Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0012594

Physical Location & Seq

Genomic Coordinates Reverse (-)

27160039 .. 27163273

Gene Structure 3235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g25850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGATGAAGCGGAGGTCCAATGCAAACGGCAGAGCGCGGGATAGCGCCAACAATACGACGCCGTCCTCGACGTCGGTCGACGAGGAAGTTGCGTGGGAAATGAGGCCCGGAGGAATGCTGGTGCAGAAGAGGGGTGAGAAATCGGACGCTCCGGCTCCGAATTTGCGGCTTCGGATTGCTTTCGGTGCTCTCCGTTACGAGATCTCGGCCAGTGCTCAGTCCACATTCGGGGAGTTGAAGAAGGTTCTTACGGCAGAGACGGGGTTACAGCCTGGCGAGCAGAGGCTGCTATTCAGAGGAAAAGAGCGAGAAAACGGCGAGTACTTGGACATGTGCGGAGTCAAAGACCGGTCAAAAGTCGTACTGGTGGAGGACCCAGCGAGCATCGAGAGGAGGGCCGTTGAGATGCGTAGGAATGCCAAGATCCAGGCCGCACATCGCGCCATACTGGACGTGTCCAGGGAGGTTGACAAGCTTGCGGAGCAGGTCTCTGCAATTGAAAAATCCATCTCAAATGGAGTCAAAGTACCAGAACTTCAGATAACTACACTAATTGAGATGCTCATGAGACTAGCAATCAAGCTGGACAACATTTCTGCAGAAGGAGATGCTTCTGCTCAGAAGAATCTGCAGGGCAAGAGGGTGCAGAAATGTGTTGAAGGTCTGGATGTACTGAAGATATCAAATGCAAAGGTGAAGCCTGTTGTGGTGACAACCAAATGGGAGCCTGTTGTGACAACCAAGTGGGAGACTTTTGACCCTCCTGCAACCACAGCTCAATGGGAGTTCTTCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG ubiquitin

Protein Analysis

266

Amino Acids

29.47

Weight (kDa)

9.14

Isoelectric Point (pI)

