Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0012591

Physical Location & Seq

Genomic Coordinates Reverse (-)

5501413 .. 5504016

Gene Structure 2604 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG066700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGATGATTTCGAGGTGGAAGACAAGGTCCGACCGGACTTCCCGTGTCCGTATTGCTACGAGGACTTAGACATCGCGTCGTTGTGTTCGCACCTGGAGGACGAGCACCCGTGCGAATCTAGAGTCACCGTTTGTCCGATTTGCTCAATTAAAGTTACACGAGACATGTTAAGTCATATTACACTGCAACATGGGCACTTGTTCAAGATATCCTTTAAACCTGAAAGACGTCGCAGGTTACGTAGGGTTGCTGTTCCTAATAGTCAAGCACTGTCTCTCCTTGGCCGGGATCTTCGTGAGGCTCATCTCCAGGTGCTTTTAGGGAGTGGGGGATATCGATCAGAGAATGCTAATGTCACTAATGCAGCTACTGATCCATTCCTGTCATCACTTATTTTGAATTTCCCTGCATCAGGAGCAGATGAAATTTCAAAATCTGTGGTAACAACTGCTGAGGACACTCCTGCAAAGAAGTTGGCGCCATCACATATTTGGAAATCAAGTTTTGATCCTTCCTTGAGTCATGAAGAGCGGGAGAAAAGGATACAACAAGCTACGGGGAGAGCTGGTTTTGTGCAAGATCTGTTTCTCTCTAAAATGTTAAGTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Di19_C zf-Di19

Protein Analysis

203

Amino Acids

22.77

Weight (kDa)

6.07

Isoelectric Point (pI)

