Rh5CG078100

DEHYDRATION-INDUCED 19-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0012591
Physical Location & Seq
Reverse (-)
5883616 .. 5888171
4556 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG078100.1

Sequence Viewer

Length: 627 bp
ATGGATTCCGAGTTCTGGACCTCCCGCCTTGCCGCCGCGAAACGTCAGTACACGCTGCAGCAGCATCACCAGAGCTCCCACTTGGATCGGCTGAGCATGGATGATTTCGAGGTGGAAGACGAGGTCCGACCGGAATTCCCGTGTCCGTATTGCTACGAGGACTTCGACATCGCGTCGTTGTGTTCGCACCTGGAGGACGAGCACCCGTGCGAATCTAGAGTCACCGTTTGTCCGATCTGCTCAATTAAAGTTACACGGGACATGTTAAGTCATATTACACTGCAACATGGGCACTTGTTCAAGTTGCAGAGACGTCGCAGGTTACGTAGGGTTGCTGTTCCTAATAGTCAAGCACTGTCTCTCCTTGGCCGGGATCTTCGTGAGGCTCATCTCCAGGTGCTTTTAGGGAGTGGGGGATATCGATCAGAGAATGCTAATGTCACTAATGCAGCTACTGATCCATTCCTGTCATCACTTATTTTGAATTTCCCTGCATCAGGAGCAGATGAAATTTCAAAATCTGTGGTAACAACTGCTGAGGACACTCCTGCAAAGAAGGTGGCGCCATCACATATTTGGAAATCAAGGTATTGTTTCGTGTTCATCAGAAACTGTGCTTGCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Di19_C zf-Di19

Protein Analysis

208

Amino Acids

23.66

Weight (kDa)

6.59

Isoelectric Point (pI)

