Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0012594

Physical Location & Seq

Genomic Coordinates Forward (+)

11751901 .. 11754572

Gene Structure 2672 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032167

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGATGAAGAGAAGGTCGACTCCGTACGGCAGAGACATGCCGTCTTCTACGACCAAGGACGAGGAAGTTGAGTGGGAAATGAGACCGGGGGGAATGTTGGTCCAGAAACGAGTCGACAAGTCATCTGACGTTGCCCCGGTTCCGAACTTACGGCTTCGGATTGCTTTCGGTGCTCTCCGGTACGAGATCTCCGCCAGCTCTCAATCCACCTTTGGGGAGTTGAAGAAGGTTCTTACGGCGGAGACGGGGTTACAGCCCGGAGACCAGAGGCTAATATTCAGGGGAAAAGAGCGAGAAAACGGGGAGTACTTGGACATGTGCGGAGTCAAAGACCGATCAAAAGTCATGCTAATCGAGGACCCAGCAAGCATCGAGAGAAGAGCCAATGAGATGCGGAGGAAAGCGAAGATCCAGACCGCTCACCGCGCCATCTCGGACGTGTGCTTGGAGGTCGATAAGCTCGCGGAGCAGGTCTCTGCTATTGAAAAATCTATCTCAAATGGAGTCAAGGTACCAGAAGTTCAGATCACCACACTAATTGAGATGCTTATGAGACAAGCAATCAAGCTGGACAACATTTCTGCAGAAGGAGAAGGAGATGCTTCTGCTCAAAAGAGTTTGCAGGGCAAGAGGGTGCAGAAATGTGTTGAAACTCTTGATGCGATGAAGATATCAAATGCAAAGGTAAAGCCTGTGGTTGTGACAACCAAGTGGGAAACCTTTGATCCTCCTCCGACTACAGCCAAATGGGAACTCTTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG ubiquitin

Protein Analysis

255

Amino Acids

28.49

Weight (kDa)

8.86

Isoelectric Point (pI)

