Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0012594

Physical Location & Seq

Genomic Coordinates Reverse (-)

35077513 .. 35080527

Gene Structure 3015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1256300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGATGAAGCGGAGGTCCAATGGGAAAGGCAGAGCGGGGGATAGCCGTGATAATATGGCGCAGTCCTCGACGTCGAGGGACGAGGAAGTTGCGTGGGAAATGAGGCCCGGAGGAATGCTGGTCCAGAAAAGAGGAGAGAAATCCGACGCTCCGGCTCCGAATTTGTGTCTCCGGATTTCATTCGGCGCTCTCCGTTACGAGATGTCGGCCAGCGCTCAGTCCACATTCGGGGAGTTGAAGAAGGCTCTTACGGCGAAGGCAGGGCTACAGCCTGGCGAGCAGAGGCTGCTATTCAGAGGAAAAGAGCGAGAAAACGGCGAGTACTTGGACATGTGCGGAGTCAAAGATCGTTCAAAAGTCGTACTGATGGAGGACCCAACGGGCATCGAGAGGAGGGCCGTTGAGATGCGTAGGAATGCCAGGATCCAGACCGCACATCGCGCCATACTGAACGTGTCCATGGAGGTTGACAAGCTCGCGGAGCAGGTCTCGGCAATTGAAAATTCCATATCAAATGGTGTCAAAGTACCAGAACTTCAGATAACCACACCAATTGAGATGCTAATGAGACAAGCAATCAAGCTGGACAAAATTTCTGCAGAAGGAGATGCTTCTGCTCAAAAGAATTTGCAGGGCAAGAGGGTGCAGAAATGTGTTGAAAGTCTGGATGTGCTGAAGATATCAAATGCAAAGGTAAAGCCTGTTGTTGTGACAACCAAGTGGGAGACTTTCGACCCTCCTCCAACCACAGCTAAATGGGAGTTTTTCGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG ubiquitin

Protein Analysis

258

Amino Acids

28.64

Weight (kDa)

9.4

Isoelectric Point (pI)

