Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0012594

Physical Location & Seq

Genomic Coordinates Reverse (-)

41213885 .. 41217510

Gene Structure 3626 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1277400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGATGAAGCGGAGGTCCAATGCAAACGGCAGAGCGCGGGATAGCGCCAACAGTACGACGTCGGTCGACGAGGAAGTTGCGTGGGAAATGAGGCCCGGAGGAATGCTGGTGCAGAAGAGAGGTGAGAAATCGGACGCTCCGGCTCCGAATTTGCGGCTTCGGATTGCTTTCGGTGCTCTCCGTTACGAGATCTCGGCCAGTGCTCAGTCCACATTCGGGGAGTTGAAGAAGGTTCTTACGGCAGAGACAGGGTTACAGCCTGGCGAGCAGAGGCTGTTATTCAGAGGAAAAGAGCGAGAAAACGGCGAGTACTTGGACATGTGCGGAGTCAAAGACCGGTCAAAAGTCGTACTGGTGGAGGACCCAGCGAGCATCGCGAGGAGGGCCGTTGAGATGCGTAGGAATGCCAAGATCCAGGCCGCACATCGCGCCATACTGGACGTGTCCAGGGAGGTTGACAAGCTCGCGGAGCAGGTCTCTGCAATTGAAAAATCCATCTCAAATGGAGTCAAAGTACCAGAACTTCAGATAACTACACTAATTGAGATGCTCATGAGACTAGCAATCAAGCTGGACAACATTTCTGCAGAAGGAGATGCTTCTGCTCAGAAGAATCTGCAGGGCAAGAGGGTGCAGAAATGTGTTGAAAGTCTGGATGTACTGAAGATATCAAATGCAAAGGTGAAGCCTGTTGTGGTGACAACCAAATGGGAGCCTGTTGTGACAACCAAGTGGGAGACTTTTGACCCTCCTACAACCACAGCTCAATGGGAGTTGTTCGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG ubiquitin

Protein Analysis

262

Amino Acids

29.04

Weight (kDa)

9.28

Isoelectric Point (pI)