46.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	61 - 118	1.1e-08	Ubiquitin family
BAG	PF02179	144 - 221	3.5e-13	BAG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012594)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g09490 FvH4_3g09490 FvH4_3g09490
malus_domestica	MD05G1277400.v1.1 MD10G1256300.v1.1
prunus_persica	Prupe.4G087300_v2.0.a1
pyrus_communis	pycom05g25850
rosa_chinensis	RchiOBHm_Chr5g0015071
rosa_laevigata	RLG00000032167
rosa_multiflora	Rmu_co8401769.1_g000001 Rmu_sc0002209.1_g000001 Rmu_sc0009777.1_g000013
rosa_roxburghii	Rroxscaffold_1G00061460
rosa_rugosa	Rorug05G0024100
rosa_samantha	Rh5AG118500 Rh5BG116400 Rh5CG127300 Rh5DG115300
rosa_wichuraiana	Rw5G010240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	460
Acc65I	GGTACC	1 cut(s)	511
AccB1I	GGYRCC	1 cut(s)	511
AccBSI	CCGCTC	1 cut(s)	419
AccI	GTMKAC	2 cut(s)	17, 114
AccII	CGCG	2 cut(s)	426, 464
AciI	CCGC	7 cut(s)	192, 239, 321, 394, 417, 424, 464
AclWI	GGATC	2 cut(s)	403, 719
AfaI	GTAC	4 cut(s)	26, 182, 308, 513
AfiI	CCNNNNNNNGG	1 cut(s)	213
AflIII	ACRYGT	2 cut(s)	315, 438
AgsI	TTSAA	3 cut(s)	223, 485, 650
AhdI	GACNNNNNGTC	1 cut(s)	40
AjiI	CACGTC	1 cut(s)	439
AluBI	AGCT	3 cut(s)	198, 460, 568
AluI	AGCT	3 cut(s)	198, 460, 568
Alw21I	GWGCWC	1 cut(s)	175
Alw26I	GTCTC	6 cut(s)	27, 76, 236, 255, 478, 547
AlwI	GGATC	2 cut(s)	403, 719
Asp718I	GGTACC	1 cut(s)	511
AspLEI	GCGC	1 cut(s)	428
AspS9I	GGNCC	2 cut(s)	100, 358
AsuC2I	CCSGG	3 cut(s)	87, 137, 258
AsuHPI	GGTGA	2 cut(s)	413, 520
AvaII	GGWCC	2 cut(s)	100, 358
BanI	GGYRCC	1 cut(s)	511
BbsI	GAAGAC	1 cut(s)	36
Bbv12I	GWGCWC	1 cut(s)	175
BccI	CCATC	1 cut(s)	437
BceAI	ACGGC	4 cut(s)	25, 43, 167, 252
BcnI	CCSGG	3 cut(s)	87, 137, 258
BcoDI	GTCTC	6 cut(s)	27, 76, 236, 255, 478, 547
BfmI	CTRYAG	2 cut(s)	582, 738
BfuAI	ACCTGC	1 cut(s)	460
BglII	AGATCT	1 cut(s)	186
BmcAI	AGTACT	1 cut(s)	308
Bme1390I	CCNGG	3 cut(s)	87, 137, 258
Bme18I	GGWCC	2 cut(s)	100, 358
BmeRI	GACNNNNNGTC	1 cut(s)	40
BmgBI	CACGTC	1 cut(s)	439
BmgT120I	GGNCC	2 cut(s)	100, 358
BmiI	GGNNCC	3 cut(s)	141, 360, 513
BmrFI	CCNGG	3 cut(s)	87, 137, 258
BmsI	GCATC	5 cut(s)	378, 381, 534, 589, 649
BpiI	GAAGAC	1 cut(s)	36
BplI	GAGNNNNNCTC	2 cut(s)	458, 490
BpuMI	CCSGG	3 cut(s)	87, 137, 258
BsaI	GGTCTC	3 cut(s)	76, 255, 478
BsaJI	CCNNGG	3 cut(s)	54, 86, 135
BsaWI	WCCGGW	1 cut(s)	177
BsaXI	ACNNNNNCTCC	6 cut(s)	173, 203, 233, 263, 495, 525
Bsc4I	CCNNNNNNNGG	1 cut(s)	213
BseDI	CCNNGG	3 cut(s)	54, 86, 135
BseLI	CCNNNNNNNGG	1 cut(s)	213
BseRI	GAGGAG	1 cut(s)	720
BseYI	CCCAGC	1 cut(s)	361
BsgI	GTGCAG	1 cut(s)	656
Bsh1236I	CGCG	2 cut(s)	426, 464
BshNI	GGYRCC	1 cut(s)	511
BsiHKAI	GWGCWC	1 cut(s)	175
BsiSI	CCGG	4 cut(s)	86, 137, 178, 258
BsiWI	CGTACG	1 cut(s)	24
BslI	CCNNNNNNNGG	1 cut(s)	213