45.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	66 - 124	1.5e-08	Ubiquitin family
BAG	PF02179	150 - 224	3.2e-11	BAG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012594)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g09490 FvH4_3g09490 FvH4_3g09490
malus_domestica	MD05G1277400.v1.1 MD10G1256300.v1.1
prunus_persica	Prupe.4G087300_v2.0.a1
pyrus_communis	pycom05g25850
rosa_chinensis	RchiOBHm_Chr5g0015071
rosa_laevigata	RLG00000032167
rosa_multiflora	Rmu_co8401769.1_g000001 Rmu_sc0002209.1_g000001 Rmu_sc0009777.1_g000013
rosa_roxburghii	Rroxscaffold_1G00061460
rosa_rugosa	Rorug05G0024100
rosa_samantha	Rh5AG118500 Rh5BG116400 Rh5CG127300 Rh5DG115300
rosa_wichuraiana	Rw5G010240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	74
Acc36I	ACCTGC	1 cut(s)	475
AccBSI	CCGCTC	1 cut(s)	35
AccII	CGCG	2 cut(s)	441, 479
AccIII	TCCGGA	1 cut(s)	171
AciI	CCGC	5 cut(s)	10, 35, 336, 432, 479
AclWI	GGATC	2 cut(s)	418, 431
AcoI	YGGCCR	1 cut(s)	207
AcsI	RAATTY	4 cut(s)	160, 502, 591, 625
AcuI	CTGAAG	2 cut(s)	521, 695
AcyI	GRCGYC	1 cut(s)	71
AfaI	GTAC	3 cut(s)	323, 363, 528
AfeI	AGCGCT	1 cut(s)	214
AfiI	CCNNNNNNNGG	1 cut(s)	228
AflIII	ACRYGT	2 cut(s)	330, 453
AgsI	TTSAA	4 cut(s)	238, 354, 500, 659
AjnI	CCWGG	2 cut(s)	271, 419
AluBI	AGCT	3 cut(s)	475, 583, 752
AluI	AGCT	3 cut(s)	475, 583, 752
Alw26I	GTCTC	4 cut(s)	173, 493, 562, 719
AlwI	GGATC	2 cut(s)	418, 431
AlwNI	CAGNNNCTG	1 cut(s)	286
Aor13HI	TCCGGA	1 cut(s)	171
Aor51HI	AGCGCT	1 cut(s)	214
AoxI	GGCC	3 cut(s)	104, 207, 396
ApeKI	GCWGC	1 cut(s)	286
ApoI	RAATTY	4 cut(s)	160, 502, 591, 625
AspLEI	GCGC	4 cut(s)	61, 188, 215, 443
AspS9I	GGNCC	5 cut(s)	15, 105, 121, 373, 396
AsuC2I	CCSGG	1 cut(s)	108
AvaII	GGWCC	3 cut(s)	15, 121, 373
BamHI	GGATCC	1 cut(s)	423
BarI	GAAGNNNNNNTAC	2 cut(s)	519, 551
BbvI	GCAGC	1 cut(s)	273
BccI	CCATC	1 cut(s)	361
BceAI	ACGGC	4 cut(s)	30, 267, 331, 383
BcgI	CGANNNNNNTGC	2 cut(s)	71, 105
BciT130I	CCWGG	2 cut(s)	273, 421
BcnI	CCSGG	1 cut(s)	108
BcoDI	GTCTC	4 cut(s)	173, 493, 562, 719
BfmI	CTRYAG	2 cut(s)	266, 597
BfoI	RGCGCY	2 cut(s)	189, 216
BfuAI	ACCTGC	1 cut(s)	475
BisI	GCNGC	1 cut(s)	287
BlsI	GCNGC	1 cut(s)	288
BmcAI	AGTACT	1 cut(s)	323
Bme1390I	CCNGG	3 cut(s)	108, 273, 421
Bme18I	GGWCC	3 cut(s)	15, 121, 373
