Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0012591

Physical Location & Seq

Genomic Coordinates Forward (+)

44122533 .. 44125768

Gene Structure 3236 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1310900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGACTCCGAGTTCTGGACCTCCCGCCTCGCCGCCGCCAAACGCCAGTACACGACGCAGCACCACCACCAGAGCTCCCACTTCGATCGGTTAAGCATCGATGATTTCGAGGTAGAAGACGAGGTCCGACCCGACTTCCCGTGCCCGTATTGCTACGAGGACTTCGACATCGCGTCCTTGTGTTCCCACCTCGAAGACGAGCACTCCTGCGAATCTAAAGTCACCATTTGTCCCATTTGCTCCGTTAAAGTTTCACGGGATATGTTAAGTCATATCACACTGCAGCATGGACACTTGTTCAAGATATCCTTTAAACTGGAAAATTTAAGACGTCGCAGATTGCGTAGAGTTGCTATTCCTAACAGTCAGGCACTGTCTCTCCTTGGCCGGGATCTTCGTGAGGCTCATCTCCAGGTGCTTCTAGGGAGCGGTGGATATCGATCAGAAAATGCTAATGTGTCTAATGCAGCGGCAACCGATCCATTCTTGTCATCACTTATTTTGAATTTCCCTGCTTCCGGAGCAGATGAAATTTCAAAATCTGTGGTAACCACTACTGAGGACACTTCCGCAAAGAATGCGGTGCCATCACATATTTGGAAATCAAGTTTTGATCCTTCCTTGAGTTATGAAGAGCGGGAGAAAAGGATTCGACAAGCTACTGGAAGAGCTGGTTTCGTGCAAGATCTGTTCCTCTCAACACTGTTAGGTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Di19_C zf-Di19

Protein Analysis

239

Amino Acids

26.86

Weight (kDa)

5.99

Isoelectric Point (pI)

