Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0012591

Physical Location & Seq

Genomic Coordinates Reverse (-)

6746361 .. 6749121

Gene Structure 2761 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G006550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGATTCCGAGTTCTGGACCTCCCGCCTCGCCGCCGCGAAACGTCAGTACACGCTGCAGCAGCATCACCAGAGCTCCCACTTGGATCGGCTGAGCATGGATGATTTCGAGGTGGAAGACGAGGTCCGACCGGAATTCCCGTGTCCGTATTGCTACGAGGACTTCGACATCGCGTCGTTGTGTTCGCACCTGGAGGACGAGCACCCGTGCGAATCTAGAGTCACCGTTTGTCCGATTTGCTCAATTAAAGTTACACGGGACATGTTAAGTCATATTACACTGCAACATGGGCACTTGTTCAAGATATCCTTTAAACCTGAAAGACGTCGCAGGTTACGTAGGGTTGCTGTTCCTAATAGTCAAGCACTGTCTCTCCTTGGCCGGGATCTTCGTGAGGCTCATCTCCAGGTGCTTTTAGGGAGTGGGGGATATCGATCAGAGAATGCTAATGTCACTAATGCAGCTACTGATCCATTCCTGTCGTCACTTATTTTGAATTTCCCTGCATCAGGAGCAGATGAAATTTCAAAATCTGTGGTAACAACTGCTGAGGACACTCCTGCAAAGAAGGTGGCGCCATCACATATTTGGAAATCAAGTTTTGATCCTTCCTTGAGTCATGAAGAGCGGGAGAAAAGGATACAACAAGCTACGGGGAGAGCTGGTTTTGTGCAAGATCTGTTTCTCTCTACAATGTTAAGTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Di19_C zf-Di19

Protein Analysis

235

Amino Acids

26.58

Weight (kDa)

5.99

Isoelectric Point (pI)