58.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-Di19 PF05605 45 - 97 3.3e-23 Drought induced 19 protein (Di19), zinc-binding
Di19_C PF14571 119 - 196 5e-18 Stress-induced protein Di19, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 316
Acc36I ACCTGC 1 cut(s) 309
AccB1I GGYRCC 1 cut(s) 562
AccII CGCG 2 cut(s) 38, 173
AciI CCGC 3 cut(s) 25, 33, 36
AclWI GGATC 3 cut(s) 93, 381, 452
AcoI YGGCCR 1 cut(s) 367
AcsI RAATTY 3 cut(s) 134, 484, 510
AcyI GRCGYC 2 cut(s) 313, 563
AfaI GTAC 1 cut(s) 50
AfiI CCNNNNNNNGG 3 cut(s) 15, 370, 497
AflIII ACRYGT 1 cut(s) 261
AgsI TTSAA 3 cut(s) 301, 484, 516
AhdI GACNNNNNGTC 1 cut(s) 172
AjnI CCWGG 2 cut(s) 189, 393
AloI GAACNNNNNNTCC 1 cut(s) 28
AluBI AGCT 2 cut(s) 75, 452
AluI AGCT 2 cut(s) 75, 452
Alw21I GWGCWC 2 cut(s) 77, 204
Alw26I GTCTC 2 cut(s) 304, 363
AlwI GGATC 3 cut(s) 93, 381, 452
AlwNI CAGNNNCTG 2 cut(s) 455, 612
AoxI GGCC 1 cut(s) 367
ApeKI GCWGC 4 cut(s) 55, 58, 61, 449
ApoI RAATTY 3 cut(s) 134, 484, 510
ArsI GACNNNNNNTTYG 2 cut(s) 204, 236
AspLEI GCGC 1 cut(s) 565
AspS9I GGNCC 2 cut(s) 18, 124
AsuC2I CCSGG 1 cut(s) 371
AsuHPI GGTGA 2 cut(s) 59, 214
AvaII GGWCC 2 cut(s) 18, 124
BaeGI GKGCMC 1 cut(s) 294
BanI GGYRCC 1 cut(s) 562
BanII GRGCYC 1 cut(s) 77
BbsI GAAGAC 1 cut(s) 123
Bbv12I GWGCWC 2 cut(s) 77, 204
BbvCI CCTCAGC 1 cut(s) 537
BbvI GCAGC 4 cut(s) 42, 70, 73, 461
BccI CCATC 1 cut(s) 574
BcgI CGANNNNNNTGC 2 cut(s) 296, 330
BciT130I CCWGG 2 cut(s) 191, 395
BcnI CCSGG 1 cut(s) 371
BcoDI GTCTC 2 cut(s) 304, 363
BfaI CTAG 1 cut(s) 216
BfmI CTRYAG 1 cut(s) 56
BfoI RGCGCY 1 cut(s) 566
BfuAI ACCTGC 1 cut(s) 309
BisI GCNGC 6 cut(s) 33, 36, 56, 59, 62, 450
BlpI GCTNAGC 1 cut(s) 92
BlsI GCNGC 6 cut(s) 34, 37, 57, 60, 63, 451
Bme1390I CCNGG 3 cut(s) 191, 371, 395
Bme18I GGWCC 2 cut(s) 18, 124
BmeRI GACNNNNNGTC 1 cut(s) 172
BmgT120I GGNCC 2 cut(s) 18, 124
BmiI GGNNCC 1 cut(s) 564
BmrFI CCNGG 3 cut(s) 191, 371, 395
BmsI GCATC 2 cut(s) 73, 503
BpiI GAAGAC 1 cut(s) 123
BpmI CTGGAG 2 cut(s) 212, 377
Bpu10I CCTNAGC 1 cut(s) 537
Bpu1102I GCTNAGC 1 cut(s) 92
BpuMI CCSGG 1 cut(s) 371
Bsa29I ATCGAT 1 cut(s) 421
BsaAI YACGTR 1 cut(s) 326
BsaBI GATNNNNATC 1 cut(s) 421
BsaHI GRCGYC 2 cut(s) 313, 563
BsaJI CCNNGG 1 cut(s) 364
BsaWI WCCGGW 1 cut(s) 130
BsaXI ACNNNNNCTCC 4 cut(s) 59, 89, 345, 375
Bsc4I CCNNNNNNNGG 3 cut(s) 15, 370, 497
Bse8I GATNNNNATC 1 cut(s) 421
BseBI CCWGG 2 cut(s) 191, 395
BseCI ATCGAT 1 cut(s) 421
BseDI CCNNGG 1 cut(s) 364
BseGI GGATG 1 cut(s) 106
BseJI GATNNNNATC 1 cut(s) 421