41.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	62 - 119	1.5e-08	Ubiquitin family
BAG	PF02179	145 - 220	1.9e-12	BAG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012594)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g09490 FvH4_3g09490 FvH4_3g09490
malus_domestica	MD05G1277400.v1.1 MD10G1256300.v1.1
prunus_persica	Prupe.4G087300_v2.0.a1
pyrus_communis	pycom05g25850
rosa_chinensis	RchiOBHm_Chr5g0015071
rosa_laevigata	RLG00000032167
rosa_multiflora	Rmu_co8401769.1_g000001 Rmu_sc0002209.1_g000001 Rmu_sc0009777.1_g000013
rosa_roxburghii	Rroxscaffold_1G00061460
rosa_rugosa	Rorug05G0024100
rosa_samantha	Rh5AG118500 Rh5BG116400 Rh5CG127300 Rh5DG115300
rosa_wichuraiana	Rw5G010240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	62
Acc36I	ACCTGC	1 cut(s)	463
AccI	GTMKAC	1 cut(s)	66
AccII	CGCG	4 cut(s)	37, 377, 429, 467
AciI	CCGC	6 cut(s)	10, 37, 154, 324, 420, 467
AclWI	GGATC	1 cut(s)	406
AcoI	YGGCCR	1 cut(s)	195
AcsI	RAATTY	1 cut(s)	148
AcuI	CTGAAG	2 cut(s)	509, 683
AcyI	GRCGYC	1 cut(s)	59
AfaI	GTAC	5 cut(s)	55, 311, 351, 516, 660
AfiI	CCNNNNNNNGG	1 cut(s)	216
AflIII	ACRYGT	2 cut(s)	318, 441
AgeI	ACCGGT	1 cut(s)	336
AgsI	TTSAA	3 cut(s)	226, 488, 647
AjiI	CACGTC	1 cut(s)	442
AjnI	CCWGG	3 cut(s)	259, 414, 446
AluBI	AGCT	3 cut(s)	463, 571, 764
AluI	AGCT	3 cut(s)	463, 571, 764
Alw21I	GWGCWC	2 cut(s)	178, 205
Alw26I	GTCTC	4 cut(s)	239, 481, 550, 731
AlwI	GGATC	1 cut(s)	406
AlwNI	CAGNNNCTG	1 cut(s)	274
AoxI	GGCC	4 cut(s)	92, 195, 384, 417
ApoI	RAATTY	1 cut(s)	148
AsiGI	ACCGGT	1 cut(s)	336
AspLEI	GCGC	3 cut(s)	37, 47, 431
AspS9I	GGNCC	4 cut(s)	15, 93, 361, 384
AsuC2I	CCSGG	1 cut(s)	96
AsuHPI	GGTGA	3 cut(s)	134, 694, 709
AvaII	GGWCC	2 cut(s)	15, 361
BarI	GAAGNNNNNNTAC	2 cut(s)	507, 539
Bbv12I	GWGCWC	2 cut(s)	178, 205
BccI	CCATC	1 cut(s)	503
BceAI	ACGGC	4 cut(s)	43, 255, 319, 371
BcgI	CGANNNNNNTGC	2 cut(s)	59, 93
BciT130I	CCWGG	3 cut(s)	261, 416, 448
BcnI	CCSGG	1 cut(s)	96
BcoDI	GTCTC	4 cut(s)	239, 481, 550, 731
BfaI	CTAG	1 cut(s)	560
BfmI	CTRYAG	2 cut(s)	585, 617
BfoI	RGCGCY	1 cut(s)	48
BfuAI	ACCTGC	1 cut(s)	463
BglII	AGATCT	1 cut(s)	189
BisI	GCNGC	2 cut(s)	155, 420
BlsI	GCNGC	2 cut(s)	156, 421
BmcAI	AGTACT	1 cut(s)	311
Bme1390I	CCNGG	4 cut(s)	96, 261, 416, 448
Bme18I	GGWCC	2 cut(s)	15, 361
BmgBI	CACGTC	1 cut(s)	442
BmgT120I	GGNCC	4 cut(s)	15, 93, 361, 384
BmiI	GGNNCC	3 cut(s)	144, 363, 714
BmrFI	CCNGG	4 cut(s)	96, 261, 416, 448
BmsI	GCATC	4 cut(s)	381, 384, 537, 586