53.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-Di19	PF05605	45 - 97	4e-23	Drought induced 19 protein (Di19), zinc-binding
Di19_C	PF14571	123 - 232	2.2e-30	Stress-induced protein Di19, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012591)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g08710 FvH4_3g08710
malus_domestica	MD05G1310900.v1.1 MD10G1290000.v1.1
prunus_persica	Prupe.4G051700_v2.0.a1 Prupe.4G051700_v2.0.a1
pyrus_communis	pycom10g24230
rosa_chinensis	RchiOBHm_Chr5g0009071
rosa_laevigata	RLG00000031627
rosa_multiflora	Rmu_sc0002034.1_g000010
rosa_roxburghii	Rroxscaffold_1G00066960 Rroxscaffold_1G00067630
rosa_rugosa	Rorug04G0440900
rosa_samantha	Rh5AG070000 Rh5BG066700 Rh5BG066900 Rh5CG078100 Rh5DG066200
rosa_wichuraiana	Rw5G006550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	328
Acc36I	ACCTGC	1 cut(s)	321
AccB1I	GGYRCC	1 cut(s)	574
AccBSI	CCGCTC	1 cut(s)	628
AccII	CGCG	2 cut(s)	38, 173
AciI	CCGC	4 cut(s)	25, 33, 36, 628
AclWI	GGATC	4 cut(s)	93, 393, 464, 599
AcoI	YGGCCR	1 cut(s)	379
AcsI	RAATTY	3 cut(s)	134, 496, 522
AcyI	GRCGYC	2 cut(s)	325, 575
AfaI	GTAC	1 cut(s)	50
AfiI	CCNNNNNNNGG	3 cut(s)	15, 382, 509
AflIII	ACRYGT	1 cut(s)	261
AgsI	TTSAA	3 cut(s)	301, 496, 528
AhdI	GACNNNNNGTC	1 cut(s)	172
AjnI	CCWGG	2 cut(s)	189, 405
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	4 cut(s)	75, 464, 650, 662
AluI	AGCT	4 cut(s)	75, 464, 650, 662
Alw21I	GWGCWC	2 cut(s)	77, 204
Alw26I	GTCTC	1 cut(s)	375
AlwI	GGATC	4 cut(s)	93, 393, 464, 599
AlwNI	CAGNNNCTG	1 cut(s)	467
AoxI	GGCC	1 cut(s)	379
ApeKI	GCWGC	4 cut(s)	55, 58, 61, 461
ApoI	RAATTY	3 cut(s)	134, 496, 522
ArsI	GACNNNNNNTTYG	2 cut(s)	204, 236
AspLEI	GCGC	1 cut(s)	577
AspS9I	GGNCC	2 cut(s)	18, 124
AsuC2I	CCSGG	1 cut(s)	383
AsuHPI	GGTGA	2 cut(s)	59, 214
AvaII	GGWCC	2 cut(s)	18, 124
BaeGI	GKGCMC	1 cut(s)	294
BanI	GGYRCC	1 cut(s)	574
BanII	GRGCYC	1 cut(s)	77
BbsI	GAAGAC	1 cut(s)	123
Bbv12I	GWGCWC	2 cut(s)	77, 204
BbvCI	CCTCAGC	1 cut(s)	549
BbvI	GCAGC	4 cut(s)	42, 70, 73, 473
BccI	CCATC	1 cut(s)	586
BciT130I	CCWGG	2 cut(s)	191, 407
BciVI	GTATCC	1 cut(s)	633
BcnI	CCSGG	1 cut(s)	383
BcoDI	GTCTC	1 cut(s)	375
BfaI	CTAG	1 cut(s)	216
BfmI	CTRYAG	1 cut(s)	56
BfoI	RGCGCY	1 cut(s)	578
BfuAI	ACCTGC	1 cut(s)	321
BfuI	GTATCC	1 cut(s)	633
BglII	AGATCT	1 cut(s)	676
