Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0012591

Physical Location & Seq

Genomic Coordinates Reverse (-)

2475942 .. 2479316

Gene Structure 3375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G051700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGACTCTGAGTTCTGGACCTCCCGCCTCGCCGCCGCCAAGCGCCAGTACACGTTGCAGCACCATCACCAGAGCTCCCACTTTGATCGGTTAAGCATCGATGATTTCGAGGTTGAAGACGAGGTCCGACCCGACTTCCCGTGCCCGTATTGTTACGAAGACTTCGACATCGCGTCCTTGTGCTCACACCTCGAAGACGAGCACTCGTGCGAATCTAAAGTCACCGTTTGTCCCATTTGCTCTGTTAAAGTTGCACGGGACATGTTAAGTCATATCACACTGCAACATGGACATTTGTTCAAGTTGCAGAGACGTCGCAGGTTACGTAGAGTTGCTATTCCTAACAGTCAGGCACTGTCCCTCCTTGGCCGGGATCTTCGTGAGGCTCATCTTCAGGTGCTTCTAGGGAGTGGTGGATATCGATCAGACAATGCTAATGTGTCTAATGCTGCTACCGATCCATTCCTGTCATCACTTATTTTGAATTTCCCTGCATCAGGAGCAGATGAAATTTCAAAATCTGTGGTAACCACTGCTGAGGACATTTCTGCAAAGAATGTGGCACCGGCACATATTTGGAAATCAAGTTTTGATCCGTCATTGAGTTATGAAGAGAGGGCGAAAAGGATTCGACAAGCTACTGGAAGAGCTGGTTTTATGCAAGATCTGTTTCTCTCGACACTGTTAGGTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Di19_C zf-Di19

Protein Analysis

232

Amino Acids

25.99

Weight (kDa)

6.11

Isoelectric Point (pI)

