FvH4_3g09490

BAG family molecular chaperone regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0012594
Physical Location & Seq
Forward (+)
5526827 .. 5529528
2702 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g09490.t3

Sequence Viewer

Length: 765 bp
ATGATGAAGAGAAGGTCGTTGGCGACTCCGTACGGCAGAGACATGCCGTCTTCTACGACCAAGGACGAGGAAGTCGAGTGGGAAATGAGACCCGGAGGAATGTTGGTCCAGAAAAGAGTCGACAAGTCATCCGACGTCGTTCCGGCTCCCAACTTGCGGCTTCGGATTGCTTTCGGCGCTCTCCGGTACGAGATCTCGGCCAGCTCTCAGTCCACTTTCGGGGAGTTGAAGAAGGTTCTCACGGCGGAGACGGGGTTACAGCCGGGAGACCAGAGGCTAATATTCAGAGGAAAAGAGCGAGAAAACGGGGAGTACTTGGACATGTGCGGAGTCAAAGACCGATCAAAAGTCATGCTAATCGAGGACCCAGGAAGCATAGAGAGGAGAGCCAATCAGATGAGGAGGAACGCGAAGATCCAGACCGCTCATCGCGCCATCTCAGACGTGTGCATGGAGGTCGATAAGCTCGAGGAGCAGGTCACTGCTATTGAAAAATCGATCTCAAATGGAGTCAAGGTAGCAGAAGTTCAGATCACCACACTAATTGAGATGCTTATGAGACTAGCAATCAAGCTGGACAACGTTTCTGCAGAAGGAGACGCTTCTGCTCAAAAGAGTTTGCAGAGCAAGAGGGTGCAGAAATGTGTTGAAACTCTTGATGTGATGAAGATATCAAATGCAGAGGTAAAGCCTGTAGTCGTGACAACCAAGTGGGAAACCTTTGATCCTCCTCCAACTACAGCCAAATGGGAATTTTTCGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BAG ubiquitin

Protein Analysis

255

Amino Acids

28.58

Weight (kDa)

8.34

Isoelectric Point (pI)