49.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-Di19	PF05605	13 - 65	8e-23	Drought induced 19 protein (Di19), zinc-binding
Di19_C	PF14571	91 - 199	2.9e-29	Stress-induced protein Di19, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012591)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g08710 FvH4_3g08710
malus_domestica	MD05G1310900.v1.1 MD10G1290000.v1.1
prunus_persica	Prupe.4G051700_v2.0.a1 Prupe.4G051700_v2.0.a1
pyrus_communis	pycom10g24230
rosa_chinensis	RchiOBHm_Chr5g0009071
rosa_laevigata	RLG00000031627
rosa_multiflora	Rmu_sc0002034.1_g000010
rosa_roxburghii	Rroxscaffold_1G00066960 Rroxscaffold_1G00067630
rosa_rugosa	Rorug04G0440900
rosa_samantha	Rh5AG070000 Rh5BG066700 Rh5BG066900 Rh5CG078100 Rh5DG066200
rosa_wichuraiana	Rw5G006550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	232
Acc36I	ACCTGC	1 cut(s)	225
AccB1I	GGYRCC	1 cut(s)	478
AccBSI	CCGCTC	1 cut(s)	532
AccII	CGCG	1 cut(s)	77
AciI	CCGC	1 cut(s)	532
AclWI	GGATC	3 cut(s)	297, 368, 503
AcoI	YGGCCR	1 cut(s)	283
AcsI	RAATTY	2 cut(s)	400, 426
AcyI	GRCGYC	2 cut(s)	229, 479
AfiI	CCNNNNNNNGG	2 cut(s)	286, 413
AflIII	ACRYGT	1 cut(s)	165
AgsI	TTSAA	3 cut(s)	205, 400, 432
AhdI	GACNNNNNGTC	1 cut(s)	76
AjnI	CCWGG	2 cut(s)	93, 309
AluBI	AGCT	3 cut(s)	368, 554, 566
AluI	AGCT	3 cut(s)	368, 554, 566
Alw21I	GWGCWC	1 cut(s)	108
Alw26I	GTCTC	2 cut(s)	156, 279
AlwI	GGATC	3 cut(s)	297, 368, 503
AlwNI	CAGNNNCTG	1 cut(s)	371
AoxI	GGCC	1 cut(s)	283
ApeKI	GCWGC	1 cut(s)	365
ApoI	RAATTY	2 cut(s)	400, 426
ArsI	GACNNNNNNTTYG	2 cut(s)	108, 140
AspLEI	GCGC	1 cut(s)	481
AspS9I	GGNCC	1 cut(s)	28
AsuC2I	CCSGG	1 cut(s)	287
AsuHPI	GGTGA	1 cut(s)	118
AvaII	GGWCC	1 cut(s)	28
BaeGI	GKGCMC	1 cut(s)	198
BanI	GGYRCC	1 cut(s)	478
BauI	CACGAG	1 cut(s)	159
BbsI	GAAGAC	1 cut(s)	27
Bbv12I	GWGCWC	1 cut(s)	108
BbvCI	CCTCAGC	1 cut(s)	453
BbvI	GCAGC	1 cut(s)	377
BccI	CCATC	1 cut(s)	490
BciT130I	CCWGG	2 cut(s)	95, 311
BciVI	GTATCC	1 cut(s)	537
BcnI	CCSGG	1 cut(s)	287
BcoDI	GTCTC	2 cut(s)	156, 279
BfaI	CTAG	1 cut(s)	120
BfoI	RGCGCY	1 cut(s)	482
BfuAI	ACCTGC	1 cut(s)	225
BfuI	GTATCC	1 cut(s)	537
BglII	AGATCT	1 cut(s)	580
BisI	GCNGC	1 cut(s)	366
BlsI	GCNGC	1 cut(s)	367
Bme1390I	CCNGG	3 cut(s)	95, 287, 311
Bme18I	GGWCC	1 cut(s)	28
BmeRI	GACNNNNNGTC	1 cut(s)	76
BmgT120I	GGNCC	1 cut(s)	28
BmiI	GGNNCC	1 cut(s)	480
BmrFI	CCNGG	3 cut(s)	95, 287, 311
BmsI	GCATC	1 cut(s)	419
BpiI	GAAGAC	1 cut(s)	27
BpmI	CTGGAG	2 cut(s)	116, 293
Bpu10I	CCTNAGC	1 cut(s)	453
BpuEI	CTTGAG	1 cut(s)	538
BpuMI	CCSGG	1 cut(s)	287