43.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	66 - 123	1.5e-08	Ubiquitin family
BAG	PF02179	149 - 224	3.4e-12	BAG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012594)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g09490 FvH4_3g09490 FvH4_3g09490
malus_domestica	MD05G1277400.v1.1 MD10G1256300.v1.1
prunus_persica	Prupe.4G087300_v2.0.a1
pyrus_communis	pycom05g25850
rosa_chinensis	RchiOBHm_Chr5g0015071
rosa_laevigata	RLG00000032167
rosa_multiflora	Rmu_co8401769.1_g000001 Rmu_sc0002209.1_g000001 Rmu_sc0009777.1_g000013
rosa_roxburghii	Rroxscaffold_1G00061460
rosa_rugosa	Rorug05G0024100
rosa_samantha	Rh5AG118500 Rh5BG116400 Rh5CG127300 Rh5DG115300
rosa_wichuraiana	Rw5G010240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	74
Acc36I	ACCTGC	1 cut(s)	475
AccI	GTMKAC	1 cut(s)	78
AccII	CGCG	2 cut(s)	37, 441
AciI	CCGC	6 cut(s)	10, 37, 166, 336, 432, 479
AclWI	GGATC	1 cut(s)	418
AcoI	YGGCCR	1 cut(s)	207
AcsI	RAATTY	1 cut(s)	160
AcuI	CTGAAG	2 cut(s)	521, 695
AcyI	GRCGYC	2 cut(s)	59, 71
AfaI	GTAC	4 cut(s)	323, 363, 528, 672
AfiI	CCNNNNNNNGG	1 cut(s)	228
AflIII	ACRYGT	2 cut(s)	330, 453
AgeI	ACCGGT	1 cut(s)	348
AgsI	TTSAA	3 cut(s)	238, 500, 659
AjiI	CACGTC	1 cut(s)	454
AjnI	CCWGG	3 cut(s)	271, 426, 458
AluBI	AGCT	3 cut(s)	475, 583, 776
AluI	AGCT	3 cut(s)	475, 583, 776
Alw21I	GWGCWC	2 cut(s)	190, 217
Alw26I	GTCTC	4 cut(s)	251, 493, 562, 743
AlwI	GGATC	1 cut(s)	418
AlwNI	CAGNNNCTG	1 cut(s)	286
AoxI	GGCC	4 cut(s)	104, 207, 396, 429
ApeKI	GCWGC	1 cut(s)	286
ApoI	RAATTY	1 cut(s)	160
AsiGI	ACCGGT	1 cut(s)	348
AspLEI	GCGC	3 cut(s)	37, 47, 443
AspS9I	GGNCC	4 cut(s)	15, 105, 373, 396
AsuC2I	CCSGG	1 cut(s)	108
AsuHPI	GGTGA	3 cut(s)	146, 706, 721
AvaII	GGWCC	2 cut(s)	15, 373
BarI	GAAGNNNNNNTAC	2 cut(s)	519, 551
Bbv12I	GWGCWC	2 cut(s)	190, 217
BbvI	GCAGC	1 cut(s)	273
BccI	CCATC	1 cut(s)	515
BceAI	ACGGC	5 cut(s)	43, 46, 267, 331, 383
BcgI	CGANNNNNNTGC	2 cut(s)	71, 105
BciT130I	CCWGG	3 cut(s)	273, 428, 460
BcnI	CCSGG	1 cut(s)	108
BcoDI	GTCTC	4 cut(s)	251, 493, 562, 743
BfaI	CTAG	1 cut(s)	572
BfmI	CTRYAG	2 cut(s)	597, 629
BfoI	RGCGCY	1 cut(s)	48
BfuAI	ACCTGC	1 cut(s)	475
BglII	AGATCT	1 cut(s)	201
BisI	GCNGC	3 cut(s)	167, 287, 432
BlsI	GCNGC	3 cut(s)	168, 288, 433
BmcAI	AGTACT	1 cut(s)	323
Bme1390I	CCNGG	4 cut(s)	108, 273, 428, 460
Bme18I	GGWCC	2 cut(s)	15, 373
BmgBI	CACGTC	1 cut(s)	454
BmgT120I	GGNCC	4 cut(s)	15, 105, 373, 396
BmiI	GGNNCC	3 cut(s)	156, 375, 726
BmrFI	CCNGG	4 cut(s)	108, 273, 428, 460
BmsI	GCATC	4 cut(s)	393, 396, 549, 598