46.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ubiquitin PF00240 63 - 120 4.2e-09 Ubiquitin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 71
AatII GACGTC 1 cut(s) 138
Acc36I ACCTGC 1 cut(s) 466
AccBSI CCGCTC 1 cut(s) 425
AccI GTMKAC 1 cut(s) 120
AccII CGCG 2 cut(s) 410, 432
AciI CCGC 4 cut(s) 157, 245, 327, 423
AclI AACGTT 1 cut(s) 582
AclWI GGATC 2 cut(s) 409, 719
AcoI YGGCCR 1 cut(s) 198
AcsI RAATTY 1 cut(s) 752
AcyI GRCGYC 1 cut(s) 135
AfaI GTAC 3 cut(s) 32, 188, 314
AfiI CCNNNNNNNGG 2 cut(s) 156, 219
AflIII ACRYGT 2 cut(s) 321, 444
AgsI TTSAA 3 cut(s) 229, 491, 650
AhdI GACNNNNNGTC 1 cut(s) 46
AjiI CACGTC 1 cut(s) 445
AjnI CCWGG 1 cut(s) 367
AluBI AGCT 3 cut(s) 204, 466, 574
AluI AGCT 3 cut(s) 204, 466, 574
Alw26I GTCTC 6 cut(s) 33, 82, 242, 261, 553, 591
AlwI GGATC 2 cut(s) 409, 719
Ama87I CYCGRG 1 cut(s) 467
AoxI GGCC 1 cut(s) 198
ApoI RAATTY 1 cut(s) 752
AspLEI GCGC 2 cut(s) 179, 434
AspS9I GGNCC 2 cut(s) 106, 364
AsuC2I CCSGG 2 cut(s) 93, 264
AsuHPI GGTGA 1 cut(s) 526
AvaI CYCGRG 1 cut(s) 467
AvaII GGWCC 2 cut(s) 106, 364
BbsI GAAGAC 1 cut(s) 42
BccI CCATC 1 cut(s) 443
BceAI ACGGC 3 cut(s) 31, 49, 258
BcgI CGANNNNNNTGC 2 cut(s) 439, 473
BciT130I CCWGG 1 cut(s) 369
BcnI CCSGG 2 cut(s) 93, 264
BcoDI GTCTC 6 cut(s) 33, 82, 242, 261, 553, 591
BfaI CTAG 1 cut(s) 563
BfmI CTRYAG 3 cut(s) 588, 693, 738
BfoI RGCGCY 1 cut(s) 180
BfuAI ACCTGC 1 cut(s) 466
BglII AGATCT 1 cut(s) 192
BisI GCNGC 1 cut(s) 158
BlsI GCNGC 1 cut(s) 159
BmcAI AGTACT 1 cut(s) 314
Bme1390I CCNGG 3 cut(s) 93, 264, 369
Bme18I GGWCC 2 cut(s) 106, 364
BmeRI GACNNNNNGTC 1 cut(s) 46
BmeT110I CYCGRG 1 cut(s) 467
BmgBI CACGTC 1 cut(s) 445
BmgT120I GGNCC 2 cut(s) 106, 364
BmiI GGNNCC 2 cut(s) 147, 366
BmrFI CCNGG 3 cut(s) 93, 264, 369
BmsI GCATC 1 cut(s) 540
BpiI GAAGAC 1 cut(s) 42
BpuMI CCSGG 2 cut(s) 93, 264
Bsa29I ATCGAT 1 cut(s) 497
BsaHI GRCGYC 1 cut(s) 135
BsaI GGTCTC 2 cut(s) 82, 261
BsaJI CCNNGG 2 cut(s) 60, 367
BsaWI WCCGGW 1 cut(s) 183
BsaXI ACNNNNNCTCC 4 cut(s) 239, 269, 501, 531
Bsc4I CCNNNNNNNGG 2 cut(s) 156, 219
BseBI CCWGG 1 cut(s) 369
BseCI ATCGAT 1 cut(s) 497
BseDI CCNNGG 2 cut(s) 60, 367
BseGI GGATG 1 cut(s) 128
BseLI CCNNNNNNNGG 2 cut(s) 156, 219
BseMII CTCAG 2 cut(s) 221, 453
BseRI GAGGAG 4 cut(s) 397, 415, 485, 720
BsgI GTGCAG 1 cut(s) 656
