Rh5DG115300

BAG family molecular chaperone regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0012594
Physical Location & Seq
Forward (+)
10472058 .. 10476762
4705 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG115300.1

Sequence Viewer

Length: 555 bp
ATGATGAAGAGAAGGTCGACTCCGTACGGCAGAGACATGCCGTCTTCTACGACCAAGGACGAGGAAGTTGAGTGGGAAATGAGACCGGGAGGAATGTTGGTCCAGAAAAGAGTCGACAAGTCATCTGACGTTGCTCCGGTTCCGAACTTACGGCTTCGGATTGCTTTCGGTGCTCTCCGGTACGAGATCTCCGCCAGCTCTCAATCCACCTTTGGGGAGTTGAAGAAGGTTCTTACGGCAGAGACGGGGTTACAGCCCGGAGACCAGAGGCTAATATTCAGGGGAAAAGAGCGAGAAAACAGGGAGTACTTGGACATGTGCGGAGTCAAAGACCGATCAAAAGTCATGCTAATCGAGGACCCAGCGAGCATCGAGAGAAGAGCCAATGACATGCGGAGGAAAGCGAAGATCCAGACCGCTCATCGCGCCATCTCGGACGTGTGCTTGGAGGTCGATAAGCTCGCGGAGCAGGTGAGCAAAACCCACACCTCACTATTAGTCTCTTTTTTTTTTTTTCCTTTTTTTTTTTTGAGATTGAGTGAAGAAAGTGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BAG ubiquitin

Protein Analysis

184

Amino Acids

21.08

Weight (kDa)

9.3

Isoelectric Point (pI)