BoxI	GACNNNNGTC	1 cut(s)	74
BplI	GAGNNNNNCTC	2 cut(s)	473, 505
BpuMI	CCSGG	1 cut(s)	108
BsaHI	GRCGYC	2 cut(s)	59, 71
BsaI	GGTCTC	1 cut(s)	493
BsaJI	CCNNGG	1 cut(s)	459
BsaWI	WCCGGW	1 cut(s)	348
BsaXI	ACNNNNNCTCC	2 cut(s)	510, 540
Bsc4I	CCNNNNNNNGG	1 cut(s)	228
Bse118I	RCCGGY	1 cut(s)	348
Bse1I	ACTGG	3 cut(s)	210, 369, 453
BseBI	CCWGG	3 cut(s)	273, 428, 460
BseDI	CCNNGG	1 cut(s)	459
BseGI	GGATG	1 cut(s)	673
BseLI	CCNNNNNNNGG	1 cut(s)	228
BseMII	CTCAG	2 cut(s)	230, 632
BseNI	ACTGG	3 cut(s)	210, 369, 453
BseRI	GAGGAG	1 cut(s)	406
BseXI	GCAGC	1 cut(s)	273
BseYI	CCCAGC	1 cut(s)	376
BsgI	GTGCAG	2 cut(s)	143, 665
Bsh1236I	CGCG	2 cut(s)	37, 441
Bsh1285I	CGRYCG	1 cut(s)	78
BshFI	GGCC	4 cut(s)	106, 209, 398, 431
BshTI	ACCGGT	1 cut(s)	348
BsiEI	CGRYCG	1 cut(s)	78
BsiHKAI	GWGCWC	2 cut(s)	190, 217
BsiSI	CCGG	3 cut(s)	108, 152, 349
BslI	CCNNNNNNNGG	1 cut(s)	228
BsmAI	GTCTC	4 cut(s)	251, 493, 562, 743
BsmBI	CGTCTC	1 cut(s)	251
BsmI	GAATGC	2 cut(s)	120, 421
BsnI	GGCC	4 cut(s)	106, 209, 398, 431
Bso31I	GGTCTC	1 cut(s)	493
Bsp1286I	GDGCHC	2 cut(s)	190, 217
Bsp143I	GATC	2 cut(s)	201, 423
BspACI	CCGC	6 cut(s)	10, 37, 166, 336, 432, 479
BspANI	GGCC	4 cut(s)	106, 209, 398, 431
BspCNI	CTCAG	2 cut(s)	229, 631
BspFNI	CGCG	2 cut(s)	37, 441
BspHI	TCATGA	1 cut(s)	564
BspLI	GGNNCC	3 cut(s)	156, 375, 726
BspMAI	CTGCAG	2 cut(s)	601, 633
BspMI	ACCTGC	1 cut(s)	475
BspPI	GGATC	1 cut(s)	418
BspTNI	GGTCTC	1 cut(s)	493
BsrFI	RCCGGY	1 cut(s)	348
BsrI	ACTGG	3 cut(s)	210, 369, 453
BssAI	RCCGGY	1 cut(s)	348
BssECI	CCNNGG	1 cut(s)	459
BssMI	GATC	2 cut(s)	201, 423
BssNI	GRCGYC	2 cut(s)	59, 71
Bst2UI	CCWGG	3 cut(s)	273, 428, 460
Bst6I	CTCTTC	1 cut(s)	122
BstACI	GRCGYC	2 cut(s)	59, 71
BstAPI	GCANNNNNTGC	1 cut(s)	286
BstC8I	GCNNGC	3 cut(s)	278, 382, 477
BstDEI	CTNAG	2 cut(s)	216, 618
BstF5I	GGATG	1 cut(s)	673
BstFNI	CGCG	2 cut(s)	37, 441
BstH2I	RGCGCY	1 cut(s)	48
BstHHI	GCGC	3 cut(s)	37, 47, 443
BstKTI	GATC	2 cut(s)	204, 426
BstMAI	GTCTC	4 cut(s)	251, 493, 562, 743
BstMBI	GATC	2 cut(s)	201, 423
BstMCI	CGRYCG	1 cut(s)	78
BstMWI	GCNNNNNNNGC	6 cut(s)	185, 277, 286, 440, 481, 773
BstNI	CCWGG	3 cut(s)	273, 428, 460
BstNSI	RCATGY	1 cut(s)	334
BstPAI	GACNNNNGTC	1 cut(s)	74
BstSCI	CCNGG	4 cut(s)	106, 271, 426, 458
BstSFI	CTRYAG	2 cut(s)	597, 629
BstUI	CGCG	2 cut(s)	37, 441
BstV1I	GCAGC	1 cut(s)	273
BstX2I	RGATCY	2 cut(s)	201, 423
BstYI	RGATCY	2 cut(s)	201, 423
BsuRI	GGCC	4 cut(s)	106, 209, 398, 431
BtgZI	GCGATG	1 cut(s)	422
BtrI	CACGTC	1 cut(s)	454
BtsCI	GGATG	1 cut(s)	673
BtsIMutI	CAGTG	1 cut(s)	217