52.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012591)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g08710 FvH4_3g08710
malus_domestica	MD05G1310900.v1.1 MD10G1290000.v1.1
prunus_persica	Prupe.4G051700_v2.0.a1 Prupe.4G051700_v2.0.a1
pyrus_communis	pycom10g24230
rosa_chinensis	RchiOBHm_Chr5g0009071
rosa_laevigata	RLG00000031627
rosa_multiflora	Rmu_sc0002034.1_g000010
rosa_roxburghii	Rroxscaffold_1G00066960 Rroxscaffold_1G00067630
rosa_rugosa	Rorug04G0440900
rosa_samantha	Rh5AG070000 Rh5BG066700 Rh5BG066900 Rh5CG078100 Rh5DG066200
rosa_wichuraiana	Rw5G006550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	316
Acc36I	ACCTGC	1 cut(s)	309
AccB1I	GGYRCC	1 cut(s)	562
AccII	CGCG	1 cut(s)	173
AciI	CCGC	3 cut(s)	25, 33, 36
AclWI	GGATC	3 cut(s)	381, 452, 587
AcoI	YGGCCR	1 cut(s)	367
AcsI	RAATTY	2 cut(s)	484, 510
AcuI	CTGAAG	1 cut(s)	377
AcyI	GRCGYC	1 cut(s)	313
AfaI	GTAC	1 cut(s)	50
AfiI	CCNNNNNNNGG	2 cut(s)	370, 497
AflIII	ACRYGT	2 cut(s)	51, 261
AgsI	TTSAA	4 cut(s)	116, 301, 484, 516
AhdI	GACNNNNNGTC	1 cut(s)	172
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	3 cut(s)	75, 638, 650
AluI	AGCT	3 cut(s)	75, 638, 650
Alw21I	GWGCWC	3 cut(s)	77, 185, 204
Alw26I	GTCTC	1 cut(s)	304
AlwI	GGATC	3 cut(s)	381, 452, 587
AlwNI	CAGNNNCTG	1 cut(s)	355
AoxI	GGCC	1 cut(s)	367
ApeKI	GCWGC	2 cut(s)	58, 449
ApoI	RAATTY	2 cut(s)	484, 510
ArsI	GACNNNNNNTTYG	2 cut(s)	204, 236
AspLEI	GCGC	1 cut(s)	45
AspS9I	GGNCC	2 cut(s)	18, 124
AsuC2I	CCSGG	1 cut(s)	371
AsuHPI	GGTGA	2 cut(s)	59, 214
AvaII	GGWCC	2 cut(s)	18, 124
BaeGI	GKGCMC	1 cut(s)	146
BanI	GGYRCC	1 cut(s)	562
BanII	GRGCYC	1 cut(s)	77
BauI	CACGAG	1 cut(s)	205
BbsI	GAAGAC	3 cut(s)	123, 165, 201
Bbv12I	GWGCWC	3 cut(s)	77, 185, 204
BbvCI	CCTCAGC	1 cut(s)	537
BbvI	GCAGC	2 cut(s)	70, 436
BccI	CCATC	1 cut(s)	72
BcgI	CGANNNNNNTGC	2 cut(s)	296, 330
BcnI	CCSGG	1 cut(s)	371
BcoDI	GTCTC	1 cut(s)	304
BfaI	CTAG	1 cut(s)	404
BfoI	RGCGCY	1 cut(s)	46
BfuAI	ACCTGC	1 cut(s)	309
BglII	AGATCT	1 cut(s)	664
BisI	GCNGC	4 cut(s)	33, 36, 59, 450
BlsI	GCNGC	4 cut(s)	34, 37, 60, 451
Bme1390I	CCNGG	1 cut(s)	371
Bme18I	GGWCC	2 cut(s)	18, 124
BmeRI	GACNNNNNGTC	1 cut(s)	172
BmgT120I	GGNCC	2 cut(s)	18, 124
BmiI	GGNNCC	1 cut(s)	564
BmrFI	CCNGG	1 cut(s)	371
BmsI	GCATC	2 cut(s)	105, 503
BpiI	GAAGAC	3 cut(s)	123, 165, 201
Bpu10I	CCTNAGC	1 cut(s)	537
BpuMI	CCSGG	1 cut(s)	371
Bsa29I	ATCGAT	2 cut(s)	99, 421
BsaAI	YACGTR	1 cut(s)	326
BsaBI	GATNNNNATC	1 cut(s)	421
BsaHI	GRCGYC	1 cut(s)	313