Bsh1236I CGCG 2 cut(s) 410, 432
BshFI GGCC 1 cut(s) 200
BshVI ATCGAT 1 cut(s) 497
BsiHKCI CYCGRG 1 cut(s) 467
BsiSI CCGG 4 cut(s) 93, 143, 184, 263
BsiWI CGTACG 1 cut(s) 30
BslI CCNNNNNNNGG 2 cut(s) 156, 219
BsmAI GTCTC 6 cut(s) 33, 82, 242, 261, 553, 591
BsmBI CGTCTC 2 cut(s) 242, 591
BsnI GGCC 1 cut(s) 200
Bso31I GGTCTC 2 cut(s) 82, 261
BsoBI CYCGRG 1 cut(s) 467
Bsp143I GATC 6 cut(s) 192, 341, 414, 498, 531, 724
BspACI CCGC 4 cut(s) 157, 245, 327, 423
BspANI GGCC 1 cut(s) 200
BspCNI CTCAG 2 cut(s) 220, 452
BspDI ATCGAT 1 cut(s) 497
BspFNI CGCG 2 cut(s) 410, 432
BspLI GGNNCC 2 cut(s) 147, 366
BspMAI CTGCAG 1 cut(s) 592
BspMI ACCTGC 1 cut(s) 466
BspPI GGATC 2 cut(s) 409, 719
BspTNI GGTCTC 2 cut(s) 82, 261
BsrBI CCGCTC 1 cut(s) 425
BssECI CCNNGG 2 cut(s) 60, 367
BssMI GATC 6 cut(s) 192, 341, 414, 498, 531, 724
BssNI GRCGYC 1 cut(s) 135
BssT1I CCWWGG 1 cut(s) 60
Bst2UI CCWGG 1 cut(s) 369
Bst6I CTCTTC 1 cut(s) 2
BstACI GRCGYC 1 cut(s) 135
BstC8I GCNNGC 1 cut(s) 202
BstDEI CTNAG 2 cut(s) 207, 439
BstF5I GGATG 1 cut(s) 128
BstFNI CGCG 2 cut(s) 410, 432
BstH2I RGCGCY 1 cut(s) 180
BstHHI GCGC 2 cut(s) 179, 434
BstKTI GATC 6 cut(s) 195, 344, 417, 501, 534, 727
BstMAI GTCTC 6 cut(s) 33, 82, 242, 261, 553, 591
BstMBI GATC 6 cut(s) 192, 341, 414, 498, 531, 724
BstMWI GCNNNNNNNGC 3 cut(s) 176, 431, 472
BstNI CCWGG 1 cut(s) 369
BstNSI RCATGY 2 cut(s) 46, 325
BstSCI CCNGG 3 cut(s) 91, 262, 367
BstSFI CTRYAG 3 cut(s) 588, 693, 738
BstUI CGCG 2 cut(s) 410, 432
BstV2I GAAGAC 1 cut(s) 42
BstX2I RGATCY 2 cut(s) 192, 414
BstYI RGATCY 2 cut(s) 192, 414
Bsu15I ATCGAT 1 cut(s) 497
BsuRI GGCC 1 cut(s) 200
BsuTUI ATCGAT 1 cut(s) 497
BtgZI GCGATG 1 cut(s) 413
BtrI CACGTC 1 cut(s) 445
BtsCI GGATG 1 cut(s) 128
BtsI GCAGTG 1 cut(s) 480
BtsIMutI CAGTG 1 cut(s) 480
BveI ACCTGC 1 cut(s) 466
Cac8I GCNNGC 1 cut(s) 202
CfoI GCGC 2 cut(s) 179, 434
Cfr13I GGNCC 2 cut(s) 106, 364
ClaI ATCGAT 1 cut(s) 497
CseI GACGC 1 cut(s) 608
Csp6I GTAC 3 cut(s) 31, 187, 313
CspCI CAANNNNNGTGG 2 cut(s) 526, 561
CviAII CATG 4 cut(s) 43, 322, 352, 451
CviQI GTAC 3 cut(s) 31, 187, 313
DdeI CTNAG 2 cut(s) 207, 439
DpnI GATC 6 cut(s) 194, 343, 416, 500, 533, 726
DpnII GATC 6 cut(s) 192, 341, 414, 498, 531, 724
DrdI GACNNNNNNGTC 1 cut(s) 71
DriI GACNNNNNGTC 1 cut(s) 46