BveI	ACCTGC	1 cut(s)	475
Cac8I	GCNNGC	3 cut(s)	278, 382, 477
CaiI	CAGNNNCTG	1 cut(s)	286
CciI	TCATGA	1 cut(s)	564
CfoI	GCGC	3 cut(s)	37, 47, 443
Cfr10I	RCCGGY	1 cut(s)	348
Cfr13I	GGNCC	4 cut(s)	15, 105, 373, 396
CseI	GACGC	2 cut(s)	67, 155
Csp6I	GTAC	4 cut(s)	322, 362, 527, 671
CspAI	ACCGGT	1 cut(s)	348
CviAII	CATG	2 cut(s)	331, 565
CviQI	GTAC	4 cut(s)	322, 362, 527, 671
DdeI	CTNAG	2 cut(s)	216, 618
DpnI	GATC	2 cut(s)	203, 425
DpnII	GATC	2 cut(s)	201, 423
EaeI	YGGCCR	1 cut(s)	207
Eam1104I	CTCTTC	1 cut(s)	122
EarI	CTCTTC	1 cut(s)	122
Eco31I	GGTCTC	1 cut(s)	493
Eco32I	GATATC	1 cut(s)	681
Eco47I	GGWCC	2 cut(s)	15, 373
Eco57I	CTGAAG	2 cut(s)	521, 695
EcoO109I	RGGNCCY	1 cut(s)	373
EcoRII	CCWGG	3 cut(s)	271, 426, 458
EcoRV	GATATC	1 cut(s)	681
Esp3I	CGTCTC	1 cut(s)	251
FaeI	CATG	2 cut(s)	334, 568
FaiI	YATR	3 cut(s)	332, 446, 566
FatI	CATG	2 cut(s)	330, 564
FauI	CCCGC	1 cut(s)	30
FblI	GTMKAC	1 cut(s)	78
Fnu4HI	GCNGC	3 cut(s)	167, 287, 432
FokI	GGATG	1 cut(s)	680
Fsp4HI	GCNGC	3 cut(s)	167, 287, 432
FspBI	CTAG	1 cut(s)	572
GlaI	GCGC	3 cut(s)	36, 46, 442
GluI	GCNGC	3 cut(s)	167, 287, 432
GsaI	CCCAGC	1 cut(s)	380
HaeII	RGCGCY	1 cut(s)	48
HaeIII	GGCC	4 cut(s)	106, 209, 398, 431
HapII	CCGG	3 cut(s)	108, 152, 349
HgaI	GACGC	2 cut(s)	67, 155
HhaI	GCGC	3 cut(s)	37, 47, 443
Hin1I	GRCGYC	2 cut(s)	59, 71
Hin1II	CATG	2 cut(s)	334, 568
Hin6I	GCGC	3 cut(s)	35, 45, 441
HinP1I	GCGC	3 cut(s)	35, 45, 441
HincII	GTYRAC	2 cut(s)	79, 469
HindII	GTYRAC	2 cut(s)	79, 469
HindIII	AAGCTT	1 cut(s)	473
HinfI	GANTC	3 cut(s)	339, 519, 625
HpaII	CCGG	3 cut(s)	108, 152, 349
HphI	GGTGA	3 cut(s)	146, 706, 721
Hpy166II	GTNNAC	3 cut(s)	79, 222, 469
Hpy188I	TCNGA	6 cut(s)	145, 159, 174, 296, 540, 621
Hpy188III	TCNNGA	3 cut(s)	388, 565, 665
Hpy8I	GTNNAC	3 cut(s)	79, 222, 469
Hpy99I	CGWCG	4 cut(s)	61, 73, 76, 83
HpyAV	CCTTC	3 cut(s)	235, 596, 653
HpyCH4IV	ACGT	2 cut(s)	71, 453
HpyCH4V	TGCA	8 cut(s)	23, 124, 494, 599, 631, 646, 689, 767
HpyF10VI	GCNNNNNNNGC	6 cut(s)	185, 277, 286, 440, 481, 773
HpyF3I	CTNAG	2 cut(s)	216, 618
HpySE526I	ACGT	2 cut(s)	71, 453
Hsp92I	GRCGYC	2 cut(s)	59, 71
Hsp92II	CATG	2 cut(s)	334, 568
HspAI	GCGC	3 cut(s)	35, 45, 441
Kzo9I	GATC	2 cut(s)	201, 423
LmnI	GCTCC	4 cut(s)	154, 160, 481, 724
Lsp1109I	GCAGC	1 cut(s)	273
LweI	GCATC	4 cut(s)	393, 396, 549, 598
MaeI	CTAG	1 cut(s)	572
MaeII	ACGT	2 cut(s)	71, 453
MaeIII	GTNAC	4 cut(s)	194, 264, 709, 733
MalI	GATC	2 cut(s)	203, 425
MboI	GATC	2 cut(s)	201, 423
MboII	GAAGA	5 cut(s)	139, 250, 634, 688, 781
MfeI	CAATTG	1 cut(s)	495