BoxI	GACNNNNGTC	1 cut(s)	62
BplI	GAGNNNNNCTC	2 cut(s)	461, 493
BpuMI	CCSGG	1 cut(s)	96
BsaHI	GRCGYC	1 cut(s)	59
BsaI	GGTCTC	1 cut(s)	481
BsaJI	CCNNGG	1 cut(s)	447
BsaWI	WCCGGW	1 cut(s)	336
BsaXI	ACNNNNNCTCC	2 cut(s)	498, 528
Bsc4I	CCNNNNNNNGG	1 cut(s)	216
Bse118I	RCCGGY	1 cut(s)	336
Bse1I	ACTGG	3 cut(s)	198, 357, 441
BseBI	CCWGG	3 cut(s)	261, 416, 448
BseDI	CCNNGG	1 cut(s)	447
BseGI	GGATG	1 cut(s)	661
BseLI	CCNNNNNNNGG	1 cut(s)	216
BseMII	CTCAG	2 cut(s)	218, 620
BseNI	ACTGG	3 cut(s)	198, 357, 441
BseRI	GAGGAG	1 cut(s)	394
BseYI	CCCAGC	1 cut(s)	364
BsgI	GTGCAG	2 cut(s)	131, 653
Bsh1236I	CGCG	4 cut(s)	37, 377, 429, 467
Bsh1285I	CGRYCG	1 cut(s)	66
BshFI	GGCC	4 cut(s)	94, 197, 386, 419
BshTI	ACCGGT	1 cut(s)	336
BsiEI	CGRYCG	1 cut(s)	66
BsiHKAI	GWGCWC	2 cut(s)	178, 205
BsiSI	CCGG	3 cut(s)	96, 140, 337
BslI	CCNNNNNNNGG	1 cut(s)	216
BsmAI	GTCTC	4 cut(s)	239, 481, 550, 731
BsmI	GAATGC	2 cut(s)	108, 409
BsnI	GGCC	4 cut(s)	94, 197, 386, 419
Bso31I	GGTCTC	1 cut(s)	481
Bsp1286I	GDGCHC	2 cut(s)	178, 205
Bsp143I	GATC	2 cut(s)	189, 411
Bsp68I	TCGCGA	1 cut(s)	377
BspACI	CCGC	6 cut(s)	10, 37, 154, 324, 420, 467
BspANI	GGCC	4 cut(s)	94, 197, 386, 419
BspCNI	CTCAG	2 cut(s)	217, 619
BspFNI	CGCG	4 cut(s)	37, 377, 429, 467
BspHI	TCATGA	1 cut(s)	552
BspLI	GGNNCC	3 cut(s)	144, 363, 714
BspMAI	CTGCAG	2 cut(s)	589, 621
BspMI	ACCTGC	1 cut(s)	463
BspPI	GGATC	1 cut(s)	406
BspTNI	GGTCTC	1 cut(s)	481
BsrFI	RCCGGY	1 cut(s)	336
BsrI	ACTGG	3 cut(s)	198, 357, 441
BssAI	RCCGGY	1 cut(s)	336
BssECI	CCNNGG	1 cut(s)	447
BssMI	GATC	2 cut(s)	189, 411
BssNI	GRCGYC	1 cut(s)	59
Bst2UI	CCWGG	3 cut(s)	261, 416, 448
Bst4CI	ACNGT	1 cut(s)	53
Bst6I	CTCTTC	1 cut(s)	110
BstACI	GRCGYC	1 cut(s)	59
BstC8I	GCNNGC	3 cut(s)	266, 370, 465
BstDEI	CTNAG	2 cut(s)	204, 606
BstF5I	GGATG	1 cut(s)	661
BstFNI	CGCG	4 cut(s)	37, 377, 429, 467
BstH2I	RGCGCY	1 cut(s)	48
BstHHI	GCGC	3 cut(s)	37, 47, 431
BstKTI	GATC	2 cut(s)	192, 414
BstMAI	GTCTC	4 cut(s)	239, 481, 550, 731
BstMBI	GATC	2 cut(s)	189, 411
BstMCI	CGRYCG	1 cut(s)	66
BstMWI	GCNNNNNNNGC	6 cut(s)	173, 265, 374, 383, 428, 469
BstNI	CCWGG	3 cut(s)	261, 416, 448
BstNSI	RCATGY	1 cut(s)	322
BstPAI	GACNNNNGTC	1 cut(s)	62
BstSCI	CCNGG	4 cut(s)	94, 259, 414, 446
BstSFI	CTRYAG	2 cut(s)	585, 617
BstUI	CGCG	4 cut(s)	37, 377, 429, 467
BstX2I	RGATCY	2 cut(s)	189, 411
BstYI	RGATCY	2 cut(s)	189, 411
BsuRI	GGCC	4 cut(s)	94, 197, 386, 419
BtgZI	GCGATG	2 cut(s)	358, 410
BtrI	CACGTC	1 cut(s)	442
BtsCI	GGATG	1 cut(s)	661