BsmAI	GTCTC	6 cut(s)	27, 76, 236, 255, 478, 547
BsmBI	CGTCTC	1 cut(s)	236
Bso31I	GGTCTC	3 cut(s)	76, 255, 478
Bsp1286I	GDGCHC	1 cut(s)	175
Bsp143I	GATC	5 cut(s)	186, 335, 408, 525, 724
BspACI	CCGC	7 cut(s)	192, 239, 321, 394, 417, 424, 464
BspFNI	CGCG	2 cut(s)	426, 464
BspLI	GGNNCC	3 cut(s)	141, 360, 513
BspMAI	CTGCAG	1 cut(s)	586
BspMI	ACCTGC	1 cut(s)	460
BspPI	GGATC	2 cut(s)	403, 719
BspQI	GCTCTTC	1 cut(s)	373
BspT107I	GGYRCC	1 cut(s)	511
BspTNI	GGTCTC	3 cut(s)	76, 255, 478
BsrBI	CCGCTC	1 cut(s)	419
BssECI	CCNNGG	3 cut(s)	54, 86, 135
BssMI	GATC	5 cut(s)	186, 335, 408, 525, 724
BssT1I	CCWWGG	1 cut(s)	54
Bst6I	CTCTTC	2 cut(s)	2, 373
BstC8I	GCNNGC	3 cut(s)	196, 367, 462
BstFNI	CGCG	2 cut(s)	426, 464
BstHHI	GCGC	1 cut(s)	428
BstKTI	GATC	5 cut(s)	189, 338, 411, 528, 727
BstMAI	GTCTC	6 cut(s)	27, 76, 236, 255, 478, 547
BstMBI	GATC	5 cut(s)	186, 335, 408, 525, 724
BstMWI	GCNNNNNNNGC	3 cut(s)	170, 425, 466
BstNSI	RCATGY	2 cut(s)	40, 319
BstSCI	CCNGG	3 cut(s)	85, 135, 256
BstSFI	CTRYAG	2 cut(s)	582, 738
BstUI	CGCG	2 cut(s)	426, 464
BstV2I	GAAGAC	1 cut(s)	36
BstX2I	RGATCY	2 cut(s)	186, 408
BstYI	RGATCY	2 cut(s)	186, 408
BtgZI	GCGATG	1 cut(s)	677
BtrI	CACGTC	1 cut(s)	439
BveI	ACCTGC	1 cut(s)	460
Cac8I	GCNNGC	3 cut(s)	196, 367, 462
CfoI	GCGC	1 cut(s)	428
Cfr13I	GGNCC	2 cut(s)	100, 358
Csp6I	GTAC	4 cut(s)	25, 181, 307, 512
CspCI	CAANNNNNGTGG	2 cut(s)	520, 555
CviAII	CATG	3 cut(s)	37, 316, 346
CviJI	RGCY	9 cut(s)	154, 198, 256, 271, 383, 460, 568, 691, 743
CviKI_1	RGCY	9 cut(s)	154, 198, 256, 271, 383, 460, 568, 691, 743
CviQI	GTAC	4 cut(s)	25, 181, 307, 512
DpnI	GATC	5 cut(s)	188, 337, 410, 527, 726
DpnII	GATC	5 cut(s)	186, 335, 408, 525, 724
DriI	GACNNNNNGTC	1 cut(s)	40
Eam1104I	CTCTTC	2 cut(s)	2, 373
Eam1105I	GACNNNNNGTC	1 cut(s)	40
EarI	CTCTTC	2 cut(s)	2, 373
EciI	GGCGGA	2 cut(s)	181, 254
Eco130I	CCWWGG	1 cut(s)	54
Eco31I	GGTCTC	3 cut(s)	76, 255, 478
Eco32I	GATATC	1 cut(s)	672
Eco47I	GGWCC	2 cut(s)	100, 358
EcoO109I	RGGNCCY	1 cut(s)	358
EcoRV	GATATC	1 cut(s)	672
EcoT14I	CCWWGG	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	54
Esp3I	CGTCTC	1 cut(s)	236
FaeI	CATG	3 cut(s)	40, 319, 349
FaiI	YATR	4 cut(s)	38, 317, 347, 551
FatI	CATG	3 cut(s)	36, 315, 345
FblI	GTMKAC	2 cut(s)	17, 114
GlaI	GCGC	1 cut(s)	427
GsaI	CCCAGC	1 cut(s)	365
HapII	CCGG	4 cut(s)	86, 137, 178, 258
HhaI	GCGC	1 cut(s)	428
Hin1II	CATG	3 cut(s)	40, 319, 349
Hin6I	GCGC	1 cut(s)	426
HinP1I	GCGC	1 cut(s)	426
HincII	GTYRAC	2 cut(s)	18, 115
HindII	GTYRAC	2 cut(s)	18, 115
HinfI	GANTC	4 cut(s)	19, 111, 324, 504
HpaII	CCGG	4 cut(s)	86, 137, 178, 258
HphI	GGTGA	2 cut(s)	413, 520
Hpy166II	GTNNAC	2 cut(s)	18, 115
Hpy188I	TCNGA	6 cut(s)	127, 144, 159, 436, 525, 735
Hpy188III	TCNNGA	4 cut(s)	103, 373, 412, 656
Hpy8I	GTNNAC	2 cut(s)	18, 115