BisI	GCNGC	6 cut(s)	33, 36, 56, 59, 62, 462
BlpI	GCTNAGC	1 cut(s)	92
BlsI	GCNGC	6 cut(s)	34, 37, 57, 60, 63, 463
Bme1390I	CCNGG	3 cut(s)	191, 383, 407
Bme18I	GGWCC	2 cut(s)	18, 124
BmeRI	GACNNNNNGTC	1 cut(s)	172
BmgT120I	GGNCC	2 cut(s)	18, 124
BmiI	GGNNCC	1 cut(s)	576
BmrFI	CCNGG	3 cut(s)	191, 383, 407
BmsI	GCATC	2 cut(s)	73, 515
BpiI	GAAGAC	1 cut(s)	123
BpmI	CTGGAG	2 cut(s)	212, 389
Bpu10I	CCTNAGC	1 cut(s)	549
Bpu1102I	GCTNAGC	1 cut(s)	92
BpuEI	CTTGAG	1 cut(s)	634
BpuMI	CCSGG	1 cut(s)	383
Bsa29I	ATCGAT	1 cut(s)	433
BsaAI	YACGTR	1 cut(s)	338
BsaBI	GATNNNNATC	1 cut(s)	433
BsaHI	GRCGYC	2 cut(s)	325, 575
BsaJI	CCNNGG	1 cut(s)	376
BsaWI	WCCGGW	1 cut(s)	130
BsaXI	ACNNNNNCTCC	6 cut(s)	59, 89, 357, 387, 649, 679
Bsc4I	CCNNNNNNNGG	3 cut(s)	15, 382, 509
Bse8I	GATNNNNATC	1 cut(s)	433
BseBI	CCWGG	2 cut(s)	191, 407
BseCI	ATCGAT	1 cut(s)	433
BseDI	CCNNGG	1 cut(s)	376
BseGI	GGATG	1 cut(s)	106
BseJI	GATNNNNATC	1 cut(s)	433
BseLI	CCNNNNNNNGG	3 cut(s)	15, 382, 509
BseMII	CTCAG	2 cut(s)	83, 540
BseSI	GKGCMC	1 cut(s)	294
BseXI	GCAGC	4 cut(s)	42, 70, 73, 473
Bsh1236I	CGCG	2 cut(s)	38, 173
Bsh1285I	CGRYCG	1 cut(s)	131
BshFI	GGCC	1 cut(s)	381
BshNI	GGYRCC	1 cut(s)	574
BshVI	ATCGAT	1 cut(s)	433
BsiEI	CGRYCG	1 cut(s)	131
BsiHKAI	GWGCWC	2 cut(s)	77, 204
BsiSI	CCGG	2 cut(s)	131, 382
BslFI	GGGAC	1 cut(s)	272
BslI	CCNNNNNNNGG	3 cut(s)	15, 382, 509
BsmAI	GTCTC	1 cut(s)	375
BsmFI	GGGAC	1 cut(s)	272
BsmI	GAATGC	1 cut(s)	448
BsnI	GGCC	1 cut(s)	381
Bsp1286I	GDGCHC	3 cut(s)	77, 204, 294
Bsp143I	GATC	6 cut(s)	85, 385, 434, 469, 604, 676
Bsp1720I	GCTNAGC	1 cut(s)	92
BspACI	CCGC	4 cut(s)	25, 33, 36, 628
BspANI	GGCC	1 cut(s)	381
BspCNI	CTCAG	2 cut(s)	84, 541
BspDI	ATCGAT	1 cut(s)	433
BspFNI	CGCG	2 cut(s)	38, 173
BspHI	TCATGA	1 cut(s)	619
BspLI	GGNNCC	1 cut(s)	576
BspMAI	CTGCAG	1 cut(s)	60
BspMI	ACCTGC	1 cut(s)	321
BspPI	GGATC	4 cut(s)	93, 393, 464, 599
BspQI	GCTCTTC	1 cut(s)	618
BspT107I	GGYRCC	1 cut(s)	574
BsrBI	CCGCTC	1 cut(s)	628
BssECI	CCNNGG	1 cut(s)	376
BssMI	GATC	6 cut(s)	85, 385, 434, 469, 604, 676
BssNI	GRCGYC	2 cut(s)	325, 575
BssT1I	CCWWGG	1 cut(s)	376
Bst2UI	CCWGG	2 cut(s)	191, 407
Bst4CI	ACNGT	2 cut(s)	226, 369
Bst6I	CTCTTC	1 cut(s)	618
BstACI	GRCGYC	2 cut(s)	325, 575
BstBAI	YACGTR	1 cut(s)	338
BstDEI	CTNAG	2 cut(s)	92, 549