55.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ubiquitin PF00240 61 - 118 9.2e-09 Ubiquitin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 460
Acc36I ACCTGC 1 cut(s) 460
AccBSI CCGCTC 1 cut(s) 419
AccI GTMKAC 2 cut(s) 17, 114
AccII CGCG 2 cut(s) 426, 464
AciI CCGC 5 cut(s) 192, 321, 394, 417, 464
AclWI GGATC 1 cut(s) 403
AfaI GTAC 3 cut(s) 26, 182, 308
AfiI CCNNNNNNNGG 1 cut(s) 213
AflIII ACRYGT 2 cut(s) 315, 438
AgsI TTSAA 1 cut(s) 223
AhdI GACNNNNNGTC 1 cut(s) 40
AjiI CACGTC 1 cut(s) 439
AluBI AGCT 2 cut(s) 198, 460
AluI AGCT 2 cut(s) 198, 460
Alw21I GWGCWC 1 cut(s) 175
Alw26I GTCTC 5 cut(s) 27, 76, 236, 255, 505
AlwI GGATC 1 cut(s) 403
AspLEI GCGC 1 cut(s) 428
AspS9I GGNCC 2 cut(s) 100, 358
AsuC2I CCSGG 2 cut(s) 87, 258
AsuHPI GGTGA 1 cut(s) 484
AvaII GGWCC 2 cut(s) 100, 358
BbsI GAAGAC 1 cut(s) 36
Bbv12I GWGCWC 1 cut(s) 175
BccI CCATC 1 cut(s) 437
BceAI ACGGC 4 cut(s) 25, 43, 167, 252
BcnI CCSGG 2 cut(s) 87, 258
BcoDI GTCTC 5 cut(s) 27, 76, 236, 255, 505
BfuAI ACCTGC 1 cut(s) 460
BglII AGATCT 1 cut(s) 186
BmcAI AGTACT 1 cut(s) 308
Bme1390I CCNGG 2 cut(s) 87, 258
Bme18I GGWCC 2 cut(s) 100, 358
BmeRI GACNNNNNGTC 1 cut(s) 40
BmgBI CACGTC 1 cut(s) 439
BmgT120I GGNCC 2 cut(s) 100, 358
BmiI GGNNCC 2 cut(s) 141, 360
BmrFI CCNGG 2 cut(s) 87, 258
BmsI GCATC 1 cut(s) 378
BpiI GAAGAC 1 cut(s) 36
BpuMI CCSGG 2 cut(s) 87, 258
BsaI GGTCTC 2 cut(s) 76, 255
BsaJI CCNNGG 1 cut(s) 54
BsaWI WCCGGW 2 cut(s) 136, 177
BsaXI ACNNNNNCTCC 2 cut(s) 173, 203
Bsc4I CCNNNNNNNGG 1 cut(s) 213
BseDI CCNNGG 1 cut(s) 54
BseLI CCNNNNNNNGG 1 cut(s) 213
BseYI CCCAGC 1 cut(s) 361
Bsh1236I CGCG 2 cut(s) 426, 464
BsiHKAI GWGCWC 1 cut(s) 175
BsiSI CCGG 4 cut(s) 86, 137, 178, 258
BsiWI CGTACG 1 cut(s) 24
BslI CCNNNNNNNGG 1 cut(s) 213
BsmAI GTCTC 5 cut(s) 27, 76, 236, 255, 505
BsmBI CGTCTC 1 cut(s) 236
Bso31I GGTCTC 2 cut(s) 76, 255
Bsp1286I GDGCHC 1 cut(s) 175
Bsp143I GATC 3 cut(s) 186, 335, 408
BspACI CCGC 5 cut(s) 192, 321, 394, 417, 464
BspFNI CGCG 2 cut(s) 426, 464
BspLI GGNNCC 2 cut(s) 141, 360
BspMI ACCTGC 1 cut(s) 460
BspPI GGATC 1 cut(s) 403
BspQI GCTCTTC 1 cut(s) 373
BspTNI GGTCTC 2 cut(s) 76, 255
BsrBI CCGCTC 1 cut(s) 419
BssECI CCNNGG 1 cut(s) 54
BssMI GATC 3 cut(s) 186, 335, 408
BssT1I CCWWGG 1 cut(s) 54
Bst6I CTCTTC 2 cut(s) 2, 373
BstC8I GCNNGC 3 cut(s) 196, 367, 462
BstFNI CGCG 2 cut(s) 426, 464
BstHHI GCGC 1 cut(s) 428
BstKTI GATC 3 cut(s) 189, 338, 411
BstMAI GTCTC 5 cut(s) 27, 76, 236, 255, 505
BstMBI GATC 3 cut(s) 186, 335, 408
BstMWI GCNNNNNNNGC 3 cut(s) 170, 425, 466
BstNSI RCATGY 3 cut(s) 40, 319, 394
BstSCI CCNGG 2 cut(s) 85, 256
BstUI CGCG 2 cut(s) 426, 464
BstV2I GAAGAC 1 cut(s) 36
BstX2I RGATCY 2 cut(s) 186, 408
BstYI RGATCY 2 cut(s) 186, 408
BtgZI GCGATG 1 cut(s) 407
BtrI CACGTC 1 cut(s) 439
BveI ACCTGC 1 cut(s) 460
Cac8I GCNNGC 3 cut(s) 196, 367, 462
CfoI GCGC 1 cut(s) 428
Cfr13I GGNCC 2 cut(s) 100, 358
Csp6I GTAC 3 cut(s) 25, 181, 307
CviAII CATG 4 cut(s) 37, 316, 346, 391
CviJI RGCY 6 cut(s) 154, 198, 256, 271, 383, 460
CviKI_1 RGCY 6 cut(s) 154, 198, 256, 271, 383, 460
CviQI GTAC 3 cut(s) 25, 181, 307
DpnI GATC 3 cut(s) 188, 337, 410
DpnII GATC 3 cut(s) 186, 335, 408
