Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009777.1

Orthogroup ID

OG0012594

Physical Location & Seq

Genomic Coordinates Forward (+)

49266 .. 51786

Gene Structure 2521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009777.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

atgccgtcttctacgaccaaggacgaggaagttgagtgggaaatgagaccgggaggaatgttggtccagaaaagagtcgacaagtcatctgacgttgctccggttccgaacttacggcttcggattgctttcggtgctctccggtacgagatctccgccagctctcaatccacctttggggagttgaagaaggttcttacggcagagacggggttacagcccggagaccagaggctaatattcaggggaaaagagcgagaaaacagggactacttggacatgtgcggagtcaaagaccgatcaaaagtcatgctaatcgaggacccagcgagcatcgagagaagagccaatgacatgcggaggaaagcgaagatccagaccgctcatcgcgccatctcggacgtgtgcttggaggtcgataagctcgcggagcaggtctctgctattgaaaaatctatctcaaatggagtcagggtaccagaagttcagatcaccacactaattgagatgcttatgagacaagcaatcaagctggacaacatttctgcagaaggagatgcttctgctcaaaagagtttgcagggcaagagggtgcagaaatgtgttgaaactcttgatgcgatgaagatatcaaatgcaaaggtaaagcctgtggttgtgacaaccaagtgggaaacctttgatcctcctccgactacagccaaatgggaattctttgattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG ubiquitin

Protein Analysis

240

Amino Acids

26.95

Weight (kDa)

8.68

Isoelectric Point (pI)