DseDI GACNNNNNNGTC 1 cut(s) 71
EaeI YGGCCR 1 cut(s) 198
Eam1104I CTCTTC 1 cut(s) 2
Eam1105I GACNNNNNGTC 1 cut(s) 46
EarI CTCTTC 1 cut(s) 2
EciI GGCGGA 1 cut(s) 260
Eco130I CCWWGG 1 cut(s) 60
Eco31I GGTCTC 2 cut(s) 82, 261
Eco32I GATATC 1 cut(s) 672
Eco47I GGWCC 2 cut(s) 106, 364
Eco88I CYCGRG 1 cut(s) 467
EcoO109I RGGNCCY 1 cut(s) 364
EcoRII CCWGG 1 cut(s) 367
EcoRV GATATC 1 cut(s) 672
EcoT14I CCWWGG 1 cut(s) 60
ErhI CCWWGG 1 cut(s) 60
Esp3I CGTCTC 2 cut(s) 242, 591
FaeI CATG 4 cut(s) 46, 325, 355, 454
FaiI YATR 6 cut(s) 44, 323, 353, 377, 452, 557
FatI CATG 4 cut(s) 42, 321, 351, 450
FblI GTMKAC 1 cut(s) 120
Fnu4HI GCNGC 1 cut(s) 158
FokI GGATG 1 cut(s) 115
Fsp4HI GCNGC 1 cut(s) 158
FspBI CTAG 1 cut(s) 563
GlaI GCGC 2 cut(s) 178, 433
GluI GCNGC 1 cut(s) 158
HaeII RGCGCY 1 cut(s) 180
HaeIII GGCC 1 cut(s) 200
HapII CCGG 4 cut(s) 93, 143, 184, 263
HgaI GACGC 1 cut(s) 608
HhaI GCGC 2 cut(s) 179, 434
Hin1I GRCGYC 1 cut(s) 135
Hin1II CATG 4 cut(s) 46, 325, 355, 454
Hin6I GCGC 2 cut(s) 177, 432
HinP1I GCGC 2 cut(s) 177, 432
HincII GTYRAC 1 cut(s) 121
HindII GTYRAC 1 cut(s) 121
HinfI GANTC 4 cut(s) 25, 117, 330, 510
HpaII CCGG 4 cut(s) 93, 143, 184, 263
HphI GGTGA 1 cut(s) 526
Hpy166II GTNNAC 2 cut(s) 121, 213
Hpy188I TCNGA 6 cut(s) 133, 165, 287, 396, 442, 531
Hpy188III TCNNGA 4 cut(s) 109, 418, 656, 700
Hpy8I GTNNAC 2 cut(s) 121, 213
Hpy99I CGWCG 2 cut(s) 137, 140
HpyAV CCTTC 3 cut(s) 6, 226, 587
HpyCH4IV ACGT 3 cut(s) 135, 444, 582
HpyCH4V TGCA 5 cut(s) 450, 590, 622, 637, 680
HpyF10VI GCNNNNNNNGC 3 cut(s) 176, 431, 472
HpyF3I CTNAG 2 cut(s) 207, 439
HpySE526I ACGT 3 cut(s) 135, 444, 582
Hsp92I GRCGYC 1 cut(s) 135
Hsp92II CATG 4 cut(s) 46, 325, 355, 454
HspAI GCGC 2 cut(s) 177, 432
Kzo9I GATC 6 cut(s) 192, 341, 414, 498, 531, 724
LmnI GCTCC 2 cut(s) 151, 472
LweI GCATC 1 cut(s) 540
MaeI CTAG 1 cut(s) 563
MaeII ACGT 3 cut(s) 135, 444, 582
MaeIII GTNAC 3 cut(s) 255, 478, 700
MalI GATC 6 cut(s) 194, 343, 416, 500, 533, 726
MbiI CCGCTC 1 cut(s) 425
MboI GATC 6 cut(s) 192, 341, 414, 498, 531, 724
MboII GAAGA 5 cut(s) 19, 42, 241, 424, 679
MflI RGATCY 2 cut(s) 192, 414
MluCI AATT 2 cut(s) 543, 752
MlyI GAGTC 4 cut(s) 19, 126, 339, 519
MmeI TCCRAC 2 cut(s) 156, 758
MseI TTAA 1 cut(s) 763
MspI CCGG 4 cut(s) 93, 143, 184, 263
MspR9I CCNGG 3 cut(s) 93, 264, 369
