut(s)	228, 613
MmeI	TCCRAC	1 cut(s)	151
MseI	TTAA	3 cut(s)	246, 266, 686
MslI	CAYNNNNRTG	1 cut(s)	574
MspA1I	CMGCKG	1 cut(s)	35
MspI	CCGG	1 cut(s)	370
MspR9I	CCNGG	1 cut(s)	371
MvnI	CGCG	1 cut(s)	173
MwoI	GCNNNNNNNGC	3 cut(s)	150, 289, 500
NciI	CCSGG	1 cut(s)	371
NdeII	GATC	7 cut(s)	85, 373, 422, 457, 592, 647, 664
NlaIII	CATG	5 cut(s)	100, 210, 265, 290, 611
NlaIV	GGNNCC	1 cut(s)	564
NmuCI	GTSAC	2 cut(s)	220, 689
NsbI	TGCGCA	1 cut(s)	186
NspI	RCATGY	2 cut(s)	210, 265
PaeR7I	CTCGAG	1 cut(s)	191
PagI	TCATGA	1 cut(s)	607
PciI	ACATGT	1 cut(s)	261
PcsI	WCGNNNNNNNCGW	2 cut(s)	162, 322
PfeI	GAWTC	3 cut(s)	5, 212, 628
PflFI	GACNNNGTC	1 cut(s)	122
PkrI	GCNGC	4 cut(s)	34, 37, 60, 451
PleI	GAGTC	2 cut(s)	227, 612
PpsI	GAGTC	2 cut(s)	227, 612
Ppu21I	YACGTR	1 cut(s)	326
PscI	ACATGT	1 cut(s)	261
Psp124BI	GAGCTC	1 cut(s)	77
PspN4I	GGNNCC	1 cut(s)	564
PspPI	GGNCC	2 cut(s)	18, 124
PspXI	VCTCGAGB	1 cut(s)	191
PsuI	RGATCY	3 cut(s)	373, 647, 664
PsyI	GACNNNGTC	1 cut(s)	122
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
RseI	CAYNNNNRTG	1 cut(s)	574
SacI	GAGCTC	1 cut(s)	77
SaqAI	TTAA	3 cut(s)	246, 266, 686
SatI	GCNGC	4 cut(s)	33, 36, 59, 450
Sau3AI	GATC	7 cut(s)	85, 373, 422, 457, 592, 647, 664
Sau96I	GGNCC	2 cut(s)	18, 124
SchI	GAGTC	2 cut(s)	228, 613
ScrFI	CCNGG	1 cut(s)	371
SduI	GDGCHC	4 cut(s)	77, 146, 204, 294
SfaNI	GCATC	1 cut(s)	503
Sfr274I	CTCGAG	1 cut(s)	191
SinI	GGWCC	2 cut(s)	18, 124
SlaI	CTCGAG	1 cut(s)	191
SmiMI	CAYNNNNRTG	1 cut(s)	574
SmlI	CTYRAG	2 cut(s)	191, 601
SmoI	CTYRAG	2 cut(s)	191, 601
SnaBI	TACGTA	1 cut(s)	326
Sse9I	AATT	2 cut(s)	484, 510
SsiI	CCGC	4 cut(s)	25, 33, 503, 549
SspMI	CTAG	2 cut(s)	216, 444
SstI	GAGCTC	1 cut(s)	77
StyD4I	CCNGG	1 cut(s)	369
StyI	CCWWGG	1 cut(s)	364
TaaI	ACNGT	3 cut(s)	226, 357, 559
TaiI	ACGT	4 cut(s)	46, 56, 316, 328
TaqI	TCGA	5 cut(s)	108, 165, 192, 242, 421
TasI	AATT	2 cut(s)	484, 510
TatI	WGTACW	1 cut(s)	48
TauI	GCSGC	1 cut(s)	35
TfiI	GAWTC	3 cut(s)	5, 212, 628
Tru1I	TTAA	3 cut(s)	246, 266, 686
Tru9I	TTAA	3 cut(s)	246, 266, 686
TscAI	CASTG	2 cut(s)	285, 360
TseFI	GTSAC	2 cut(s)	220, 689
TseI	GCWGC	3 cut(s)	35, 58, 449
Tsp45I	GTSAC	2 cut(s)	220, 689
TspDTI	ATGAA	2 cut(s)	522, 624
TspGWI	ACGGA	2 cut(s)	368, 511
TspRI	CASTG	2 cut(s)	285, 360
Tth111I	GACNNNGTC	1 cut(s)	122
VpaK11BI	GGWCC	2 cut(s)	18, 124
XagI	CCTNNNNNAGG	1 cut(s)	495
XapI	RAATTY	2 cut(s)	484, 510
XbaI	TCTAGA	1 cut(s)	215
XceI	RCATGY	2 cut(s)	210, 265
XhoI	CTCGAG	1 cut(s)	191
XspI	CTAG	2 cut(s)	216, 444
ZraI	GACGTC	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.