Bsa29I	ATCGAT	1 cut(s)	337
BsaAI	YACGTR	1 cut(s)	242
BsaBI	GATNNNNATC	1 cut(s)	337
BsaHI	GRCGYC	2 cut(s)	229, 479
BsaJI	CCNNGG	1 cut(s)	280
BsaWI	WCCGGW	1 cut(s)	34
BsaXI	ACNNNNNCTCC	4 cut(s)	261, 291, 553, 583
Bsc4I	CCNNNNNNNGG	2 cut(s)	286, 413
Bse8I	GATNNNNATC	1 cut(s)	337
BseBI	CCWGG	2 cut(s)	95, 311
BseCI	ATCGAT	1 cut(s)	337
BseDI	CCNNGG	1 cut(s)	280
BseGI	GGATG	1 cut(s)	10
BseJI	GATNNNNATC	1 cut(s)	337
BseLI	CCNNNNNNNGG	2 cut(s)	286, 413
BseMII	CTCAG	1 cut(s)	444
BseSI	GKGCMC	1 cut(s)	198
BseXI	GCAGC	1 cut(s)	377
Bsh1236I	CGCG	1 cut(s)	77
Bsh1285I	CGRYCG	1 cut(s)	35
BshFI	GGCC	1 cut(s)	285
BshNI	GGYRCC	1 cut(s)	478
BshVI	ATCGAT	1 cut(s)	337
BsiEI	CGRYCG	1 cut(s)	35
BsiHKAI	GWGCWC	1 cut(s)	108
BsiSI	CCGG	2 cut(s)	35, 286
BslI	CCNNNNNNNGG	2 cut(s)	286, 413
BsmAI	GTCTC	2 cut(s)	156, 279
BsmI	GAATGC	1 cut(s)	352
BsnI	GGCC	1 cut(s)	285
Bsp1286I	GDGCHC	2 cut(s)	108, 198
Bsp143I	GATC	5 cut(s)	289, 338, 373, 508, 580
BspACI	CCGC	1 cut(s)	532
BspANI	GGCC	1 cut(s)	285
BspCNI	CTCAG	1 cut(s)	445
BspDI	ATCGAT	1 cut(s)	337
BspFNI	CGCG	1 cut(s)	77
BspHI	TCATGA	1 cut(s)	523
BspLI	GGNNCC	1 cut(s)	480
BspMI	ACCTGC	1 cut(s)	225
BspPI	GGATC	3 cut(s)	297, 368, 503
BspQI	GCTCTTC	1 cut(s)	522
BspT107I	GGYRCC	1 cut(s)	478
BsrBI	CCGCTC	1 cut(s)	532
BssECI	CCNNGG	1 cut(s)	280
BssMI	GATC	5 cut(s)	289, 338, 373, 508, 580
BssNI	GRCGYC	2 cut(s)	229, 479
BssSI	CACGAG	1 cut(s)	159
BssT1I	CCWWGG	1 cut(s)	280
Bst2BI	CACGAG	1 cut(s)	159
Bst2UI	CCWGG	2 cut(s)	95, 311
Bst4CI	ACNGT	2 cut(s)	130, 273
Bst6I	CTCTTC	1 cut(s)	522
BstACI	GRCGYC	2 cut(s)	229, 479
BstBAI	YACGTR	1 cut(s)	242
BstDEI	CTNAG	2 cut(s)	67, 453
BstENI	CCTNNNNNAGG	1 cut(s)	411
BstF5I	GGATG	1 cut(s)	10
BstFNI	CGCG	1 cut(s)	77
BstH2I	RGCGCY	1 cut(s)	482
BstHHI	GCGC	1 cut(s)	481
BstKTI	GATC	5 cut(s)	292, 341, 376, 511, 583
BstMAI	GTCTC	2 cut(s)	156, 279
BstMBI	GATC	5 cut(s)	289, 338, 373, 508, 580
BstMCI	CGRYCG	1 cut(s)	35
BstMWI	GCNNNNNNNGC	2 cut(s)	193, 416
BstNI	CCWGG	2 cut(s)	95, 311
BstNSI	RCATGY	1 cut(s)	169
BstSCI	CCNGG	3 cut(s)	93, 285, 309
BstSLI	GKGCMC	1 cut(s)	198
BstSNI	TACGTA	1 cut(s)	242
BstUI	CGCG	1 cut(s)	77
BstV1I	GCAGC	1 cut(s)	377
BstV2I	GAAGAC	1 cut(s)	27
BstX2I	RGATCY	2 cut(s)	289, 580
BstYI	RGATCY	2 cut(s)	289, 580
Bsu15I	ATCGAT	1 cut(s)	337
BsuI	GTATCC	1 cut(s)	537
BsuRI	GGCC	1 cut(s)	285
BsuTUI	ATCGAT	1 cut(s)	337
BtgZI	GCGATG	1 cut(s)	58
BtsCI	GGATG	1 cut(s)	10
BtsI	GCAGTG	1 cut(s)	182
BtsIMutI	CAGTG	2 cut(s)	182, 269
BveI	ACCTGC	1 cut(s)	225
CaiI	CAGNNNCTG	1 cut(s)	371