BseLI CCNNNNNNNGG 3 cut(s) 15, 370, 497
BseMII CTCAG 2 cut(s) 83, 528
BseSI GKGCMC 1 cut(s) 294
BseXI GCAGC 4 cut(s) 42, 70, 73, 461
Bsh1236I CGCG 2 cut(s) 38, 173
Bsh1285I CGRYCG 1 cut(s) 131
BshFI GGCC 1 cut(s) 369
BshNI GGYRCC 1 cut(s) 562
BshVI ATCGAT 1 cut(s) 421
BsiEI CGRYCG 1 cut(s) 131
BsiHKAI GWGCWC 2 cut(s) 77, 204
BsiSI CCGG 2 cut(s) 131, 370
BslFI GGGAC 1 cut(s) 272
BslI CCNNNNNNNGG 3 cut(s) 15, 370, 497
BsmAI GTCTC 2 cut(s) 304, 363
BsmBI CGTCTC 1 cut(s) 304
BsmFI GGGAC 1 cut(s) 272
BsmI GAATGC 1 cut(s) 436
BsnI GGCC 1 cut(s) 369
Bsp1286I GDGCHC 3 cut(s) 77, 204, 294
Bsp143I GATC 5 cut(s) 85, 234, 373, 422, 457
Bsp1720I GCTNAGC 1 cut(s) 92
BspACI CCGC 3 cut(s) 25, 33, 36
BspANI GGCC 1 cut(s) 369
BspCNI CTCAG 2 cut(s) 84, 529
BspDI ATCGAT 1 cut(s) 421
BspFNI CGCG 2 cut(s) 38, 173
BspLI GGNNCC 1 cut(s) 564
BspMAI CTGCAG 1 cut(s) 60
BspMI ACCTGC 1 cut(s) 309
BspPI GGATC 3 cut(s) 93, 381, 452
BspT107I GGYRCC 1 cut(s) 562
BssECI CCNNGG 1 cut(s) 364
BssMI GATC 5 cut(s) 85, 234, 373, 422, 457
BssNI GRCGYC 2 cut(s) 313, 563
BssT1I CCWWGG 1 cut(s) 364
Bst2UI CCWGG 2 cut(s) 191, 395
Bst4CI ACNGT 3 cut(s) 226, 357, 614
BstACI GRCGYC 2 cut(s) 313, 563
BstBAI YACGTR 1 cut(s) 326
BstC8I GCNNGC 1 cut(s) 619
BstDEI CTNAG 2 cut(s) 92, 537
BstENI CCTNNNNNAGG 1 cut(s) 495
BstF5I GGATG 1 cut(s) 106
BstFNI CGCG 2 cut(s) 38, 173
BstH2I RGCGCY 1 cut(s) 566
BstHHI GCGC 1 cut(s) 565
BstKTI GATC 5 cut(s) 88, 237, 376, 425, 460
BstMAI GTCTC 2 cut(s) 304, 363
BstMBI GATC 5 cut(s) 85, 234, 373, 422, 457
BstMCI CGRYCG 1 cut(s) 131
BstMWI GCNNNNNNNGC 3 cut(s) 61, 289, 500
BstNI CCWGG 2 cut(s) 191, 395
BstNSI RCATGY 1 cut(s) 265
BstSCI CCNGG 3 cut(s) 189, 369, 393
BstSFI CTRYAG 1 cut(s) 56
BstSLI GKGCMC 1 cut(s) 294
BstSNI TACGTA 1 cut(s) 326
BstUI CGCG 2 cut(s) 38, 173
BstV1I GCAGC 4 cut(s) 42, 70, 73, 461
BstV2I GAAGAC 1 cut(s) 123
BstX2I RGATCY 1 cut(s) 373
BstYI RGATCY 1 cut(s) 373
Bsu15I ATCGAT 1 cut(s) 421
BsuRI GGCC 1 cut(s) 369
BsuTUI ATCGAT 1 cut(s) 421
BtgZI GCGATG 1 cut(s) 154
BtsCI GGATG 1 cut(s) 106
BtsI GCAGTG 1 cut(s) 278
BtsIMutI CAGTG 2 cut(s) 278, 353
BveI ACCTGC 1 cut(s) 309
Cac8I GCNNGC 1 cut(s) 619
CaiI CAGNNNCTG 2 cut(s) 455, 612
CfoI GCGC 1 cut(s) 565
Cfr13I GGNCC 2 cut(s) 18, 124
ClaI ATCGAT 1 cut(s) 421
CseI GACGC 1 cut(s) 162
Csp6I GTAC 1 cut(s) 49
CspCI CAANNNNNGTGG 4 cut(s) 504, 539, 540, 575
CviAII CATG 3 cut(s) 97, 262, 287
CviJI RGCY 5 cut(s) 75, 91, 369, 386, 452
CviKI_1 RGCY 5 cut(s) 75, 91, 369, 386, 452
CviQI GTAC 1 cut(s) 49
DdeI CTNAG 2 cut(s) 92, 537