BtsIMutI	CAGTG	1 cut(s)	205
BtuMI	TCGCGA	1 cut(s)	377
BveI	ACCTGC	1 cut(s)	463
Cac8I	GCNNGC	3 cut(s)	266, 370, 465
CaiI	CAGNNNCTG	1 cut(s)	274
CciI	TCATGA	1 cut(s)	552
CfoI	GCGC	3 cut(s)	37, 47, 431
Cfr10I	RCCGGY	1 cut(s)	336
Cfr13I	GGNCC	4 cut(s)	15, 93, 361, 384
CseI	GACGC	1 cut(s)	143
Csp6I	GTAC	5 cut(s)	54, 310, 350, 515, 659
CspAI	ACCGGT	1 cut(s)	336
CviAII	CATG	2 cut(s)	319, 553
CviQI	GTAC	5 cut(s)	54, 310, 350, 515, 659
DdeI	CTNAG	2 cut(s)	204, 606
DpnI	GATC	2 cut(s)	191, 413
DpnII	GATC	2 cut(s)	189, 411
EaeI	YGGCCR	1 cut(s)	195
Eam1104I	CTCTTC	1 cut(s)	110
EarI	CTCTTC	1 cut(s)	110
Eco31I	GGTCTC	1 cut(s)	481
Eco32I	GATATC	1 cut(s)	669
Eco47I	GGWCC	2 cut(s)	15, 361
Eco57I	CTGAAG	2 cut(s)	509, 683
EcoO109I	RGGNCCY	1 cut(s)	361
EcoRII	CCWGG	3 cut(s)	259, 414, 446
EcoRV	GATATC	1 cut(s)	669
FaeI	CATG	2 cut(s)	322, 556
FaiI	YATR	3 cut(s)	320, 434, 554
FatI	CATG	2 cut(s)	318, 552
FauI	CCCGC	1 cut(s)	30
FblI	GTMKAC	1 cut(s)	66
Fnu4HI	GCNGC	2 cut(s)	155, 420
FokI	GGATG	1 cut(s)	668
Fsp4HI	GCNGC	2 cut(s)	155, 420
FspBI	CTAG	1 cut(s)	560
GlaI	GCGC	3 cut(s)	36, 46, 430
GluI	GCNGC	2 cut(s)	155, 420
GsaI	CCCAGC	1 cut(s)	368
HaeII	RGCGCY	1 cut(s)	48
HaeIII	GGCC	4 cut(s)	94, 197, 386, 419
HapII	CCGG	3 cut(s)	96, 140, 337
HgaI	GACGC	1 cut(s)	143
HhaI	GCGC	3 cut(s)	37, 47, 431
Hin1I	GRCGYC	1 cut(s)	59
Hin1II	CATG	2 cut(s)	322, 556
Hin6I	GCGC	3 cut(s)	35, 45, 429
HinP1I	GCGC	3 cut(s)	35, 45, 429
HincII	GTYRAC	2 cut(s)	67, 457
HindII	GTYRAC	2 cut(s)	67, 457
HinfI	GANTC	3 cut(s)	327, 507, 613
HpaII	CCGG	3 cut(s)	96, 140, 337
HphI	GGTGA	3 cut(s)	134, 694, 709
Hpy166II	GTNNAC	3 cut(s)	67, 210, 457
Hpy188I	TCNGA	6 cut(s)	133, 147, 162, 284, 528, 609
Hpy188III	TCNNGA	3 cut(s)	376, 553, 653
Hpy8I	GTNNAC	3 cut(s)	67, 210, 457
Hpy99I	CGWCG	3 cut(s)	61, 64, 71
HpyAV	CCTTC	2 cut(s)	223, 584
HpyCH4III	ACNGT	1 cut(s)	53
HpyCH4IV	ACGT	2 cut(s)	59, 441
HpyCH4V	TGCA	7 cut(s)	23, 112, 482, 587, 619, 634, 677
HpyF10VI	GCNNNNNNNGC	6 cut(s)	173, 265, 374, 383, 428, 469
HpyF3I	CTNAG	2 cut(s)	204, 606
HpySE526I	ACGT	2 cut(s)	59, 441
Hsp92I	GRCGYC	1 cut(s)	59
Hsp92II	CATG	2 cut(s)	322, 556
HspAI	GCGC	3 cut(s)	35, 45, 429
Kzo9I	GATC	2 cut(s)	189, 411
LmnI	GCTCC	4 cut(s)	142, 148, 469, 712
LweI	GCATC	4 cut(s)	381, 384, 537, 586
MaeI	CTAG	1 cut(s)	560
MaeII	ACGT	2 cut(s)	59, 441
MaeIII	GTNAC	4 cut(s)	182, 252, 697, 721
MalI	GATC	2 cut(s)	191, 413
MboI	GATC	2 cut(s)	189, 411
MboII	GAAGA	4 cut(s)	127, 238, 622, 676
MfeI	CAATTG	1 cut(s)	483