CciI	TCATGA	1 cut(s)	523
CfoI	GCGC	1 cut(s)	481
Cfr13I	GGNCC	1 cut(s)	28
ClaI	ATCGAT	1 cut(s)	337
CseI	GACGC	1 cut(s)	66
CspCI	CAANNNNNGTGG	2 cut(s)	420, 455
CviAII	CATG	3 cut(s)	166, 191, 524
CviJI	RGCY	5 cut(s)	285, 302, 368, 554, 566
CviKI_1	RGCY	5 cut(s)	285, 302, 368, 554, 566
DdeI	CTNAG	2 cut(s)	67, 453
DinI	GGCGCC	1 cut(s)	480
DpnI	GATC	5 cut(s)	291, 340, 375, 510, 582
DpnII	GATC	5 cut(s)	289, 338, 373, 508, 580
DraI	TTTAAA	1 cut(s)	217
DriI	GACNNNNNGTC	1 cut(s)	76
EaeI	YGGCCR	1 cut(s)	283
Eam1104I	CTCTTC	1 cut(s)	522
Eam1105I	GACNNNNNGTC	1 cut(s)	76
EarI	CTCTTC	1 cut(s)	522
Eco105I	TACGTA	1 cut(s)	242
Eco130I	CCWWGG	1 cut(s)	280
Eco32I	GATATC	2 cut(s)	210, 335
Eco47I	GGWCC	1 cut(s)	28
EcoNI	CCTNNNNNAGG	1 cut(s)	411
EcoRII	CCWGG	2 cut(s)	93, 309
EcoRV	GATATC	2 cut(s)	210, 335
EcoT14I	CCWWGG	1 cut(s)	280
EgeI	GGCGCC	1 cut(s)	480
EheI	GGCGCC	1 cut(s)	480
ErhI	CCWWGG	1 cut(s)	280
FaeI	CATG	3 cut(s)	169, 194, 527
FaiI	YATR	5 cut(s)	167, 177, 192, 489, 525
FalI	AAGNNNNNCTT	2 cut(s)	197, 229
FatI	CATG	3 cut(s)	165, 190, 523
FauI	CCCGC	1 cut(s)	525
Fnu4HI	GCNGC	1 cut(s)	366
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	1 cut(s)	366
FspBI	CTAG	1 cut(s)	120
GlaI	GCGC	1 cut(s)	480
GluI	GCNGC	1 cut(s)	366
GsuI	CTGGAG	2 cut(s)	116, 293
HaeII	RGCGCY	1 cut(s)	482
HaeIII	GGCC	1 cut(s)	285
HapII	CCGG	2 cut(s)	35, 286
HgaI	GACGC	1 cut(s)	66
HhaI	GCGC	1 cut(s)	481
Hin1I	GRCGYC	2 cut(s)	229, 479
Hin1II	CATG	3 cut(s)	169, 194, 527
Hin6I	GCGC	1 cut(s)	479
HinP1I	GCGC	1 cut(s)	479
HinfI	GANTC	3 cut(s)	116, 123, 520
HpaII	CCGG	2 cut(s)	35, 286
HphI	GGTGA	1 cut(s)	118
Hpy188I	TCNGA	3 cut(s)	32, 138, 343
Hpy188III	TCNNGA	5 cut(s)	120, 205, 296, 414, 524
Hpy99I	CGWCG	2 cut(s)	82, 234
HpyAV	CCTTC	1 cut(s)	522
HpyCH4III	ACNGT	2 cut(s)	130, 273
HpyCH4IV	ACGT	2 cut(s)	229, 241
HpyCH4V	TGCA	5 cut(s)	187, 365, 410, 467, 577
HpyF10VI	GCNNNNNNNGC	2 cut(s)	193, 416
HpyF3I	CTNAG	2 cut(s)	67, 453
HpySE526I	ACGT	2 cut(s)	229, 241
Hsp92I	GRCGYC	2 cut(s)	229, 479
Hsp92II	CATG	3 cut(s)	169, 194, 527
HspAI	GCGC	1 cut(s)	479
KasI	GGCGCC	1 cut(s)	478
Kzo9I	GATC	5 cut(s)	289, 338, 373, 508, 580
LguI	GCTCTTC	1 cut(s)	522
LmnI	GCTCC	1 cut(s)	416
Lsp1109I	GCAGC	1 cut(s)	377
LweI	GCATC	1 cut(s)	419
MaeI	CTAG	1 cut(s)	120
MaeII	ACGT	2 cut(s)	229, 241
MaeIII	GTNAC	6 cut(s)	124, 154, 237, 355, 442, 605
MalI	GATC	5 cut(s)	291, 340, 375, 510, 582
MbiI	CCGCTC	1 cut(s)	532
MboI	GATC	5 cut(s)	289, 338, 373, 508, 580
MboII	GAAGA	3 cut(s)	32, 284, 539
MflI	RGATCY	2 cut(s)	289, 580