DinI GGCGCC 1 cut(s) 564
DpnI GATC 5 cut(s) 87, 236, 375, 424, 459
DpnII GATC 5 cut(s) 85, 234, 373, 422, 457
DriI GACNNNNNGTC 1 cut(s) 172
EaeI YGGCCR 1 cut(s) 367
Eam1105I GACNNNNNGTC 1 cut(s) 172
Ecl136II GAGCTC 1 cut(s) 75
Eco105I TACGTA 1 cut(s) 326
Eco130I CCWWGG 1 cut(s) 364
Eco24I GRGCYC 1 cut(s) 77
Eco32I GATATC 1 cut(s) 419
Eco47I GGWCC 2 cut(s) 18, 124
Eco53kI GAGCTC 1 cut(s) 75
EcoICRI GAGCTC 1 cut(s) 75
EcoNI CCTNNNNNAGG 1 cut(s) 495
EcoRI GAATTC 1 cut(s) 134
EcoRII CCWGG 2 cut(s) 189, 393
EcoRV GATATC 1 cut(s) 419
EcoT14I CCWWGG 1 cut(s) 364
EcoT38I GRGCYC 1 cut(s) 77
EgeI GGCGCC 1 cut(s) 564
EheI GGCGCC 1 cut(s) 564
ErhI CCWWGG 1 cut(s) 364
Esp3I CGTCTC 1 cut(s) 304
FaeI CATG 3 cut(s) 100, 265, 290
FaiI YATR 5 cut(s) 98, 263, 273, 288, 573
FaqI GGGAC 1 cut(s) 272
FatI CATG 3 cut(s) 96, 261, 286
FauI CCCGC 1 cut(s) 32
Fnu4HI GCNGC 6 cut(s) 33, 36, 56, 59, 62, 450
FokI GGATG 1 cut(s) 113
FriOI GRGCYC 1 cut(s) 77
Fsp4HI GCNGC 6 cut(s) 33, 36, 56, 59, 62, 450
FspBI CTAG 1 cut(s) 216
GlaI GCGC 1 cut(s) 564
GluI GCNGC 6 cut(s) 33, 36, 56, 59, 62, 450
GsuI CTGGAG 2 cut(s) 212, 377
HaeII RGCGCY 1 cut(s) 566
HaeIII GGCC 1 cut(s) 369
HapII CCGG 2 cut(s) 131, 370
HgaI GACGC 1 cut(s) 162
HhaI GCGC 1 cut(s) 565
Hin1I GRCGYC 2 cut(s) 313, 563
Hin1II CATG 3 cut(s) 100, 265, 290
Hin6I GCGC 1 cut(s) 563
HinP1I GCGC 1 cut(s) 563
HinfI GANTC 3 cut(s) 5, 212, 219
HpaII CCGG 2 cut(s) 131, 370
HphI GGTGA 2 cut(s) 59, 214
Hpy166II GTNNAC 1 cut(s) 51
Hpy188I TCNGA 5 cut(s) 10, 128, 234, 427, 608
Hpy188III TCNNGA 4 cut(s) 16, 216, 380, 498
Hpy8I GTNNAC 1 cut(s) 51
Hpy99I CGWCG 2 cut(s) 178, 318
HpyAV CCTTC 1 cut(s) 550
HpyCH4III ACNGT 3 cut(s) 226, 357, 614
HpyCH4IV ACGT 3 cut(s) 43, 313, 325
HpyCH4V TGCA 6 cut(s) 58, 283, 307, 449, 494, 551
HpyF10VI GCNNNNNNNGC 3 cut(s) 61, 289, 500
HpyF3I CTNAG 2 cut(s) 92, 537
HpySE526I ACGT 3 cut(s) 43, 313, 325
Hsp92I GRCGYC 2 cut(s) 313, 563
Hsp92II CATG 3 cut(s) 100, 265, 290
HspAI GCGC 1 cut(s) 563
KasI GGCGCC 1 cut(s) 562
Kzo9I GATC 5 cut(s) 85, 234, 373, 422, 457
LmnI GCTCC 2 cut(s) 80, 500
Lsp1109I GCAGC 4 cut(s) 42, 70, 73, 461
LweI GCATC 2 cut(s) 73, 503
MaeI CTAG 1 cut(s) 216
MaeII ACGT 3 cut(s) 43, 313, 325
MaeIII GTNAC 5 cut(s) 220, 250, 321, 439, 526
MalI GATC 5 cut(s) 87, 236, 375, 424, 459
MboI GATC 5 cut(s) 85, 234, 373, 422, 457
MboII GAAGA 2 cut(s) 128, 368
MflI RGATCY 1 cut(s) 373
MhlI GDGCHC 3 cut(s) 77, 204, 294
MluCI AATT 4 cut(s) 134, 243, 484, 510
Mly113I GGCGCC 1 cut(s) 563
MlyI GAGTC 1 cut(s) 228