BstENI	CCTNNNNNAGG	1 cut(s)	507
BstF5I	GGATG	1 cut(s)	106
BstFNI	CGCG	2 cut(s)	38, 173
BstH2I	RGCGCY	1 cut(s)	578
BstHHI	GCGC	1 cut(s)	577
BstKTI	GATC	6 cut(s)	88, 388, 437, 472, 607, 679
BstMAI	GTCTC	1 cut(s)	375
BstMBI	GATC	6 cut(s)	85, 385, 434, 469, 604, 676
BstMCI	CGRYCG	1 cut(s)	131
BstMWI	GCNNNNNNNGC	3 cut(s)	61, 289, 512
BstNI	CCWGG	2 cut(s)	191, 407
BstNSI	RCATGY	1 cut(s)	265
BstSCI	CCNGG	3 cut(s)	189, 381, 405
BstSFI	CTRYAG	1 cut(s)	56
BstSLI	GKGCMC	1 cut(s)	294
BstSNI	TACGTA	1 cut(s)	338
BstUI	CGCG	2 cut(s)	38, 173
BstV1I	GCAGC	4 cut(s)	42, 70, 73, 473
BstV2I	GAAGAC	1 cut(s)	123
BstX2I	RGATCY	2 cut(s)	385, 676
BstYI	RGATCY	2 cut(s)	385, 676
Bsu15I	ATCGAT	1 cut(s)	433
BsuI	GTATCC	1 cut(s)	633
BsuRI	GGCC	1 cut(s)	381
BsuTUI	ATCGAT	1 cut(s)	433
BtgZI	GCGATG	1 cut(s)	154
BtsCI	GGATG	1 cut(s)	106
BtsI	GCAGTG	1 cut(s)	278
BtsIMutI	CAGTG	2 cut(s)	278, 365
BveI	ACCTGC	1 cut(s)	321
CaiI	CAGNNNCTG	1 cut(s)	467
CciI	TCATGA	1 cut(s)	619
CfoI	GCGC	1 cut(s)	577
Cfr13I	GGNCC	2 cut(s)	18, 124
ClaI	ATCGAT	1 cut(s)	433
CseI	GACGC	1 cut(s)	162
Csp6I	GTAC	1 cut(s)	49
CspCI	CAANNNNNGTGG	4 cut(s)	516, 551, 552, 587
CviAII	CATG	4 cut(s)	97, 262, 287, 620
CviJI	RGCY	7 cut(s)	75, 91, 381, 398, 464, 650, 662
CviKI_1	RGCY	7 cut(s)	75, 91, 381, 398, 464, 650, 662
CviQI	GTAC	1 cut(s)	49
DdeI	CTNAG	2 cut(s)	92, 549
DinI	GGCGCC	1 cut(s)	576
DpnI	GATC	6 cut(s)	87, 387, 436, 471, 606, 678
DpnII	GATC	6 cut(s)	85, 385, 434, 469, 604, 676
DraI	TTTAAA	1 cut(s)	313
DriI	GACNNNNNGTC	1 cut(s)	172
EaeI	YGGCCR	1 cut(s)	379
Eam1104I	CTCTTC	1 cut(s)	618
Eam1105I	GACNNNNNGTC	1 cut(s)	172
EarI	CTCTTC	1 cut(s)	618
Ecl136II	GAGCTC	1 cut(s)	75
Eco105I	TACGTA	1 cut(s)	338
Eco130I	CCWWGG	1 cut(s)	376
Eco24I	GRGCYC	1 cut(s)	77
Eco32I	GATATC	2 cut(s)	306, 431
Eco47I	GGWCC	2 cut(s)	18, 124
Eco53kI	GAGCTC	1 cut(s)	75
EcoICRI	GAGCTC	1 cut(s)	75
EcoNI	CCTNNNNNAGG	1 cut(s)	507
EcoRI	GAATTC	1 cut(s)	134
EcoRII	CCWGG	2 cut(s)	189, 405
EcoRV	GATATC	2 cut(s)	306, 431
EcoT14I	CCWWGG	1 cut(s)	376
EcoT38I	GRGCYC	1 cut(s)	77
EgeI	GGCGCC	1 cut(s)	576
EheI	GGCGCC	1 cut(s)	576
ErhI	CCWWGG	1 cut(s)	376
FaeI	CATG	4 cut(s)	100, 265, 290, 623
FaiI	YATR	6 cut(s)	98, 263, 273, 288, 585, 621
FalI	AAGNNNNNCTT	2 cut(s)	293, 325
FaqI	GGGAC	1 cut(s)	272
FatI	CATG	4 cut(s)	96, 261, 286, 619