45.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012594)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g09490 FvH4_3g09490 FvH4_3g09490
malus_domestica	MD05G1277400.v1.1 MD10G1256300.v1.1
prunus_persica	Prupe.4G087300_v2.0.a1
pyrus_communis	pycom05g25850
rosa_chinensis	RchiOBHm_Chr5g0015071
rosa_laevigata	RLG00000032167
rosa_multiflora	Rmu_co8401769.1_g000001 Rmu_sc0002209.1_g000001 Rmu_sc0009777.1_g000013
rosa_roxburghii	Rroxscaffold_1G00061460
rosa_rugosa	Rorug05G0024100
rosa_samantha	Rh5AG118500 Rh5BG116400 Rh5CG127300 Rh5DG115300
rosa_wichuraiana	Rw5G010240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	424
Acc65I	GGTACC	1 cut(s)	475
AccB1I	GGYRCC	1 cut(s)	475
AccBSI	CCGCTC	1 cut(s)	383
AccI	GTMKAC	1 cut(s)	78
AccII	CGCG	2 cut(s)	390, 428
AciI	CCGC	5 cut(s)	156, 285, 358, 381, 428
AclWI	GGATC	2 cut(s)	367, 677
AcsI	RAATTY	1 cut(s)	710
AfaI	GTAC	2 cut(s)	146, 477
AfiI	CCNNNNNNNGG	1 cut(s)	177
AflIII	ACRYGT	2 cut(s)	279, 402
AgsI	TTSAA	3 cut(s)	187, 449, 608
AjiI	CACGTC	1 cut(s)	403
AjuI	GAANNNNNNNTTGG	1 cut(s)	695
AluBI	AGCT	3 cut(s)	162, 424, 532
AluI	AGCT	3 cut(s)	162, 424, 532
Alw21I	GWGCWC	1 cut(s)	139
Alw26I	GTCTC	5 cut(s)	40, 200, 219, 442, 511
AlwI	GGATC	2 cut(s)	367, 677
ApoI	RAATTY	1 cut(s)	710
Asp718I	GGTACC	1 cut(s)	475
AspLEI	GCGC	1 cut(s)	392
AspS9I	GGNCC	2 cut(s)	64, 322
AsuC2I	CCSGG	2 cut(s)	51, 222
AsuHPI	GGTGA	1 cut(s)	484
AvaII	GGWCC	2 cut(s)	64, 322
BanI	GGYRCC	1 cut(s)	475
Bbv12I	GWGCWC	1 cut(s)	139
BccI	CCATC	1 cut(s)	401
BceAI	ACGGC	2 cut(s)	131, 216
BcnI	CCSGG	2 cut(s)	51, 222
BcoDI	GTCTC	5 cut(s)	40, 200, 219, 442, 511
BfmI	CTRYAG	2 cut(s)	546, 696
BfuAI	ACCTGC	1 cut(s)	424
BglII	AGATCT	1 cut(s)	150
Bme1390I	CCNGG	2 cut(s)	51, 222
Bme18I	GGWCC	2 cut(s)	64, 322
BmgBI	CACGTC	1 cut(s)	403
BmgT120I	GGNCC	2 cut(s)	64, 322
BmiI	GGNNCC	3 cut(s)	105, 324, 477
BmrFI	CCNGG	2 cut(s)	51, 222
BmsI	GCATC	4 cut(s)	342, 498, 547, 607
BplI	GAGNNNNNCTC	2 cut(s)	422, 454
BpuMI	CCSGG	2 cut(s)	51, 222
BsaI	GGTCTC	3 cut(s)	40, 219, 442
BsaJI	CCNNGG	1 cut(s)	18
BsaWI	WCCGGW	2 cut(s)	100, 141
BsaXI	ACNNNNNCTCC	4 cut(s)	137, 167, 459, 489
Bsc4I	CCNNNNNNNGG	1 cut(s)	177
BseDI	CCNNGG	1 cut(s)	18
BseLI	CCNNNNNNNGG	1 cut(s)	177
BseRI	GAGGAG	1 cut(s)	678
BseYI	CCCAGC	1 cut(s)	325
BsgI	GTGCAG	1 cut(s)	614
Bsh1236I	CGCG	2 cut(s)	390, 428
BshNI	GGYRCC	1 cut(s)	475
BsiHKAI	GWGCWC	1 cut(s)	139
BsiSI	CCGG	4 cut(s)	50, 101, 142, 222
BslFI	GGGAC	1 cut(s)	281
BslI	CCNNNNNNNGG	1 cut(s)	177
BsmAI	GTCTC	5 cut(s)	40, 200, 219, 442, 511
BsmBI	CGTCTC	1 cut(s)	200
BsmFI	GGGAC	1 cut(s)	281