BsaJI	CCNNGG	1 cut(s)	364
BsaXI	ACNNNNNCTCC	4 cut(s)	59, 89, 345, 375
Bsc4I	CCNNNNNNNGG	2 cut(s)	370, 497
Bse118I	RCCGGY	1 cut(s)	565
Bse1I	ACTGG	2 cut(s)	46, 646
Bse8I	GATNNNNATC	1 cut(s)	421
BseCI	ATCGAT	2 cut(s)	99, 421
BseDI	CCNNGG	1 cut(s)	364
BseJI	GATNNNNATC	1 cut(s)	421
BseLI	CCNNNNNNNGG	2 cut(s)	370, 497
BseMII	CTCAG	1 cut(s)	528
BseNI	ACTGG	2 cut(s)	46, 646
BseSI	GKGCMC	1 cut(s)	146
BseXI	GCAGC	2 cut(s)	70, 436
Bsh1236I	CGCG	1 cut(s)	173
BshFI	GGCC	1 cut(s)	369
BshNI	GGYRCC	1 cut(s)	562
BshVI	ATCGAT	2 cut(s)	99, 421
BsiHKAI	GWGCWC	3 cut(s)	77, 185, 204
BsiSI	CCGG	2 cut(s)	370, 566
BslFI	GGGAC	3 cut(s)	216, 272, 343
BslI	CCNNNNNNNGG	2 cut(s)	370, 497
BsmAI	GTCTC	1 cut(s)	304
BsmBI	CGTCTC	1 cut(s)	304
BsmFI	GGGAC	3 cut(s)	216, 272, 343
BsnI	GGCC	1 cut(s)	369
Bsp1286I	GDGCHC	4 cut(s)	77, 146, 185, 204
Bsp143I	GATC	6 cut(s)	85, 373, 422, 457, 592, 664
BspACI	CCGC	3 cut(s)	25, 33, 36
BspANI	GGCC	1 cut(s)	369
BspCNI	CTCAG	1 cut(s)	529
BspDI	ATCGAT	2 cut(s)	99, 421
BspFNI	CGCG	1 cut(s)	173
BspLI	GGNNCC	1 cut(s)	564
BspMI	ACCTGC	1 cut(s)	309
BspPI	GGATC	3 cut(s)	381, 452, 587
BspQI	GCTCTTC	1 cut(s)	640
BspT107I	GGYRCC	1 cut(s)	562
BsrFI	RCCGGY	1 cut(s)	565
BsrI	ACTGG	2 cut(s)	46, 646
BssAI	RCCGGY	1 cut(s)	565
BssECI	CCNNGG	1 cut(s)	364
BssMI	GATC	6 cut(s)	85, 373, 422, 457, 592, 664
BssNI	GRCGYC	1 cut(s)	313
BssSI	CACGAG	1 cut(s)	205
BssT1I	CCWWGG	1 cut(s)	364
Bst2BI	CACGAG	1 cut(s)	205
Bst4CI	ACNGT	4 cut(s)	226, 347, 357, 684
Bst6I	CTCTTC	2 cut(s)	606, 640
BstACI	GRCGYC	1 cut(s)	313
BstBAI	YACGTR	1 cut(s)	326
BstDEI	CTNAG	2 cut(s)	9, 537
BstEII	GGTNACC	1 cut(s)	526
BstENI	CCTNNNNNAGG	1 cut(s)	495
BstFNI	CGCG	1 cut(s)	173
BstH2I	RGCGCY	1 cut(s)	46
BstHHI	GCGC	1 cut(s)	45
BstKTI	GATC	6 cut(s)	88, 376, 425, 460, 595, 667
BstMAI	GTCTC	1 cut(s)	304
BstMBI	GATC	6 cut(s)	85, 373, 422, 457, 592, 664
BstMWI	GCNNNNNNNGC	1 cut(s)	500
BstNSI	RCATGY	1 cut(s)	265
BstPI	GGTNACC	1 cut(s)	526
BstSCI	CCNGG	1 cut(s)	369
BstSLI	GKGCMC	1 cut(s)	146
BstSNI	TACGTA	1 cut(s)	326
BstUI	CGCG	1 cut(s)	173
BstV1I	GCAGC	2 cut(s)	70, 436
BstV2I	GAAGAC	3 cut(s)	123, 165, 201
BstX2I	RGATCY	2 cut(s)	373, 664
BstYI	RGATCY	2 cut(s)	373, 664
Bsu15I	ATCGAT	2 cut(s)	99, 421
BsuRI	GGCC	1 cut(s)	369
BsuTUI	ATCGAT	2 cut(s)	99, 421
BtgZI	GCGATG	1 cut(s)	154
BtsI	GCAGTG	2 cut(s)	278, 531
BtsIMutI	CAGTG	4 cut(s)	278, 353, 531, 680
BveI	ACCTGC	1 cut(s)	309
CaiI	CAGNNNCTG	1 cut(s)	355
CfoI	GCGC	1 cut(s)	45
Cfr10I	RCCGGY	1 cut(s)	565