BmgT120I	GGNCC	5 cut(s)	15, 105, 121, 373, 396
BmiI	GGNNCC	3 cut(s)	156, 375, 425
BmrFI	CCNGG	3 cut(s)	108, 273, 421
BmsI	GCATC	4 cut(s)	393, 396, 549, 598
BplI	GAGNNNNNCTC	2 cut(s)	473, 505
BpuMI	CCSGG	1 cut(s)	108
BsaHI	GRCGYC	1 cut(s)	71
BsaI	GGTCTC	1 cut(s)	493
BsaJI	CCNNGG	1 cut(s)	459
BsaWI	WCCGGW	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	1 cut(s)	228
BseAI	TCCGGA	1 cut(s)	171
BseBI	CCWGG	2 cut(s)	273, 421
BseDI	CCNNGG	1 cut(s)	459
BseGI	GGATG	1 cut(s)	673
BseLI	CCNNNNNNNGG	1 cut(s)	228
BseMII	CTCAG	1 cut(s)	230
BseRI	GAGGAG	3 cut(s)	147, 406, 729
BseXI	GCAGC	1 cut(s)	273
BsgI	GTGCAG	1 cut(s)	665
Bsh1236I	CGCG	2 cut(s)	441, 479
BshFI	GGCC	3 cut(s)	106, 209, 398
BsiSI	CCGG	3 cut(s)	108, 152, 172
BslFI	GGGAC	1 cut(s)	92
BslI	CCNNNNNNNGG	1 cut(s)	228
BsmAI	GTCTC	4 cut(s)	173, 493, 562, 719
BsmFI	GGGAC	1 cut(s)	92
BsmI	GAATGC	2 cut(s)	120, 421
BsnI	GGCC	3 cut(s)	106, 209, 398
Bso31I	GGTCTC	1 cut(s)	493
Bsp13I	TCCGGA	1 cut(s)	171
Bsp143I	GATC	2 cut(s)	346, 423
Bsp19I	CCATGG	1 cut(s)	459
BspACI	CCGC	5 cut(s)	10, 35, 336, 432, 479
BspANI	GGCC	3 cut(s)	106, 209, 398
BspCNI	CTCAG	1 cut(s)	229
BspEI	TCCGGA	1 cut(s)	171
BspFNI	CGCG	2 cut(s)	441, 479
BspLI	GGNNCC	3 cut(s)	156, 375, 425
BspMAI	CTGCAG	1 cut(s)	601
BspMI	ACCTGC	1 cut(s)	475
BspPI	GGATC	2 cut(s)	418, 431
BspTNI	GGTCTC	1 cut(s)	493
BsrBI	CCGCTC	1 cut(s)	35
BssECI	CCNNGG	1 cut(s)	459
BssMI	GATC	2 cut(s)	346, 423
BssNI	GRCGYC	1 cut(s)	71
BssT1I	CCWWGG	1 cut(s)	459
Bst2UI	CCWGG	2 cut(s)	273, 421
BstACI	GRCGYC	1 cut(s)	71
BstAPI	GCANNNNNTGC	1 cut(s)	286
BstC8I	GCNNGC	3 cut(s)	211, 278, 477
BstDEI	CTNAG	1 cut(s)	216
BstDSI	CCRYGG	1 cut(s)	459
BstF5I	GGATG	1 cut(s)	673
BstFNI	CGCG	2 cut(s)	441, 479
BstH2I	RGCGCY	2 cut(s)	189, 216
BstHHI	GCGC	4 cut(s)	61, 188, 215, 443
BstKTI	GATC	2 cut(s)	349, 426
BstMAI	GTCTC	4 cut(s)	173, 493, 562, 719
BstMBI	GATC	2 cut(s)	346, 423
BstMWI	GCNNNNNNNGC	5 cut(s)	251, 277, 286, 440, 481
BstNI	CCWGG	2 cut(s)	273, 421
BstNSI	RCATGY	1 cut(s)	334
BstSCI	CCNGG	3 cut(s)	106, 271, 419
BstSFI	CTRYAG	2 cut(s)	266, 597
BstUI	CGCG	2 cut(s)	441, 479
BstV1I	GCAGC	1 cut(s)	273
BstX2I	RGATCY	1 cut(s)	423
BstYI	RGATCY	1 cut(s)	423
BsuRI	GGCC	3 cut(s)	106, 209, 398
BtgI	CCRYGG	1 cut(s)	459
BtgZI	GCGATG	1 cut(s)	422
BtsCI	GGATG	1 cut(s)	673