Bso31I	GGTCTC	3 cut(s)	40, 219, 442
Bsp1286I	GDGCHC	1 cut(s)	139
Bsp143I	GATC	5 cut(s)	150, 299, 372, 489, 682
BspACI	CCGC	5 cut(s)	156, 285, 358, 381, 428
BspFNI	CGCG	2 cut(s)	390, 428
BspLI	GGNNCC	3 cut(s)	105, 324, 477
BspMAI	CTGCAG	1 cut(s)	550
BspMI	ACCTGC	1 cut(s)	424
BspPI	GGATC	2 cut(s)	367, 677
BspQI	GCTCTTC	1 cut(s)	337
BspT107I	GGYRCC	1 cut(s)	475
BspTNI	GGTCTC	3 cut(s)	40, 219, 442
BsrBI	CCGCTC	1 cut(s)	383
BssECI	CCNNGG	1 cut(s)	18
BssMI	GATC	5 cut(s)	150, 299, 372, 489, 682
BssT1I	CCWWGG	1 cut(s)	18
Bst6I	CTCTTC	1 cut(s)	337
BstC8I	GCNNGC	3 cut(s)	160, 331, 426
BstFNI	CGCG	2 cut(s)	390, 428
BstHHI	GCGC	1 cut(s)	392
BstKTI	GATC	5 cut(s)	153, 302, 375, 492, 685
BstMAI	GTCTC	5 cut(s)	40, 200, 219, 442, 511
BstMBI	GATC	5 cut(s)	150, 299, 372, 489, 682
BstMWI	GCNNNNNNNGC	3 cut(s)	134, 389, 430
BstNSI	RCATGY	2 cut(s)	283, 358
BstSCI	CCNGG	2 cut(s)	49, 220
BstSFI	CTRYAG	2 cut(s)	546, 696
BstUI	CGCG	2 cut(s)	390, 428
BstX2I	RGATCY	2 cut(s)	150, 372
BstYI	RGATCY	2 cut(s)	150, 372
BtgZI	GCGATG	2 cut(s)	371, 635
BtrI	CACGTC	1 cut(s)	403
BveI	ACCTGC	1 cut(s)	424
Cac8I	GCNNGC	3 cut(s)	160, 331, 426
CfoI	GCGC	1 cut(s)	392
Cfr13I	GGNCC	2 cut(s)	64, 322
Csp6I	GTAC	2 cut(s)	145, 476
CspCI	CAANNNNNGTGG	2 cut(s)	484, 519
CviAII	CATG	3 cut(s)	280, 310, 355
CviJI	RGCY	9 cut(s)	118, 162, 220, 235, 347, 424, 532, 649, 701
CviKI_1	RGCY	9 cut(s)	118, 162, 220, 235, 347, 424, 532, 649, 701
CviQI	GTAC	2 cut(s)	145, 476
DpnI	GATC	5 cut(s)	152, 301, 374, 491, 684
DpnII	GATC	5 cut(s)	150, 299, 372, 489, 682
Eam1104I	CTCTTC	1 cut(s)	337
EarI	CTCTTC	1 cut(s)	337
EciI	GGCGGA	1 cut(s)	145
Eco130I	CCWWGG	1 cut(s)	18
Eco31I	GGTCTC	3 cut(s)	40, 219, 442
Eco32I	GATATC	1 cut(s)	630
Eco47I	GGWCC	2 cut(s)	64, 322
EcoO109I	RGGNCCY	1 cut(s)	322
EcoRI	GAATTC	1 cut(s)	710
EcoRV	GATATC	1 cut(s)	630
EcoT14I	CCWWGG	1 cut(s)	18
ErhI	CCWWGG	1 cut(s)	18
Esp3I	CGTCTC	1 cut(s)	200
FaeI	CATG	3 cut(s)	283, 313, 358
FaiI	YATR	4 cut(s)	281, 311, 356, 515
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	3 cut(s)	279, 309, 354
FblI	GTMKAC	1 cut(s)	78
GlaI	GCGC	1 cut(s)	391
GsaI	CCCAGC	1 cut(s)	329
HapII	CCGG	4 cut(s)	50, 101, 142, 222
HhaI	GCGC	1 cut(s)	392
Hin1II	CATG	3 cut(s)	283, 313, 358
Hin6I	GCGC	1 cut(s)	390
HinP1I	GCGC	1 cut(s)	390
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
HinfI	GANTC	3 cut(s)	75, 288, 468
HpaII	CCGG	4 cut(s)	50, 101, 142, 222
HphI	GGTGA	1 cut(s)	484
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	6 cut(s)	91, 108, 123, 400, 489, 693
Hpy188III	TCNNGA	4 cut(s)	67, 337, 376, 614