FauI	CCCGC	2 cut(s)	32, 621
Fnu4HI	GCNGC	6 cut(s)	33, 36, 56, 59, 62, 462
FokI	GGATG	1 cut(s)	113
FriOI	GRGCYC	1 cut(s)	77
Fsp4HI	GCNGC	6 cut(s)	33, 36, 56, 59, 62, 462
FspBI	CTAG	1 cut(s)	216
GlaI	GCGC	1 cut(s)	576
GluI	GCNGC	6 cut(s)	33, 36, 56, 59, 62, 462
GsuI	CTGGAG	2 cut(s)	212, 389
HaeII	RGCGCY	1 cut(s)	578
HaeIII	GGCC	1 cut(s)	381
HapII	CCGG	2 cut(s)	131, 382
HgaI	GACGC	1 cut(s)	162
HhaI	GCGC	1 cut(s)	577
Hin1I	GRCGYC	2 cut(s)	325, 575
Hin1II	CATG	4 cut(s)	100, 265, 290, 623
Hin6I	GCGC	1 cut(s)	575
HinP1I	GCGC	1 cut(s)	575
HinfI	GANTC	4 cut(s)	5, 212, 219, 616
HpaII	CCGG	2 cut(s)	131, 382
HphI	GGTGA	2 cut(s)	59, 214
Hpy166II	GTNNAC	1 cut(s)	51
Hpy188I	TCNGA	4 cut(s)	10, 128, 234, 439
Hpy188III	TCNNGA	6 cut(s)	16, 216, 301, 392, 510, 620
Hpy8I	GTNNAC	1 cut(s)	51
Hpy99I	CGWCG	2 cut(s)	178, 330
HpyAV	CCTTC	2 cut(s)	562, 618
HpyCH4III	ACNGT	2 cut(s)	226, 369
HpyCH4IV	ACGT	3 cut(s)	43, 325, 337
HpyCH4V	TGCA	6 cut(s)	58, 283, 461, 506, 563, 673
HpyF10VI	GCNNNNNNNGC	3 cut(s)	61, 289, 512
HpyF3I	CTNAG	2 cut(s)	92, 549
HpySE526I	ACGT	3 cut(s)	43, 325, 337
Hsp92I	GRCGYC	2 cut(s)	325, 575
Hsp92II	CATG	4 cut(s)	100, 265, 290, 623
HspAI	GCGC	1 cut(s)	575
KasI	GGCGCC	1 cut(s)	574
Kzo9I	GATC	6 cut(s)	85, 385, 434, 469, 604, 676
LguI	GCTCTTC	1 cut(s)	618
LmnI	GCTCC	2 cut(s)	80, 512
Lsp1109I	GCAGC	4 cut(s)	42, 70, 73, 473
LweI	GCATC	2 cut(s)	73, 515
MaeI	CTAG	1 cut(s)	216
MaeII	ACGT	3 cut(s)	43, 325, 337
MaeIII	GTNAC	7 cut(s)	220, 250, 333, 451, 483, 538, 701
MalI	GATC	6 cut(s)	87, 387, 436, 471, 606, 678
MbiI	CCGCTC	1 cut(s)	628
MboI	GATC	6 cut(s)	85, 385, 434, 469, 604, 676
MboII	GAAGA	3 cut(s)	128, 380, 635
MflI	RGATCY	2 cut(s)	385, 676
MhlI	GDGCHC	3 cut(s)	77, 204, 294
MluCI	AATT	4 cut(s)	134, 243, 496, 522
Mly113I	GGCGCC	1 cut(s)	575
MlyI	GAGTC	2 cut(s)	228, 625
MmeI	TCCRAC	1 cut(s)	151
MnlI	CCTC	8 cut(s)	31, 38, 103, 115, 151, 187, 388, 544
MseI	TTAA	4 cut(s)	246, 266, 312, 698
MspI	CCGG	2 cut(s)	131, 382
MspR9I	CCNGG	3 cut(s)	191, 383, 407
Mva1269I	GAATGC	1 cut(s)	448
MvaI	CCWGG	2 cut(s)	191, 407
MvnI	CGCG	2 cut(s)	38, 173
MwoI	GCNNNNNNNGC	3 cut(s)	61, 289, 512
NarI	GGCGCC	1 cut(s)	575
NciI	CCSGG	1 cut(s)	383
NdeII	GATC	6 cut(s)	85, 385, 434, 469, 604, 676
NlaIII	CATG	4 cut(s)	100, 265, 290, 623
NlaIV	GGNNCC	1 cut(s)	576