BveI	ACCTGC	1 cut(s)	475
Cac8I	GCNNGC	3 cut(s)	211, 278, 477
CaiI	CAGNNNCTG	1 cut(s)	286
CfoI	GCGC	4 cut(s)	61, 188, 215, 443
Cfr13I	GGNCC	5 cut(s)	15, 105, 121, 373, 396
CseI	GACGC	1 cut(s)	155
Csp6I	GTAC	3 cut(s)	322, 362, 527
CspCI	CAANNNNNGTGG	2 cut(s)	535, 570
CviAII	CATG	2 cut(s)	331, 460
CviQI	GTAC	3 cut(s)	322, 362, 527
DdeI	CTNAG	1 cut(s)	216
DpnI	GATC	2 cut(s)	348, 425
DpnII	GATC	2 cut(s)	346, 423
EaeI	YGGCCR	1 cut(s)	207
Eco130I	CCWWGG	1 cut(s)	459
Eco31I	GGTCTC	1 cut(s)	493
Eco32I	GATATC	1 cut(s)	681
Eco47I	GGWCC	3 cut(s)	15, 121, 373
Eco47III	AGCGCT	1 cut(s)	214
Eco57I	CTGAAG	2 cut(s)	521, 695
EcoO109I	RGGNCCY	1 cut(s)	373
EcoRII	CCWGG	2 cut(s)	271, 419
EcoRV	GATATC	1 cut(s)	681
EcoT14I	CCWWGG	1 cut(s)	459
ErhI	CCWWGG	1 cut(s)	459
FaeI	CATG	2 cut(s)	334, 463
FaiI	YATR	5 cut(s)	56, 332, 446, 461, 509
FaqI	GGGAC	1 cut(s)	92
FatI	CATG	2 cut(s)	330, 459
FauI	CCCGC	1 cut(s)	28
Fnu4HI	GCNGC	1 cut(s)	287
FokI	GGATG	1 cut(s)	680
Fsp4HI	GCNGC	1 cut(s)	287
GlaI	GCGC	4 cut(s)	60, 187, 214, 442
GluI	GCNGC	1 cut(s)	287
HaeII	RGCGCY	2 cut(s)	189, 216
HaeIII	GGCC	3 cut(s)	106, 209, 398
HapII	CCGG	3 cut(s)	108, 152, 172
HgaI	GACGC	1 cut(s)	155
HhaI	GCGC	4 cut(s)	61, 188, 215, 443
Hin1I	GRCGYC	1 cut(s)	71
Hin1II	CATG	2 cut(s)	334, 463
Hin6I	GCGC	4 cut(s)	59, 186, 213, 441
HinP1I	GCGC	4 cut(s)	59, 186, 213, 441
HincII	GTYRAC	1 cut(s)	469
HindII	GTYRAC	1 cut(s)	469
HinfI	GANTC	1 cut(s)	339
HpaII	CCGG	3 cut(s)	108, 152, 172
Hpy166II	GTNNAC	2 cut(s)	222, 469
Hpy188I	TCNGA	4 cut(s)	145, 159, 296, 540
Hpy188III	TCNNGA	5 cut(s)	124, 172, 388, 427, 665
Hpy8I	GTNNAC	2 cut(s)	222, 469
Hpy99I	CGWCG	3 cut(s)	73, 76, 149
HpyAV	CCTTC	3 cut(s)	235, 250, 596
HpyCH4IV	ACGT	2 cut(s)	71, 453
HpyCH4V	TGCA	4 cut(s)	599, 631, 646, 689
HpyF10VI	GCNNNNNNNGC	5 cut(s)	251, 277, 286, 440, 481
HpyF3I	CTNAG	1 cut(s)	216
HpySE526I	ACGT	2 cut(s)	71, 453
Hsp92I	GRCGYC	1 cut(s)	71
Hsp92II	CATG	2 cut(s)	334, 463
HspAI	GCGC	4 cut(s)	59, 186, 213, 441
Kpn2I	TCCGGA	1 cut(s)	171
Kzo9I	GATC	2 cut(s)	346, 423
LmnI	GCTCC	3 cut(s)	154, 160, 481
Lsp1109I	GCAGC	1 cut(s)	273
LweI	GCATC	4 cut(s)	393, 396, 549, 598
MaeII	ACGT	2 cut(s)	71, 453
MaeIII	GTNAC	2 cut(s)	194, 709
MalI	GATC	2 cut(s)	348, 425
MbiI	CCGCTC	1 cut(s)	35
MboI	GATC	2 cut(s)	346, 423