50.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-Di19	PF05605	45 - 97	7.2e-23	Drought induced 19 protein (Di19), zinc-binding
Di19_C	PF14571	125 - 235	3.1e-29	Stress-induced protein Di19, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012591)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g08710 FvH4_3g08710
malus_domestica	MD05G1310900.v1.1 MD10G1290000.v1.1
prunus_persica	Prupe.4G051700_v2.0.a1 Prupe.4G051700_v2.0.a1
pyrus_communis	pycom10g24230
rosa_chinensis	RchiOBHm_Chr5g0009071
rosa_laevigata	RLG00000031627
rosa_multiflora	Rmu_sc0002034.1_g000010
rosa_roxburghii	Rroxscaffold_1G00066960 Rroxscaffold_1G00067630
rosa_rugosa	Rorug04G0440900
rosa_samantha	Rh5AG070000 Rh5BG066700 Rh5BG066900 Rh5CG078100 Rh5DG066200
rosa_wichuraiana	Rw5G006550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	334
AccB1I	GGYRCC	1 cut(s)	583
AccBSI	CCGCTC	2 cut(s)	429, 637
AccII	CGCG	1 cut(s)	173
AccIII	TCCGGA	1 cut(s)	518
AciI	CCGC	8 cut(s)	25, 33, 36, 429, 470, 570, 581, 637
AclWI	GGATC	3 cut(s)	399, 473, 608
AcoI	YGGCCR	1 cut(s)	385
AcsI	RAATTY	3 cut(s)	322, 505, 531
AcyI	GRCGYC	1 cut(s)	331
AfaI	GTAC	1 cut(s)	50
AfiI	CCNNNNNNNGG	3 cut(s)	15, 388, 518
AgsI	TTSAA	3 cut(s)	301, 505, 537
AhdI	GACNNNNNGTC	1 cut(s)	172
AjnI	CCWGG	1 cut(s)	411
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	3 cut(s)	75, 659, 671
AluI	AGCT	3 cut(s)	75, 659, 671
Alw21I	GWGCWC	2 cut(s)	77, 204
Alw26I	GTCTC	1 cut(s)	381
AlwI	GGATC	3 cut(s)	399, 473, 608
AlwNI	CAGNNNCTG	1 cut(s)	373
Aor13HI	TCCGGA	1 cut(s)	518
AoxI	GGCC	1 cut(s)	385
ApeKI	GCWGC	3 cut(s)	58, 283, 467
ApoI	RAATTY	3 cut(s)	322, 505, 531
ArsI	GACNNNNNNTTYG	2 cut(s)	204, 236
AspS9I	GGNCC	2 cut(s)	18, 124
AsuC2I	CCSGG	1 cut(s)	389
AsuHPI	GGTGA	1 cut(s)	214
AvaII	GGWCC	2 cut(s)	18, 124
BaeGI	GKGCMC	1 cut(s)	146
BanI	GGYRCC	1 cut(s)	583
BanII	GRGCYC	1 cut(s)	77
BbsI	GAAGAC	2 cut(s)	123, 201
Bbv12I	GWGCWC	2 cut(s)	77, 204
BbvI	GCAGC	3 cut(s)	70, 295, 479
BccI	CCATC	1 cut(s)	595
BciT130I	CCWGG	1 cut(s)	413
BcnI	CCSGG	1 cut(s)	389
BcoDI	GTCTC	1 cut(s)	381
BfaI	CTAG	1 cut(s)	422
BfmI	CTRYAG	1 cut(s)	281
BglII	AGATCT	1 cut(s)	685
BisI	GCNGC	6 cut(s)	33, 36, 59, 284, 468, 471
BlsI	GCNGC	6 cut(s)	34, 37, 60, 285, 469, 472
Bme1390I	CCNGG	2 cut(s)	389, 413
Bme18I	GGWCC	2 cut(s)	18, 124
BmeRI	GACNNNNNGTC	1 cut(s)	172
BmgT120I	GGNCC	2 cut(s)	18, 124
BmiI	GGNNCC	1 cut(s)	585
BmrFI	CCNGG	2 cut(s)	389, 413
BmsI	GCATC	1 cut(s)	105
BpiI	GAAGAC	2 cut(s)	123, 201
BpmI	CTGGAG	1 cut(s)	395
BpuEI	CTTGAG	1 cut(s)	643
BpuMI	CCSGG	1 cut(s)	389