MflI	RGATCY	2 cut(s)	201, 423
MhlI	GDGCHC	2 cut(s)	190, 217
MluCI	AATT	3 cut(s)	160, 495, 552
MlyI	GAGTC	2 cut(s)	348, 528
MspI	CCGG	3 cut(s)	108, 152, 349
MspR9I	CCNGG	4 cut(s)	108, 273, 428, 460
MunI	CAATTG	1 cut(s)	495
Mva1269I	GAATGC	2 cut(s)	120, 421
MvaI	CCWGG	3 cut(s)	273, 428, 460
MvnI	CGCG	2 cut(s)	37, 441
MwoI	GCNNNNNNNGC	6 cut(s)	185, 277, 286, 440, 481, 773
NciI	CCSGG	1 cut(s)	108
NdeII	GATC	2 cut(s)	201, 423
NlaIII	CATG	2 cut(s)	334, 568
NlaIV	GGNNCC	3 cut(s)	156, 375, 726
NmeAIII	GCCGAG	1 cut(s)	185
NmuCI	GTSAC	2 cut(s)	709, 733
NspI	RCATGY	1 cut(s)	334
PagI	TCATGA	1 cut(s)	564
PciI	ACATGT	1 cut(s)	330
PcsI	WCGNNNNNNNCGW	1 cut(s)	65
PctI	GAATGC	2 cut(s)	120, 421
PfeI	GAWTC	1 cut(s)	625
PflFI	GACNNNGTC	1 cut(s)	61
PinAI	ACCGGT	1 cut(s)	348
PkrI	GCNGC	3 cut(s)	168, 288, 433
PleI	GAGTC	2 cut(s)	347, 527
PpsI	GAGTC	2 cut(s)	347, 527
PpuMI	RGGWCCY	1 cut(s)	373
PscI	ACATGT	1 cut(s)	330
PshAI	GACNNNNGTC	1 cut(s)	74
Psp5II	RGGWCCY	1 cut(s)	373
Psp6I	CCWGG	3 cut(s)	271, 426, 458
PspFI	CCCAGC	1 cut(s)	376
PspGI	CCWGG	3 cut(s)	271, 426, 458
PspN4I	GGNNCC	3 cut(s)	156, 375, 726
PspPI	GGNCC	4 cut(s)	15, 105, 373, 396
PspPPI	RGGWCCY	1 cut(s)	373
PstI	CTGCAG	2 cut(s)	601, 633
PstNI	CAGNNNCTG	1 cut(s)	286
PsuI	RGATCY	2 cut(s)	201, 423
PsyI	GACNNNGTC	1 cut(s)	61
RsaI	GTAC	4 cut(s)	323, 363, 528, 672
RsaNI	GTAC	4 cut(s)	322, 362, 527, 671
SalI	GTCGAC	1 cut(s)	77
SatI	GCNGC	3 cut(s)	167, 287, 432
Sau3AI	GATC	2 cut(s)	201, 423
Sau96I	GGNCC	4 cut(s)	15, 105, 373, 396
ScaI	AGTACT	1 cut(s)	323
SchI	GAGTC	2 cut(s)	348, 528
ScrFI	CCNGG	4 cut(s)	108, 273, 428, 460
SduI	GDGCHC	2 cut(s)	190, 217
SfaNI	GCATC	4 cut(s)	393, 396, 549, 598
SfcI	CTRYAG	2 cut(s)	597, 629
SinI	GGWCC	2 cut(s)	15, 373
Sse9I	AATT	3 cut(s)	160, 495, 552
SsiI	CCGC	6 cut(s)	10, 37, 166, 336, 432, 479
SspMI	CTAG	1 cut(s)	572
StyD4I	CCNGG	4 cut(s)	106, 271, 426, 458
TaiI	ACGT	2 cut(s)	74, 456
TaqI	TCGA	4 cut(s)	68, 78, 387, 792
TaqII	GACCGA	1 cut(s)	64
TasI	AATT	3 cut(s)	160, 495, 552
TatI	WGTACW	2 cut(s)	321, 670
TauI	GCSGC	2 cut(s)	169, 434
TfiI	GAWTC	1 cut(s)	625
TscAI	CASTG	1 cut(s)	217
TseFI	GTSAC	2 cut(s)	709, 733
TseI	GCWGC	1 cut(s)	286
Tsp45I	GTSAC	2 cut(s)	709, 733
TspDTI	ATGAA	1 cut(s)	20
TspGWI	ACGGA	1 cut(s)	182
TspRI	CASTG	1 cut(s)	217
Tth111I	GACNNNGTC	1 cut(s)	61
VpaK11BI	GGWCC	2 cut(s)	15, 373
XapI	RAATTY	1 cut(s)	160
XceI	RCATGY	1 cut(s)	334
XmiI	GTMKAC	1 cut(s)	78
XspI	CTAG	1 cut(s)	572
ZraI	GACGTC	1 cut(s)	72
ZrmI	AGTACT	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.