MmeI TCCRAC 1 cut(s) 151
MnlI CCTC 7 cut(s) 31, 103, 115, 151, 187, 376, 532
MseI TTAA 2 cut(s) 246, 266
MspI CCGG 2 cut(s) 131, 370
MspR9I CCNGG 3 cut(s) 191, 371, 395
Mva1269I GAATGC 1 cut(s) 436
MvaI CCWGG 2 cut(s) 191, 395
MvnI CGCG 2 cut(s) 38, 173
MwoI GCNNNNNNNGC 3 cut(s) 61, 289, 500
NarI GGCGCC 1 cut(s) 563
NciI CCSGG 1 cut(s) 371
NdeII GATC 5 cut(s) 85, 234, 373, 422, 457
NlaIII CATG 3 cut(s) 100, 265, 290
NlaIV GGNNCC 1 cut(s) 564
NmuCI GTSAC 2 cut(s) 220, 439
NspI RCATGY 1 cut(s) 265
PciI ACATGT 1 cut(s) 261
PcsI WCGNNNNNNNCGW 2 cut(s) 162, 322
PctI GAATGC 1 cut(s) 436
PfeI GAWTC 2 cut(s) 5, 212
PflFI GACNNNGTC 1 cut(s) 122
PkrI GCNGC 6 cut(s) 34, 37, 57, 60, 63, 451
PleI GAGTC 1 cut(s) 227
PluTI GGCGCC 1 cut(s) 566
PpsI GAGTC 1 cut(s) 227
Ppu21I YACGTR 1 cut(s) 326
PscI ACATGT 1 cut(s) 261
Psp124BI GAGCTC 1 cut(s) 77
Psp6I CCWGG 2 cut(s) 189, 393
PspGI CCWGG 2 cut(s) 189, 393
PspN4I GGNNCC 1 cut(s) 564
PspPI GGNCC 2 cut(s) 18, 124
PstI CTGCAG 1 cut(s) 60
PstNI CAGNNNCTG 2 cut(s) 455, 612
PsuI RGATCY 1 cut(s) 373
PsyI GACNNNGTC 1 cut(s) 122
RsaI GTAC 1 cut(s) 50
RsaNI GTAC 1 cut(s) 49
SacI GAGCTC 1 cut(s) 77
SaqAI TTAA 2 cut(s) 246, 266
SatI GCNGC 6 cut(s) 33, 36, 56, 59, 62, 450
Sau3AI GATC 5 cut(s) 85, 234, 373, 422, 457
Sau96I GGNCC 2 cut(s) 18, 124
SchI GAGTC 1 cut(s) 228
ScrFI CCNGG 3 cut(s) 191, 371, 395
SduI GDGCHC 3 cut(s) 77, 204, 294
SfaNI GCATC 2 cut(s) 73, 503
SfcI CTRYAG 1 cut(s) 56
SfoI GGCGCC 1 cut(s) 564
SinI GGWCC 2 cut(s) 18, 124
SnaBI TACGTA 1 cut(s) 326
Sse9I AATT 4 cut(s) 134, 243, 484, 510
SsiI CCGC 3 cut(s) 25, 33, 36
SspDI GGCGCC 1 cut(s) 562
SspMI CTAG 1 cut(s) 216
SstI GAGCTC 1 cut(s) 77
StyD4I CCNGG 3 cut(s) 189, 369, 393
StyI CCWWGG 1 cut(s) 364
TaaI ACNGT 3 cut(s) 226, 357, 614
TaiI ACGT 3 cut(s) 46, 316, 328
TaqI TCGA 3 cut(s) 108, 165, 421
TasI AATT 4 cut(s) 134, 243, 484, 510
TatI WGTACW 1 cut(s) 48
TauI GCSGC 2 cut(s) 35, 38
TfiI GAWTC 2 cut(s) 5, 212
Tru1I TTAA 2 cut(s) 246, 266
Tru9I TTAA 2 cut(s) 246, 266
TscAI CASTG 2 cut(s) 285, 360
TseFI GTSAC 2 cut(s) 220, 439
TseI GCWGC 4 cut(s) 55, 58, 61, 449
Tsp45I GTSAC 2 cut(s) 220, 439
TspDTI ATGAA 2 cut(s) 522, 592
TspGWI ACGGA 1 cut(s) 135
TspRI CASTG 2 cut(s) 285, 360
Tth111I GACNNNGTC 1 cut(s) 122
VpaK11BI GGWCC 2 cut(s) 18, 124
XagI CCTNNNNNAGG 1 cut(s) 495
XapI RAATTY 3 cut(s) 134, 484, 510
XbaI TCTAGA 1 cut(s) 215
XceI RCATGY 1 cut(s) 265
XcmI CCANNNNNNNNNTGG 1 cut(s) 573
XspI CTAG 1 cut(s) 216
ZraI GACGTC 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.