NmuCI	GTSAC	4 cut(s)	220, 451, 483, 701
NspI	RCATGY	1 cut(s)	265
PagI	TCATGA	1 cut(s)	619
PciI	ACATGT	1 cut(s)	261
PciSI	GCTCTTC	1 cut(s)	618
PcsI	WCGNNNNNNNCGW	2 cut(s)	162, 334
PctI	GAATGC	1 cut(s)	448
PfeI	GAWTC	2 cut(s)	5, 212
PflFI	GACNNNGTC	1 cut(s)	122
PkrI	GCNGC	6 cut(s)	34, 37, 57, 60, 63, 463
PleI	GAGTC	2 cut(s)	227, 624
PluTI	GGCGCC	1 cut(s)	578
PpsI	GAGTC	2 cut(s)	227, 624
Ppu21I	YACGTR	1 cut(s)	338
PscI	ACATGT	1 cut(s)	261
Psp124BI	GAGCTC	1 cut(s)	77
Psp6I	CCWGG	2 cut(s)	189, 405
PspGI	CCWGG	2 cut(s)	189, 405
PspN4I	GGNNCC	1 cut(s)	576
PspPI	GGNCC	2 cut(s)	18, 124
PstI	CTGCAG	1 cut(s)	60
PstNI	CAGNNNCTG	1 cut(s)	467
PsuI	RGATCY	2 cut(s)	385, 676
PsyI	GACNNNGTC	1 cut(s)	122
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
SacI	GAGCTC	1 cut(s)	77
SapI	GCTCTTC	1 cut(s)	618
SaqAI	TTAA	4 cut(s)	246, 266, 312, 698
SatI	GCNGC	6 cut(s)	33, 36, 56, 59, 62, 462
Sau3AI	GATC	6 cut(s)	85, 385, 434, 469, 604, 676
Sau96I	GGNCC	2 cut(s)	18, 124
SchI	GAGTC	2 cut(s)	228, 625
ScrFI	CCNGG	3 cut(s)	191, 383, 407
SduI	GDGCHC	3 cut(s)	77, 204, 294
SfaNI	GCATC	2 cut(s)	73, 515
SfcI	CTRYAG	1 cut(s)	56
SfoI	GGCGCC	1 cut(s)	576
SinI	GGWCC	2 cut(s)	18, 124
SmlI	CTYRAG	1 cut(s)	613
SmoI	CTYRAG	1 cut(s)	613
SnaBI	TACGTA	1 cut(s)	338
Sse9I	AATT	4 cut(s)	134, 243, 496, 522
SsiI	CCGC	4 cut(s)	25, 33, 36, 628
SspDI	GGCGCC	1 cut(s)	574
SspMI	CTAG	1 cut(s)	216
SstI	GAGCTC	1 cut(s)	77
StyD4I	CCNGG	3 cut(s)	189, 381, 405
StyI	CCWWGG	1 cut(s)	376
TaaI	ACNGT	2 cut(s)	226, 369
TaiI	ACGT	3 cut(s)	46, 328, 340
TaqI	TCGA	3 cut(s)	108, 165, 433
TasI	AATT	4 cut(s)	134, 243, 496, 522
TatI	WGTACW	1 cut(s)	48
TauI	GCSGC	2 cut(s)	35, 38
TfiI	GAWTC	2 cut(s)	5, 212
Tru1I	TTAA	4 cut(s)	246, 266, 312, 698
Tru9I	TTAA	4 cut(s)	246, 266, 312, 698
TscAI	CASTG	2 cut(s)	285, 372
TseFI	GTSAC	4 cut(s)	220, 451, 483, 701
TseI	GCWGC	4 cut(s)	55, 58, 61, 461
Tsp45I	GTSAC	4 cut(s)	220, 451, 483, 701
TspDTI	ATGAA	2 cut(s)	534, 636
TspGWI	ACGGA	1 cut(s)	135
TspRI	CASTG	2 cut(s)	285, 372
Tth111I	GACNNNGTC	1 cut(s)	122
VpaK11BI	GGWCC	2 cut(s)	18, 124
XagI	CCTNNNNNAGG	1 cut(s)	507
XapI	RAATTY	3 cut(s)	134, 496, 522
XbaI	TCTAGA	1 cut(s)	215
XceI	RCATGY	1 cut(s)	265
XcmI	CCANNNNNNNNNTGG	1 cut(s)	585
XspI	CTAG	1 cut(s)	216
ZraI	GACGTC	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.