MflI	RGATCY	2 cut(s)	189, 411
MhlI	GDGCHC	2 cut(s)	178, 205
MluCI	AATT	3 cut(s)	148, 483, 540
MlyI	GAGTC	2 cut(s)	336, 516
MspI	CCGG	3 cut(s)	96, 140, 337
MspR9I	CCNGG	4 cut(s)	96, 261, 416, 448
MunI	CAATTG	1 cut(s)	483
Mva1269I	GAATGC	2 cut(s)	108, 409
MvaI	CCWGG	3 cut(s)	261, 416, 448
MvnI	CGCG	4 cut(s)	37, 377, 429, 467
MwoI	GCNNNNNNNGC	6 cut(s)	173, 265, 374, 383, 428, 469
NciI	CCSGG	1 cut(s)	96
NdeII	GATC	2 cut(s)	189, 411
NlaIII	CATG	2 cut(s)	322, 556
NlaIV	GGNNCC	3 cut(s)	144, 363, 714
NmeAIII	GCCGAG	1 cut(s)	173
NmuCI	GTSAC	2 cut(s)	697, 721
NruI	TCGCGA	1 cut(s)	377
NspI	RCATGY	1 cut(s)	322
PagI	TCATGA	1 cut(s)	552
PciI	ACATGT	1 cut(s)	318
PctI	GAATGC	2 cut(s)	108, 409
PfeI	GAWTC	1 cut(s)	613
PinAI	ACCGGT	1 cut(s)	336
PkrI	GCNGC	2 cut(s)	156, 421
PleI	GAGTC	2 cut(s)	335, 515
PpsI	GAGTC	2 cut(s)	335, 515
PpuMI	RGGWCCY	1 cut(s)	361
PscI	ACATGT	1 cut(s)	318
PshAI	GACNNNNGTC	1 cut(s)	62
Psp5II	RGGWCCY	1 cut(s)	361
Psp6I	CCWGG	3 cut(s)	259, 414, 446
PspFI	CCCAGC	1 cut(s)	364
PspGI	CCWGG	3 cut(s)	259, 414, 446
PspN4I	GGNNCC	3 cut(s)	144, 363, 714
PspPI	GGNCC	4 cut(s)	15, 93, 361, 384
PspPPI	RGGWCCY	1 cut(s)	361
PstI	CTGCAG	2 cut(s)	589, 621
PstNI	CAGNNNCTG	1 cut(s)	274
PsuI	RGATCY	2 cut(s)	189, 411
RruI	TCGCGA	1 cut(s)	377
RsaI	GTAC	5 cut(s)	55, 311, 351, 516, 660
RsaNI	GTAC	5 cut(s)	54, 310, 350, 515, 659
SalI	GTCGAC	1 cut(s)	65
SatI	GCNGC	2 cut(s)	155, 420
Sau3AI	GATC	2 cut(s)	189, 411
Sau96I	GGNCC	4 cut(s)	15, 93, 361, 384
ScaI	AGTACT	1 cut(s)	311
SchI	GAGTC	2 cut(s)	336, 516
ScrFI	CCNGG	4 cut(s)	96, 261, 416, 448
SduI	GDGCHC	2 cut(s)	178, 205
SfaNI	GCATC	4 cut(s)	381, 384, 537, 586
SfcI	CTRYAG	2 cut(s)	585, 617
SinI	GGWCC	2 cut(s)	15, 361
Sse9I	AATT	3 cut(s)	148, 483, 540
SsiI	CCGC	6 cut(s)	10, 37, 154, 324, 420, 467
SspMI	CTAG	1 cut(s)	560
StyD4I	CCNGG	4 cut(s)	94, 259, 414, 446
TaaI	ACNGT	1 cut(s)	53
TaiI	ACGT	2 cut(s)	62, 444
TaqI	TCGA	2 cut(s)	66, 780
TaqII	GACCGA	1 cut(s)	52
TasI	AATT	3 cut(s)	148, 483, 540
TatI	WGTACW	2 cut(s)	309, 658
TauI	GCSGC	2 cut(s)	157, 422
TfiI	GAWTC	1 cut(s)	613
TscAI	CASTG	1 cut(s)	205
TseFI	GTSAC	2 cut(s)	697, 721
Tsp45I	GTSAC	2 cut(s)	697, 721
TspDTI	ATGAA	1 cut(s)	20
TspGWI	ACGGA	1 cut(s)	170
TspRI	CASTG	1 cut(s)	205
VpaK11BI	GGWCC	2 cut(s)	15, 361
XapI	RAATTY	1 cut(s)	148
XceI	RCATGY	1 cut(s)	322
XmiI	GTMKAC	1 cut(s)	66
XspI	CTAG	1 cut(s)	560
ZraI	GACGTC	1 cut(s)	60
ZrmI	AGTACT	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.