DriI GACNNNNNGTC 1 cut(s) 40
Eam1104I CTCTTC 2 cut(s) 2, 373
Eam1105I GACNNNNNGTC 1 cut(s) 40
EarI CTCTTC 2 cut(s) 2, 373
EciI GGCGGA 1 cut(s) 181
Eco130I CCWWGG 1 cut(s) 54
Eco31I GGTCTC 2 cut(s) 76, 255
Eco47I GGWCC 2 cut(s) 100, 358
EcoO109I RGGNCCY 1 cut(s) 358
EcoT14I CCWWGG 1 cut(s) 54
ErhI CCWWGG 1 cut(s) 54
Esp3I CGTCTC 1 cut(s) 236
FaeI CATG 4 cut(s) 40, 319, 349, 394
FaiI YATR 4 cut(s) 38, 317, 347, 392
FatI CATG 4 cut(s) 36, 315, 345, 390
FblI GTMKAC 2 cut(s) 17, 114
GlaI GCGC 1 cut(s) 427
GsaI CCCAGC 1 cut(s) 365
HapII CCGG 4 cut(s) 86, 137, 178, 258
HhaI GCGC 1 cut(s) 428
Hin1II CATG 4 cut(s) 40, 319, 349, 394
Hin6I GCGC 1 cut(s) 426
HinP1I GCGC 1 cut(s) 426
HincII GTYRAC 2 cut(s) 18, 115
HindII GTYRAC 2 cut(s) 18, 115
HinfI GANTC 3 cut(s) 19, 111, 324
HpaII CCGG 4 cut(s) 86, 137, 178, 258
HphI GGTGA 1 cut(s) 484
Hpy166II GTNNAC 2 cut(s) 18, 115
Hpy188I TCNGA 4 cut(s) 127, 144, 159, 436
Hpy188III TCNNGA 3 cut(s) 103, 373, 412
Hpy8I GTNNAC 2 cut(s) 18, 115
HpyAV CCTTC 2 cut(s) 6, 220
HpyCH4IV ACGT 2 cut(s) 129, 438
HpyF10VI GCNNNNNNNGC 3 cut(s) 170, 425, 466
HpySE526I ACGT 2 cut(s) 129, 438
Hsp92II CATG 4 cut(s) 40, 319, 349, 394
HspAI GCGC 1 cut(s) 426
Kzo9I GATC 3 cut(s) 186, 335, 408
LguI GCTCTTC 1 cut(s) 373
LmnI GCTCC 2 cut(s) 139, 466
LweI GCATC 1 cut(s) 378
MaeII ACGT 2 cut(s) 129, 438
MaeIII GTNAC 1 cut(s) 249
MalI GATC 3 cut(s) 188, 337, 410
MbiI CCGCTC 1 cut(s) 419
MboI GATC 3 cut(s) 186, 335, 408
MboII GAAGA 6 cut(s) 19, 36, 235, 390, 418, 554
MflI RGATCY 2 cut(s) 186, 408
MhlI GDGCHC 1 cut(s) 175
MlyI GAGTC 3 cut(s) 13, 120, 333
MnlI CCTC 7 cut(s) 55, 83, 261, 349, 390, 442, 499
MspI CCGG 4 cut(s) 86, 137, 178, 258
MspR9I CCNGG 2 cut(s) 87, 258
MvnI CGCG 2 cut(s) 426, 464
MwoI GCNNNNNNNGC 3 cut(s) 170, 425, 466
NciI CCSGG 2 cut(s) 87, 258
NdeII GATC 3 cut(s) 186, 335, 408
NlaIII CATG 4 cut(s) 40, 319, 349, 394
NlaIV GGNNCC 2 cut(s) 141, 360
NspI RCATGY 3 cut(s) 40, 319, 394
PaqCI CACCTGC 1 cut(s) 460
PciI ACATGT 1 cut(s) 315
PciSI GCTCTTC 1 cut(s) 373
Pfl23II CGTACG 1 cut(s) 24
PleI GAGTC 3 cut(s) 13, 119, 332
PpsI GAGTC 3 cut(s) 13, 119, 332
PpuMI RGGWCCY 1 cut(s) 358
PscI ACATGT 1 cut(s) 315
Psp5II RGGWCCY 1 cut(s) 358
PspFI CCCAGC 1 cut(s) 361
PspLI CGTACG 1 cut(s) 24
PspN4I GGNNCC 2 cut(s) 141, 360
PspPI GGNCC 2 cut(s) 100, 358
PspPPI RGGWCCY 1 cut(s) 358
PsuI RGATCY 2 cut(s) 186, 408
RsaI GTAC 3 cut(s) 26, 182, 308
RsaNI GTAC 3 cut(s) 25, 181, 307
SalI GTCGAC 2 cut(s) 16, 113
SapI GCTCTTC 1 cut(s) 373
Sau3AI GATC 3 cut(s) 186, 335, 408
Sau96I GGNCC 2 cut(s) 100, 358
ScaI AGTACT 1 cut(s) 308
SchI GAGTC 3 cut(s) 13, 120, 333
ScrFI CCNGG 2 cut(s) 87, 258
SduI GDGCHC 1 cut(s) 175
SfaNI GCATC 1 cut(s) 378
SinI GGWCC 2 cut(s) 100, 358
SsiI CCGC 5 cut(s) 192, 321, 394, 417, 464
SspI AATATT 1 cut(s) 276
StyD4I CCNGG 2 cut(s) 85, 256
StyI CCWWGG 1 cut(s) 54
TaiI ACGT 2 cut(s) 132, 441
TaqI TCGA 5 cut(s) 17, 114, 354, 372, 453
TaqII GACCGA 1 cut(s) 348
TatI WGTACW 1 cut(s) 306
TspDTI ATGAA 1 cut(s) 20
TspGWI ACGGA 1 cut(s) 12
VpaK11BI GGWCC 2 cut(s) 100, 358
XceI RCATGY 3 cut(s) 40, 319, 394
XmiI GTMKAC 2 cut(s) 17, 114
ZrmI AGTACT 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.