Cfr13I	GGNCC	2 cut(s)	18, 124
ClaI	ATCGAT	2 cut(s)	99, 421
CseI	GACGC	1 cut(s)	162
Csp6I	GTAC	1 cut(s)	49
CspCI	CAANNNNNGTGG	4 cut(s)	504, 539, 540, 575
CviAII	CATG	2 cut(s)	262, 287
CviJI	RGCY	5 cut(s)	75, 369, 386, 638, 650
CviKI_1	RGCY	5 cut(s)	75, 369, 386, 638, 650
CviQI	GTAC	1 cut(s)	49
DdeI	CTNAG	2 cut(s)	9, 537
DpnI	GATC	6 cut(s)	87, 375, 424, 459, 594, 666
DpnII	GATC	6 cut(s)	85, 373, 422, 457, 592, 664
DriI	GACNNNNNGTC	1 cut(s)	172
EaeI	YGGCCR	1 cut(s)	367
Eam1104I	CTCTTC	2 cut(s)	606, 640
Eam1105I	GACNNNNNGTC	1 cut(s)	172
EarI	CTCTTC	2 cut(s)	606, 640
Ecl136II	GAGCTC	1 cut(s)	75
Eco105I	TACGTA	1 cut(s)	326
Eco130I	CCWWGG	1 cut(s)	364
Eco24I	GRGCYC	1 cut(s)	77
Eco32I	GATATC	1 cut(s)	419
Eco47I	GGWCC	2 cut(s)	18, 124
Eco53kI	GAGCTC	1 cut(s)	75
Eco57I	CTGAAG	1 cut(s)	377
Eco91I	GGTNACC	1 cut(s)	526
EcoICRI	GAGCTC	1 cut(s)	75
EcoNI	CCTNNNNNAGG	1 cut(s)	495
EcoO65I	GGTNACC	1 cut(s)	526
EcoRV	GATATC	1 cut(s)	419
EcoT14I	CCWWGG	1 cut(s)	364
EcoT38I	GRGCYC	1 cut(s)	77
ErhI	CCWWGG	1 cut(s)	364
Esp3I	CGTCTC	1 cut(s)	304
FaeI	CATG	2 cut(s)	265, 290
FaiI	YATR	6 cut(s)	263, 273, 288, 573, 609, 659
FaqI	GGGAC	3 cut(s)	216, 272, 343
FatI	CATG	2 cut(s)	261, 286
FauI	CCCGC	1 cut(s)	32
Fnu4HI	GCNGC	4 cut(s)	33, 36, 59, 450
FriOI	GRGCYC	1 cut(s)	77
Fsp4HI	GCNGC	4 cut(s)	33, 36, 59, 450
FspBI	CTAG	1 cut(s)	404
GlaI	GCGC	1 cut(s)	44
GluI	GCNGC	4 cut(s)	33, 36, 59, 450
HaeII	RGCGCY	1 cut(s)	46
HaeIII	GGCC	1 cut(s)	369
HapII	CCGG	2 cut(s)	370, 566
HgaI	GACGC	1 cut(s)	162
HhaI	GCGC	1 cut(s)	45
Hin1I	GRCGYC	1 cut(s)	313
Hin1II	CATG	2 cut(s)	265, 290
Hin6I	GCGC	1 cut(s)	43
HinP1I	GCGC	1 cut(s)	43
HinfI	GANTC	3 cut(s)	5, 212, 628
HpaII	CCGG	2 cut(s)	370, 566
HphI	GGTGA	2 cut(s)	59, 214
Hpy166II	GTNNAC	1 cut(s)	51
Hpy188I	TCNGA	3 cut(s)	10, 128, 427
Hpy188III	TCNNGA	4 cut(s)	16, 380, 498, 676
Hpy8I	GTNNAC	1 cut(s)	51
Hpy99I	CGWCG	1 cut(s)	318
HpyCH4III	ACNGT	4 cut(s)	226, 347, 357, 684
HpyCH4IV	ACGT	3 cut(s)	53, 313, 325
HpyCH4V	TGCA	7 cut(s)	58, 254, 283, 307, 494, 551, 661
HpyF10VI	GCNNNNNNNGC	1 cut(s)	500
HpyF3I	CTNAG	2 cut(s)	9, 537
HpySE526I	ACGT	3 cut(s)	53, 313, 325
Hsp92I	GRCGYC	1 cut(s)	313
Hsp92II	CATG	2 cut(s)	265, 290
HspAI	GCGC	1 cut(s)	43
Kzo9I	GATC	6 cut(s)	85, 373, 422, 457, 592, 664
LguI	GCTCTTC	1 cut(s)	640
LmnI	GCTCC	2 cut(s)	80, 500
Lsp1109I	GCAGC	2 cut(s)	70, 436
LweI	GCATC	2 cut(s)	105, 503
MaeI	CTAG	1 cut(s)	404
MaeII	ACGT	3 cut(s)	53, 313, 325
MaeIII	GTNAC	5 cut(s)	152, 220, 321, 526, 689