MboII	GAAGA	2 cut(s)	250, 688
MfeI	CAATTG	2 cut(s)	495, 552
MflI	RGATCY	1 cut(s)	423
MluCI	AATT	6 cut(s)	160, 495, 502, 552, 591, 625
MlyI	GAGTC	1 cut(s)	348
MmeI	TCCRAC	2 cut(s)	168, 767
MroI	TCCGGA	1 cut(s)	171
MseI	TTAA	1 cut(s)	772
MspI	CCGG	3 cut(s)	108, 152, 172
MspR9I	CCNGG	3 cut(s)	108, 273, 421
MunI	CAATTG	2 cut(s)	495, 552
Mva1269I	GAATGC	2 cut(s)	120, 421
MvaI	CCWGG	2 cut(s)	273, 421
MvnI	CGCG	2 cut(s)	441, 479
MwoI	GCNNNNNNNGC	5 cut(s)	251, 277, 286, 440, 481
NciI	CCSGG	1 cut(s)	108
NcoI	CCATGG	1 cut(s)	459
NdeII	GATC	2 cut(s)	346, 423
NlaIII	CATG	2 cut(s)	334, 463
NlaIV	GGNNCC	3 cut(s)	156, 375, 425
NmeAIII	GCCGAG	1 cut(s)	470
NmuCI	GTSAC	1 cut(s)	709
NspI	RCATGY	1 cut(s)	334
PciI	ACATGT	1 cut(s)	330
PctI	GAATGC	2 cut(s)	120, 421
PkrI	GCNGC	1 cut(s)	288
PleI	GAGTC	1 cut(s)	347
PpsI	GAGTC	1 cut(s)	347
PpuMI	RGGWCCY	1 cut(s)	373
PscI	ACATGT	1 cut(s)	330
Psp5II	RGGWCCY	1 cut(s)	373
Psp6I	CCWGG	2 cut(s)	271, 419
PspGI	CCWGG	2 cut(s)	271, 419
PspN4I	GGNNCC	3 cut(s)	156, 375, 425
PspPI	GGNCC	5 cut(s)	15, 105, 121, 373, 396
PspPPI	RGGWCCY	1 cut(s)	373
PstI	CTGCAG	1 cut(s)	601
PstNI	CAGNNNCTG	1 cut(s)	286
PsuI	RGATCY	1 cut(s)	423
RsaI	GTAC	3 cut(s)	323, 363, 528
RsaNI	GTAC	3 cut(s)	322, 362, 527
SaqAI	TTAA	1 cut(s)	772
SatI	GCNGC	1 cut(s)	287
Sau3AI	GATC	2 cut(s)	346, 423
Sau96I	GGNCC	5 cut(s)	15, 105, 121, 373, 396
ScaI	AGTACT	1 cut(s)	323
SchI	GAGTC	1 cut(s)	348
ScrFI	CCNGG	3 cut(s)	108, 273, 421
SetI	ASST	9 cut(s)	17, 74, 456, 468, 477, 489, 585, 696, 754
SfaNI	GCATC	4 cut(s)	393, 396, 549, 598
SfcI	CTRYAG	2 cut(s)	266, 597
SinI	GGWCC	3 cut(s)	15, 121, 373
Sse9I	AATT	6 cut(s)	160, 495, 502, 552, 591, 625
SsiI	CCGC	5 cut(s)	10, 35, 336, 432, 479
StyD4I	CCNGG	3 cut(s)	106, 271, 419
StyI	CCWWGG	1 cut(s)	459
TaiI	ACGT	2 cut(s)	74, 456
TaqI	TCGA	5 cut(s)	68, 74, 387, 732, 768
TasI	AATT	6 cut(s)	160, 495, 502, 552, 591, 625
TatI	WGTACW	1 cut(s)	321
Tru1I	TTAA	1 cut(s)	772
Tru9I	TTAA	1 cut(s)	772
TseFI	GTSAC	1 cut(s)	709
TseI	GCWGC	1 cut(s)	286
Tsp45I	GTSAC	1 cut(s)	709
TspDTI	ATGAA	2 cut(s)	20, 168
TspGWI	ACGGA	1 cut(s)	182
VpaK11BI	GGWCC	3 cut(s)	15, 121, 373
XapI	RAATTY	4 cut(s)	160, 502, 591, 625
XceI	RCATGY	1 cut(s)	334
ZraI	GACGTC	1 cut(s)	72
ZrmI	AGTACT	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.