MvaI CCWGG 1 cut(s) 369
MvnI CGCG 2 cut(s) 410, 432
MwoI GCNNNNNNNGC 3 cut(s) 176, 431, 472
NciI CCSGG 2 cut(s) 93, 264
NdeII GATC 6 cut(s) 192, 341, 414, 498, 531, 724
NlaIII CATG 4 cut(s) 46, 325, 355, 454
NlaIV GGNNCC 2 cut(s) 147, 366
NmeAIII GCCGAG 1 cut(s) 176
NmuCI GTSAC 2 cut(s) 478, 700
NspI RCATGY 2 cut(s) 46, 325
PaeR7I CTCGAG 1 cut(s) 467
PciI ACATGT 1 cut(s) 321
PcsI WCGNNNNNNNCGW 2 cut(s) 72, 465
Pfl23II CGTACG 1 cut(s) 30
PkrI GCNGC 1 cut(s) 159
PleI GAGTC 4 cut(s) 19, 125, 338, 518
PpsI GAGTC 4 cut(s) 19, 125, 338, 518
PpuMI RGGWCCY 1 cut(s) 364
PscI ACATGT 1 cut(s) 321
Psp1406I AACGTT 1 cut(s) 582
Psp5II RGGWCCY 1 cut(s) 364
Psp6I CCWGG 1 cut(s) 367
PspGI CCWGG 1 cut(s) 367
PspLI CGTACG 1 cut(s) 30
PspN4I GGNNCC 2 cut(s) 147, 366
PspPI GGNCC 2 cut(s) 106, 364
PspPPI RGGWCCY 1 cut(s) 364
PspXI VCTCGAGB 1 cut(s) 467
PsrI GAACNNNNNNTAC 2 cut(s) 510, 542
PstI CTGCAG 1 cut(s) 592
PsuI RGATCY 2 cut(s) 192, 414
RsaI GTAC 3 cut(s) 32, 188, 314
RsaNI GTAC 3 cut(s) 31, 187, 313
SalI GTCGAC 1 cut(s) 119
SaqAI TTAA 1 cut(s) 763
SatI GCNGC 1 cut(s) 158
Sau3AI GATC 6 cut(s) 192, 341, 414, 498, 531, 724
Sau96I GGNCC 2 cut(s) 106, 364
ScaI AGTACT 1 cut(s) 314
SchI GAGTC 4 cut(s) 19, 126, 339, 519
ScrFI CCNGG 3 cut(s) 93, 264, 369
SfaNI GCATC 1 cut(s) 540
SfcI CTRYAG 3 cut(s) 588, 693, 738
Sfr274I CTCGAG 1 cut(s) 467
SinI GGWCC 2 cut(s) 106, 364
SlaI CTCGAG 1 cut(s) 467
SmlI CTYRAG 1 cut(s) 467
SmoI CTYRAG 1 cut(s) 467
Sse9I AATT 2 cut(s) 543, 752
SsiI CCGC 4 cut(s) 157, 245, 327, 423
SspI AATATT 1 cut(s) 282
SspMI CTAG 1 cut(s) 563
StyD4I CCNGG 3 cut(s) 91, 262, 367
StyI CCWWGG 1 cut(s) 60
TaiI ACGT 3 cut(s) 138, 447, 585
TaqI TCGA 7 cut(s) 75, 120, 360, 459, 468, 497, 759
TaqII GACCGA 1 cut(s) 354
TasI AATT 2 cut(s) 543, 752
TatI WGTACW 1 cut(s) 312
TauI GCSGC 1 cut(s) 160
Tru1I TTAA 1 cut(s) 763
Tru9I TTAA 1 cut(s) 763
TscAI CASTG 1 cut(s) 487
TseFI GTSAC 2 cut(s) 478, 700
Tsp45I GTSAC 2 cut(s) 478, 700
TspDTI ATGAA 2 cut(s) 20, 680
TspGWI ACGGA 1 cut(s) 18
TspRI CASTG 1 cut(s) 487
VpaK11BI GGWCC 2 cut(s) 106, 364
XapI RAATTY 1 cut(s) 752
XceI RCATGY 2 cut(s) 46, 325
XhoI CTCGAG 1 cut(s) 467
XmiI GTMKAC 1 cut(s) 120
XspI CTAG 1 cut(s) 563
ZraI GACGTC 1 cut(s) 136
ZrmI AGTACT 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.