MalI	GATC	6 cut(s)	87, 375, 424, 459, 594, 666
MboI	GATC	6 cut(s)	85, 373, 422, 457, 592, 664
MboII	GAAGA	7 cut(s)	128, 170, 206, 368, 383, 623, 657
MflI	RGATCY	2 cut(s)	373, 664
MhlI	GDGCHC	4 cut(s)	77, 146, 185, 204
MluCI	AATT	2 cut(s)	484, 510
MmeI	TCCRAC	1 cut(s)	151
MnlI	CCTC	9 cut(s)	31, 38, 103, 115, 200, 371, 376, 532, 609
MseI	TTAA	3 cut(s)	92, 246, 266
MspI	CCGG	2 cut(s)	370, 566
MspR9I	CCNGG	1 cut(s)	371
MvnI	CGCG	1 cut(s)	173
MwoI	GCNNNNNNNGC	1 cut(s)	500
NciI	CCSGG	1 cut(s)	371
NdeII	GATC	6 cut(s)	85, 373, 422, 457, 592, 664
NlaIII	CATG	2 cut(s)	265, 290
NlaIV	GGNNCC	1 cut(s)	564
NmuCI	GTSAC	2 cut(s)	220, 689
NspI	RCATGY	1 cut(s)	265
PciI	ACATGT	1 cut(s)	261
PciSI	GCTCTTC	1 cut(s)	640
PcsI	WCGNNNNNNNCGW	3 cut(s)	105, 162, 322
PfeI	GAWTC	2 cut(s)	212, 628
PflFI	GACNNNGTC	1 cut(s)	122
PkrI	GCNGC	4 cut(s)	34, 37, 60, 451
Ppu21I	YACGTR	1 cut(s)	326
PscI	ACATGT	1 cut(s)	261
Psp124BI	GAGCTC	1 cut(s)	77
PspEI	GGTNACC	1 cut(s)	526
PspN4I	GGNNCC	1 cut(s)	564
PspPI	GGNCC	2 cut(s)	18, 124
PstNI	CAGNNNCTG	1 cut(s)	355
PsuI	RGATCY	2 cut(s)	373, 664
PsyI	GACNNNGTC	1 cut(s)	122
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
SacI	GAGCTC	1 cut(s)	77
SapI	GCTCTTC	1 cut(s)	640
SaqAI	TTAA	3 cut(s)	92, 246, 266
SatI	GCNGC	4 cut(s)	33, 36, 59, 450
Sau3AI	GATC	6 cut(s)	85, 373, 422, 457, 592, 664
Sau96I	GGNCC	2 cut(s)	18, 124
ScrFI	CCNGG	1 cut(s)	371
SduI	GDGCHC	4 cut(s)	77, 146, 185, 204
SfaNI	GCATC	2 cut(s)	105, 503
SinI	GGWCC	2 cut(s)	18, 124
SnaBI	TACGTA	1 cut(s)	326
Sse9I	AATT	2 cut(s)	484, 510
SsiI	CCGC	3 cut(s)	25, 33, 36
SspMI	CTAG	1 cut(s)	404
SstI	GAGCTC	1 cut(s)	77
StyD4I	CCNGG	1 cut(s)	369
StyI	CCWWGG	1 cut(s)	364
TaaI	ACNGT	4 cut(s)	226, 347, 357, 684
TaiI	ACGT	3 cut(s)	56, 316, 328
TaqI	TCGA	7 cut(s)	99, 108, 165, 192, 421, 631, 677
TasI	AATT	2 cut(s)	484, 510
TatI	WGTACW	1 cut(s)	48
TauI	GCSGC	2 cut(s)	35, 38
TfiI	GAWTC	2 cut(s)	212, 628
Tru1I	TTAA	3 cut(s)	92, 246, 266
Tru9I	TTAA	3 cut(s)	92, 246, 266
TscAI	CASTG	4 cut(s)	285, 360, 538, 687
TseFI	GTSAC	2 cut(s)	220, 689
TseI	GCWGC	2 cut(s)	58, 449
Tsp45I	GTSAC	2 cut(s)	220, 689
TspDTI	ATGAA	2 cut(s)	522, 624
TspGWI	ACGGA	1 cut(s)	585
TspRI	CASTG	4 cut(s)	285, 360, 538, 687
Tth111I	GACNNNGTC	1 cut(s)	122
VpaK11BI	GGWCC	2 cut(s)	18, 124
XagI	CCTNNNNNAGG	1 cut(s)	495
XapI	RAATTY	2 cut(s)	484, 510
XceI	RCATGY	1 cut(s)	265
XspI	CTAG	1 cut(s)	404
ZraI	GACGTC	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.