Hpy8I	GTNNAC	1 cut(s)	79
HpyAV	CCTTC	2 cut(s)	184, 545
HpyCH4IV	ACGT	2 cut(s)	93, 402
HpyCH4V	TGCA	4 cut(s)	548, 580, 595, 638
HpyF10VI	GCNNNNNNNGC	3 cut(s)	134, 389, 430
HpySE526I	ACGT	2 cut(s)	93, 402
Hsp92II	CATG	3 cut(s)	283, 313, 358
HspAI	GCGC	1 cut(s)	390
KpnI	GGTACC	1 cut(s)	479
Kzo9I	GATC	5 cut(s)	150, 299, 372, 489, 682
LguI	GCTCTTC	1 cut(s)	337
LmnI	GCTCC	2 cut(s)	103, 430
LweI	GCATC	4 cut(s)	342, 498, 547, 607
MaeII	ACGT	2 cut(s)	93, 402
MaeIII	GTNAC	2 cut(s)	213, 658
MalI	GATC	5 cut(s)	152, 301, 374, 491, 684
MbiI	CCGCTC	1 cut(s)	383
MboI	GATC	5 cut(s)	150, 299, 372, 489, 682
MboII	GAAGA	4 cut(s)	199, 354, 382, 637
MflI	RGATCY	2 cut(s)	150, 372
MhlI	GDGCHC	1 cut(s)	139
MluCI	AATT	2 cut(s)	501, 710
MlyI	GAGTC	3 cut(s)	84, 297, 477
MmeI	TCCRAC	1 cut(s)	716
MnlI	CCTC	9 cut(s)	19, 47, 225, 313, 354, 406, 582, 696, 699
MseI	TTAA	1 cut(s)	721
MspI	CCGG	4 cut(s)	50, 101, 142, 222
MspR9I	CCNGG	2 cut(s)	51, 222
MvnI	CGCG	2 cut(s)	390, 428
MwoI	GCNNNNNNNGC	3 cut(s)	134, 389, 430
NciI	CCSGG	2 cut(s)	51, 222
NdeII	GATC	5 cut(s)	150, 299, 372, 489, 682
NlaIII	CATG	3 cut(s)	283, 313, 358
NlaIV	GGNNCC	3 cut(s)	105, 324, 477
NmuCI	GTSAC	1 cut(s)	658
NspI	RCATGY	2 cut(s)	283, 358
PciI	ACATGT	1 cut(s)	279
PciSI	GCTCTTC	1 cut(s)	337
PleI	GAGTC	3 cut(s)	83, 296, 476
PpsI	GAGTC	3 cut(s)	83, 296, 476
PpuMI	RGGWCCY	1 cut(s)	322
PscI	ACATGT	1 cut(s)	279
Psp5II	RGGWCCY	1 cut(s)	322
PspFI	CCCAGC	1 cut(s)	325
PspN4I	GGNNCC	3 cut(s)	105, 324, 477
PspPI	GGNCC	2 cut(s)	64, 322
PspPPI	RGGWCCY	1 cut(s)	322
PsrI	GAACNNNNNNTAC	2 cut(s)	468, 500
PstI	CTGCAG	1 cut(s)	550
PsuI	RGATCY	2 cut(s)	150, 372
RsaI	GTAC	2 cut(s)	146, 477
RsaNI	GTAC	2 cut(s)	145, 476
SalI	GTCGAC	1 cut(s)	77
SapI	GCTCTTC	1 cut(s)	337
SaqAI	TTAA	1 cut(s)	721
Sau3AI	GATC	5 cut(s)	150, 299, 372, 489, 682
Sau96I	GGNCC	2 cut(s)	64, 322
SchI	GAGTC	3 cut(s)	84, 297, 477
ScrFI	CCNGG	2 cut(s)	51, 222
SduI	GDGCHC	1 cut(s)	139
SfaNI	GCATC	4 cut(s)	342, 498, 547, 607
SfcI	CTRYAG	2 cut(s)	546, 696
SinI	GGWCC	2 cut(s)	64, 322
Sse9I	AATT	2 cut(s)	501, 710
SsiI	CCGC	5 cut(s)	156, 285, 358, 381, 428
SspI	AATATT	1 cut(s)	240
StyD4I	CCNGG	2 cut(s)	49, 220
StyI	CCWWGG	1 cut(s)	18
TaiI	ACGT	2 cut(s)	96, 405
TaqI	TCGA	4 cut(s)	78, 318, 336, 417
TaqII	GACCGA	1 cut(s)	312
TasI	AATT	2 cut(s)	501, 710
Tru1I	TTAA	1 cut(s)	721
Tru9I	TTAA	1 cut(s)	721
TseFI	GTSAC	1 cut(s)	658
Tsp45I	GTSAC	1 cut(s)	658
TspDTI	ATGAA	1 cut(s)	638
VpaK11BI	GGWCC	2 cut(s)	64, 322
XapI	RAATTY	1 cut(s)	710
XceI	RCATGY	2 cut(s)	283, 358
XmiI	GTMKAC	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.