Bsa29I	ATCGAT	2 cut(s)	99, 439
BsaBI	GATNNNNATC	1 cut(s)	439
BsaHI	GRCGYC	1 cut(s)	331
BsaJI	CCNNGG	1 cut(s)	382
BsaWI	WCCGGW	1 cut(s)	518
BsaXI	ACNNNNNCTCC	6 cut(s)	59, 89, 188, 218, 363, 393
Bsc4I	CCNNNNNNNGG	3 cut(s)	15, 388, 518
Bse1I	ACTGG	3 cut(s)	46, 321, 667
Bse8I	GATNNNNATC	1 cut(s)	439
BseAI	TCCGGA	1 cut(s)	518
BseBI	CCWGG	1 cut(s)	413
BseCI	ATCGAT	2 cut(s)	99, 439
BseDI	CCNNGG	1 cut(s)	382
BseJI	GATNNNNATC	1 cut(s)	439
BseLI	CCNNNNNNNGG	3 cut(s)	15, 388, 518
BseMII	CTCAG	1 cut(s)	549
BseNI	ACTGG	3 cut(s)	46, 321, 667
BseSI	GKGCMC	1 cut(s)	146
BseXI	GCAGC	3 cut(s)	70, 295, 479
Bsh1236I	CGCG	1 cut(s)	173
Bsh1285I	CGRYCG	1 cut(s)	88
BshFI	GGCC	1 cut(s)	387
BshNI	GGYRCC	1 cut(s)	583
BshVI	ATCGAT	2 cut(s)	99, 439
BsiEI	CGRYCG	1 cut(s)	88
BsiHKAI	GWGCWC	2 cut(s)	77, 204
BsiSI	CCGG	2 cut(s)	388, 519
BslFI	GGGAC	1 cut(s)	216
BslI	CCNNNNNNNGG	3 cut(s)	15, 388, 518
BsmAI	GTCTC	1 cut(s)	381
BsmFI	GGGAC	1 cut(s)	216
BsmI	GAATGC	1 cut(s)	583
BsnI	GGCC	1 cut(s)	387
Bsp1286I	GDGCHC	3 cut(s)	77, 146, 204
Bsp13I	TCCGGA	1 cut(s)	518
Bsp143I	GATC	6 cut(s)	85, 391, 440, 478, 613, 685
BspACI	CCGC	8 cut(s)	25, 33, 36, 429, 470, 570, 581, 637
BspANI	GGCC	1 cut(s)	387
BspCNI	CTCAG	1 cut(s)	550
BspDI	ATCGAT	2 cut(s)	99, 439
BspEI	TCCGGA	1 cut(s)	518
BspFNI	CGCG	1 cut(s)	173
BspLI	GGNNCC	1 cut(s)	585
BspMAI	CTGCAG	1 cut(s)	285
BspPI	GGATC	3 cut(s)	399, 473, 608
BspQI	GCTCTTC	2 cut(s)	627, 661
BspT107I	GGYRCC	1 cut(s)	583
BsrBI	CCGCTC	2 cut(s)	429, 637
BsrI	ACTGG	3 cut(s)	46, 321, 667
BssECI	CCNNGG	1 cut(s)	382
BssMI	GATC	6 cut(s)	85, 391, 440, 478, 613, 685
BssNI	GRCGYC	1 cut(s)	331
BssT1I	CCWWGG	1 cut(s)	382
Bst2UI	CCWGG	1 cut(s)	413
Bst4CI	ACNGT	3 cut(s)	365, 375, 705
Bst6I	CTCTTC	2 cut(s)	627, 661
BstACI	GRCGYC	1 cut(s)	331
BstAPI	GCANNNNNTGC	1 cut(s)	578
BstDEI	CTNAG	1 cut(s)	558
BstEII	GGTNACC	1 cut(s)	547
BstFNI	CGCG	1 cut(s)	173
BstKTI	GATC	6 cut(s)	88, 394, 443, 481, 616, 688
BstMAI	GTCTC	1 cut(s)	381
BstMBI	GATC	6 cut(s)	85, 391, 440, 478, 613, 685
BstMCI	CGRYCG	1 cut(s)	88
BstMWI	GCNNNNNNNGC	3 cut(s)	150, 521, 578
BstNI	CCWGG	1 cut(s)	413
BstPI	GGTNACC	1 cut(s)	547
BstSCI	CCNGG	2 cut(s)	387, 411
BstSFI	CTRYAG	1 cut(s)	281
BstSLI	GKGCMC	1 cut(s)	146
BstUI	CGCG	1 cut(s)	173
BstV1I	GCAGC	3 cut(s)	70, 295, 479
BstV2I	GAAGAC	2 cut(s)	123, 201
BstX2I	RGATCY	2 cut(s)	391, 685
BstYI	RGATCY	2 cut(s)	391, 685
Bsu15I	ATCGAT	2 cut(s)	99, 439
BsuRI	GGCC	1 cut(s)	387
BsuTUI	ATCGAT	2 cut(s)	99, 439
BtgZI	GCGATG	1 cut(s)	154
BtsI	GCAGTG	1 cut(s)	278
BtsIMutI	CAGTG	3 cut(s)	278, 371, 701
CaiI	CAGNNNCTG	1 cut(s)	373