MhlI	GDGCHC	2 cut(s)	108, 198
MluCI	AATT	3 cut(s)	147, 400, 426
Mly113I	GGCGCC	1 cut(s)	479
MlyI	GAGTC	2 cut(s)	132, 529
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	5 cut(s)	7, 55, 91, 292, 448
MseI	TTAA	4 cut(s)	150, 170, 216, 602
MspI	CCGG	2 cut(s)	35, 286
MspR9I	CCNGG	3 cut(s)	95, 287, 311
Mva1269I	GAATGC	1 cut(s)	352
MvaI	CCWGG	2 cut(s)	95, 311
MvnI	CGCG	1 cut(s)	77
MwoI	GCNNNNNNNGC	2 cut(s)	193, 416
NarI	GGCGCC	1 cut(s)	479
NciI	CCSGG	1 cut(s)	287
NdeII	GATC	5 cut(s)	289, 338, 373, 508, 580
NlaIII	CATG	3 cut(s)	169, 194, 527
NlaIV	GGNNCC	1 cut(s)	480
NmuCI	GTSAC	3 cut(s)	124, 355, 605
NspI	RCATGY	1 cut(s)	169
PagI	TCATGA	1 cut(s)	523
PciI	ACATGT	1 cut(s)	165
PciSI	GCTCTTC	1 cut(s)	522
PcsI	WCGNNNNNNNCGW	1 cut(s)	238
PctI	GAATGC	1 cut(s)	352
PfeI	GAWTC	1 cut(s)	116
PflFI	GACNNNGTC	1 cut(s)	26
PkrI	GCNGC	1 cut(s)	367
PleI	GAGTC	2 cut(s)	131, 528
PluTI	GGCGCC	1 cut(s)	482
PpsI	GAGTC	2 cut(s)	131, 528
Ppu21I	YACGTR	1 cut(s)	242
PscI	ACATGT	1 cut(s)	165
Psp6I	CCWGG	2 cut(s)	93, 309
PspGI	CCWGG	2 cut(s)	93, 309
PspN4I	GGNNCC	1 cut(s)	480
PspPI	GGNCC	1 cut(s)	28
PstNI	CAGNNNCTG	1 cut(s)	371
PsuI	RGATCY	2 cut(s)	289, 580
PsyI	GACNNNGTC	1 cut(s)	26
SapI	GCTCTTC	1 cut(s)	522
SaqAI	TTAA	4 cut(s)	150, 170, 216, 602
SatI	GCNGC	1 cut(s)	366
Sau3AI	GATC	5 cut(s)	289, 338, 373, 508, 580
Sau96I	GGNCC	1 cut(s)	28
SchI	GAGTC	2 cut(s)	132, 529
ScrFI	CCNGG	3 cut(s)	95, 287, 311
SduI	GDGCHC	2 cut(s)	108, 198
SfaNI	GCATC	1 cut(s)	419
SfoI	GGCGCC	1 cut(s)	480
SinI	GGWCC	1 cut(s)	28
SmlI	CTYRAG	1 cut(s)	517
SmoI	CTYRAG	1 cut(s)	517
SnaBI	TACGTA	1 cut(s)	242
Sse9I	AATT	3 cut(s)	147, 400, 426
SsiI	CCGC	1 cut(s)	532
SspDI	GGCGCC	1 cut(s)	478
SspMI	CTAG	1 cut(s)	120
StyD4I	CCNGG	3 cut(s)	93, 285, 309
StyI	CCWWGG	1 cut(s)	280
TaaI	ACNGT	2 cut(s)	130, 273
TaiI	ACGT	2 cut(s)	232, 244
TaqI	TCGA	2 cut(s)	12, 337
TasI	AATT	3 cut(s)	147, 400, 426
TfiI	GAWTC	1 cut(s)	116
Tru1I	TTAA	4 cut(s)	150, 170, 216, 602
Tru9I	TTAA	4 cut(s)	150, 170, 216, 602
TscAI	CASTG	2 cut(s)	189, 276
TseFI	GTSAC	3 cut(s)	124, 355, 605
TseI	GCWGC	1 cut(s)	365
Tsp45I	GTSAC	3 cut(s)	124, 355, 605
TspDTI	ATGAA	2 cut(s)	438, 540
TspGWI	ACGGA	1 cut(s)	39
TspRI	CASTG	2 cut(s)	189, 276
Tth111I	GACNNNGTC	1 cut(s)	26
VpaK11BI	GGWCC	1 cut(s)	28
XagI	CCTNNNNNAGG	1 cut(s)	411
XapI	RAATTY	2 cut(s)	400, 426
XbaI	TCTAGA	1 cut(s)	119
XceI	RCATGY	1 cut(s)	169
XcmI	CCANNNNNNNNNTGG	1 cut(s)	489
XspI	CTAG	1 cut(s)	120
ZraI	GACGTC	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.