HpyAV	CCTTC	4 cut(s)	6, 220, 581, 587
HpyCH4IV	ACGT	2 cut(s)	129, 438
HpyCH4V	TGCA	4 cut(s)	584, 622, 637, 680
HpyF10VI	GCNNNNNNNGC	3 cut(s)	170, 425, 466
HpySE526I	ACGT	2 cut(s)	129, 438
Hsp92II	CATG	3 cut(s)	40, 319, 349
HspAI	GCGC	1 cut(s)	426
KpnI	GGTACC	1 cut(s)	515
Kzo9I	GATC	5 cut(s)	186, 335, 408, 525, 724
LguI	GCTCTTC	1 cut(s)	373
LmnI	GCTCC	1 cut(s)	466
LweI	GCATC	5 cut(s)	378, 381, 534, 589, 649
MaeII	ACGT	2 cut(s)	129, 438
MaeIII	GTNAC	2 cut(s)	249, 700
MalI	GATC	5 cut(s)	188, 337, 410, 527, 726
MbiI	CCGCTC	1 cut(s)	419
MboI	GATC	5 cut(s)	186, 335, 408, 525, 724
MboII	GAAGA	6 cut(s)	19, 36, 235, 390, 418, 679
MflI	RGATCY	2 cut(s)	186, 408
MhlI	GDGCHC	1 cut(s)	175
MluCI	AATT	1 cut(s)	537
MlyI	GAGTC	4 cut(s)	13, 120, 333, 513
MmeI	TCCRAC	1 cut(s)	758
MnlI	CCTC	8 cut(s)	55, 261, 349, 390, 442, 624, 738, 741
MseI	TTAA	1 cut(s)	763
MspI	CCGG	4 cut(s)	86, 137, 178, 258
MspR9I	CCNGG	3 cut(s)	87, 137, 258
MvnI	CGCG	2 cut(s)	426, 464
MwoI	GCNNNNNNNGC	3 cut(s)	170, 425, 466
NciI	CCSGG	3 cut(s)	87, 137, 258
NdeII	GATC	5 cut(s)	186, 335, 408, 525, 724
NlaIII	CATG	3 cut(s)	40, 319, 349
NlaIV	GGNNCC	3 cut(s)	141, 360, 513
NmuCI	GTSAC	1 cut(s)	700
NspI	RCATGY	2 cut(s)	40, 319
PciI	ACATGT	1 cut(s)	315
PciSI	GCTCTTC	1 cut(s)	373
Pfl23II	CGTACG	1 cut(s)	24
PleI	GAGTC	4 cut(s)	13, 119, 332, 512
PpsI	GAGTC	4 cut(s)	13, 119, 332, 512
PpuMI	RGGWCCY	1 cut(s)	358
PscI	ACATGT	1 cut(s)	315
Psp5II	RGGWCCY	1 cut(s)	358
PspFI	CCCAGC	1 cut(s)	361
PspLI	CGTACG	1 cut(s)	24
PspN4I	GGNNCC	3 cut(s)	141, 360, 513
PspPI	GGNCC	2 cut(s)	100, 358
PspPPI	RGGWCCY	1 cut(s)	358
PsrI	GAACNNNNNNTAC	2 cut(s)	504, 536
PstI	CTGCAG	1 cut(s)	586
PsuI	RGATCY	2 cut(s)	186, 408
RsaI	GTAC	4 cut(s)	26, 182, 308, 513
RsaNI	GTAC	4 cut(s)	25, 181, 307, 512
SalI	GTCGAC	2 cut(s)	16, 113
SapI	GCTCTTC	1 cut(s)	373
SaqAI	TTAA	1 cut(s)	763
Sau3AI	GATC	5 cut(s)	186, 335, 408, 525, 724
Sau96I	GGNCC	2 cut(s)	100, 358
ScaI	AGTACT	1 cut(s)	308
SchI	GAGTC	4 cut(s)	13, 120, 333, 513
ScrFI	CCNGG	3 cut(s)	87, 137, 258
SduI	GDGCHC	1 cut(s)	175
SfaNI	GCATC	5 cut(s)	378, 381, 534, 589, 649
SfcI	CTRYAG	2 cut(s)	582, 738
SinI	GGWCC	2 cut(s)	100, 358
Sse9I	AATT	1 cut(s)	537
SsiI	CCGC	7 cut(s)	192, 239, 321, 394, 417, 424, 464
SspI	AATATT	1 cut(s)	276
StyD4I	CCNGG	3 cut(s)	85, 135, 256
StyI	CCWWGG	1 cut(s)	54
TaiI	ACGT	2 cut(s)	132, 441
TaqI	TCGA	5 cut(s)	17, 114, 354, 372, 453
TaqII	GACCGA	1 cut(s)	348
TasI	AATT	1 cut(s)	537
TatI	WGTACW	1 cut(s)	306
Tru1I	TTAA	1 cut(s)	763
Tru9I	TTAA	1 cut(s)	763
TseFI	GTSAC	1 cut(s)	700
Tsp45I	GTSAC	1 cut(s)	700
TspDTI	ATGAA	2 cut(s)	20, 680
TspGWI	ACGGA	1 cut(s)	12
VpaK11BI	GGWCC	2 cut(s)	100, 358
XceI	RCATGY	2 cut(s)	40, 319
XmiI	GTMKAC	2 cut(s)	17, 114
ZrmI	AGTACT	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.