Cfr13I	GGNCC	2 cut(s)	18, 124
ClaI	ATCGAT	2 cut(s)	99, 439
CseI	GACGC	2 cut(s)	64, 162
Csp6I	GTAC	1 cut(s)	49
CspCI	CAANNNNNGTGG	2 cut(s)	525, 560
CviAII	CATG	1 cut(s)	287
CviJI	RGCY	5 cut(s)	75, 387, 404, 659, 671
CviKI_1	RGCY	5 cut(s)	75, 387, 404, 659, 671
CviQI	GTAC	1 cut(s)	49
DdeI	CTNAG	1 cut(s)	558
DpnI	GATC	6 cut(s)	87, 393, 442, 480, 615, 687
DpnII	GATC	6 cut(s)	85, 391, 440, 478, 613, 685
DraI	TTTAAA	1 cut(s)	313
DriI	GACNNNNNGTC	1 cut(s)	172
EaeI	YGGCCR	1 cut(s)	385
Eam1104I	CTCTTC	2 cut(s)	627, 661
Eam1105I	GACNNNNNGTC	1 cut(s)	172
EarI	CTCTTC	2 cut(s)	627, 661
Ecl136II	GAGCTC	1 cut(s)	75
Eco130I	CCWWGG	1 cut(s)	382
Eco24I	GRGCYC	1 cut(s)	77
Eco32I	GATATC	2 cut(s)	306, 437
Eco47I	GGWCC	2 cut(s)	18, 124
Eco53kI	GAGCTC	1 cut(s)	75
Eco91I	GGTNACC	1 cut(s)	547
EcoICRI	GAGCTC	1 cut(s)	75
EcoO65I	GGTNACC	1 cut(s)	547
EcoRII	CCWGG	1 cut(s)	411
EcoRV	GATATC	2 cut(s)	306, 437
EcoT14I	CCWWGG	1 cut(s)	382
EcoT38I	GRGCYC	1 cut(s)	77
ErhI	CCWWGG	1 cut(s)	382
FaeI	CATG	1 cut(s)	290
FaiI	YATR	5 cut(s)	263, 273, 288, 594, 630
FalI	AAGNNNNNCTT	2 cut(s)	293, 325
FaqI	GGGAC	1 cut(s)	216
FatI	CATG	1 cut(s)	286
FauI	CCCGC	2 cut(s)	32, 630
Fnu4HI	GCNGC	6 cut(s)	33, 36, 59, 284, 468, 471
FriOI	GRGCYC	1 cut(s)	77
Fsp4HI	GCNGC	6 cut(s)	33, 36, 59, 284, 468, 471
FspBI	CTAG	1 cut(s)	422
GluI	GCNGC	6 cut(s)	33, 36, 59, 284, 468, 471
GsuI	CTGGAG	1 cut(s)	395
HaeIII	GGCC	1 cut(s)	387
HapII	CCGG	2 cut(s)	388, 519
HgaI	GACGC	2 cut(s)	64, 162
Hin1I	GRCGYC	1 cut(s)	331
Hin1II	CATG	1 cut(s)	290
HinfI	GANTC	3 cut(s)	5, 212, 649
HpaII	CCGG	2 cut(s)	388, 519
HphI	GGTGA	1 cut(s)	214
Hpy166II	GTNNAC	1 cut(s)	51
Hpy188I	TCNGA	3 cut(s)	10, 128, 445
Hpy188III	TCNNGA	4 cut(s)	16, 301, 398, 519
Hpy8I	GTNNAC	1 cut(s)	51
Hpy99I	CGWCG	2 cut(s)	58, 336
HpyAV	CCTTC	1 cut(s)	627
HpyCH4III	ACNGT	3 cut(s)	365, 375, 705
HpyCH4IV	ACGT	1 cut(s)	331
HpyCH4V	TGCA	3 cut(s)	283, 467, 682
HpyF10VI	GCNNNNNNNGC	3 cut(s)	150, 521, 578
HpyF3I	CTNAG	1 cut(s)	558
HpySE526I	ACGT	1 cut(s)	331
Hsp92I	GRCGYC	1 cut(s)	331
Hsp92II	CATG	1 cut(s)	290
Kpn2I	TCCGGA	1 cut(s)	518
Kzo9I	GATC	6 cut(s)	85, 391, 440, 478, 613, 685
LguI	GCTCTTC	2 cut(s)	627, 661
LmnI	GCTCC	4 cut(s)	80, 245, 426, 521
Lsp1109I	GCAGC	3 cut(s)	70, 295, 479
LweI	GCATC	1 cut(s)	105
MaeI	CTAG	1 cut(s)	422
MaeII	ACGT	1 cut(s)	331
MaeIII	GTNAC	3 cut(s)	220, 547, 710
MalI	GATC	6 cut(s)	87, 393, 442, 480, 615, 687
MbiI	CCGCTC	2 cut(s)	429, 637
MboI	GATC	6 cut(s)	85, 391, 440, 478, 613, 685
MboII	GAAGA	5 cut(s)	128, 206, 386, 644, 678
MflI	RGATCY	2 cut(s)	391, 685
MhlI	GDGCHC	3 cut(s)	77, 146, 204
MluCI	AATT	3 cut(s)	322, 505, 531
MmeI	TCCRAC	1 cut(s)	151
MnlI	CCTC	9 cut(s)	31, 38, 103, 115, 151, 200, 394, 553, 704
MroI	TCCGGA	1 cut(s)	518
MseI	TTAA	5 cut(s)	92, 246, 266, 312, 326
MspA1I	CMGCKG	1 cut(s)	470
MspI	CCGG	2 cut(s)	388, 519
MspR9I	CCNGG	2 cut(s)	389, 413
Mva1269I	GAATGC	1 cut(s)	583
MvaI	CCWGG	1 cut(s)	413
MvnI	CGCG	1 cut(s)	173
MwoI	GCNNNNNNNGC	3 cut(s)	150, 521, 578
NciI	CCSGG	1 cut(s)	389
NdeII	GATC	6 cut(s)	85, 391, 440, 478, 613, 685
NlaIII	CATG	1 cut(s)	290
NlaIV	GGNNCC	1 cut(s)	585
NmuCI	GTSAC	2 cut(s)	220, 710
PciSI	GCTCTTC	2 cut(s)	627, 661
PcsI	WCGNNNNNNNCGW	3 cut(s)	105, 162, 340
PctI	GAATGC	1 cut(s)	583
PfeI	GAWTC	2 cut(s)	212, 649
PflFI	GACNNNGTC	1 cut(s)	122
PkrI	GCNGC	6 cut(s)	34, 37, 60, 285, 469, 472
Ple19I	CGATCG	1 cut(s)	88
Psp124BI	GAGCTC	1 cut(s)	77
Psp6I	CCWGG	1 cut(s)	411
PspEI	GGTNACC	1 cut(s)	547
PspGI	CCWGG	1 cut(s)	411
PspN4I	GGNNCC	1 cut(s)	585
PspPI	GGNCC	2 cut(s)	18, 124
PstI	CTGCAG	1 cut(s)	285
PstNI	CAGNNNCTG	1 cut(s)	373
PsuI	RGATCY	2 cut(s)	391, 685
PsyI	GACNNNGTC	1 cut(s)	122
PvuI	CGATCG	1 cut(s)	88
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
SacI	GAGCTC	1 cut(s)	77
SapI	GCTCTTC	2 cut(s)	627, 661
SaqAI	TTAA	5 cut(s)	92, 246, 266, 312, 326
SatI	GCNGC	6 cut(s)	33, 36, 59, 284, 468, 471
Sau3AI	GATC	6 cut(s)	85, 391, 440, 478, 613, 685
Sau96I	GGNCC	2 cut(s)	18, 124
ScrFI	CCNGG	2 cut(s)	389, 413
SduI	GDGCHC	3 cut(s)	77, 146, 204
SfaNI	GCATC	1 cut(s)	105
SfcI	CTRYAG	1 cut(s)	281
SinI	GGWCC	2 cut(s)	18, 124
SmlI	CTYRAG	1 cut(s)	622
SmoI	CTYRAG	1 cut(s)	622
Sse9I	AATT	3 cut(s)	322, 505, 531
SsiI	CCGC	8 cut(s)	25, 33, 36, 429, 470, 570, 581, 637
SspMI	CTAG	1 cut(s)	422
SstI	GAGCTC	1 cut(s)	77
StyD4I	CCNGG	2 cut(s)	387, 411
StyI	CCWWGG	1 cut(s)	382
TaaI	ACNGT	3 cut(s)	365, 375, 705
TaiI	ACGT	1 cut(s)	334
TaqI	TCGA	7 cut(s)	84, 99, 108, 165, 192, 439, 652
TasI	AATT	3 cut(s)	322, 505, 531
TatI	WGTACW	1 cut(s)	48
TauI	GCSGC	3 cut(s)	35, 38, 473
TfiI	GAWTC	2 cut(s)	212, 649
Tru1I	TTAA	5 cut(s)	92, 246, 266, 312, 326
Tru9I	TTAA	5 cut(s)	92, 246, 266, 312, 326
TscAI	CASTG	3 cut(s)	285, 378, 708
TseFI	GTSAC	2 cut(s)	220, 710
TseI	GCWGC	3 cut(s)	58, 283, 467
Tsp45I	GTSAC	2 cut(s)	220, 710
TspDTI	ATGAA	2 cut(s)	543, 645
TspGWI	ACGGA	1 cut(s)	232
TspRI	CASTG	3 cut(s)	285, 378, 708
Tth111I	GACNNNGTC	1 cut(s)	122
VpaK11BI	GGWCC	2 cut(s)	18, 124
XapI	RAATTY	3 cut(s)	322, 505, 531
XcmI	CCANNNNNNNNNTGG	1 cut(s)	594
XspI	CTAG	1 cut(s)	422
ZraI	GACGTC	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.