FvH4_3g10040

BES1 BZR1 homolog protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0017622
Physical Location & Seq
Reverse (-)
5840560 .. 5841445
886 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g10040.t1

Sequence Viewer

Length: 480 bp
ATGGCGGGAACCAGTGGAAGTGGGAGGAGTGAAAGTGAGAAAGAGAAGACGAAGATGAGGGAGAGGCAGAGAAGGGCCATCACCACTAAGATCTTCCATGGTTTGCGCAAACATGGTGGCTACAAACTCTCTCCTCGCGCCGACATCAATGAGGTCCTCCGCCATCTTGCTAACGACGCCGGCTGGCTTGTGGAACCTGATGGCACCACCTACCGCTCCAATGTAGTGAATTGCTGTCCGGCTTGTGGAATCTCCAAAGCAAGCATTGCCACAGCAATAGCAACACCGAGCAGCAGTGTGGTCATGGGTGGTGGTGAATGTTCGACCACAGCTTCGCCACTTCGACTCCCTGAATTTAACAGCAGTGGCAGTGGCACACACTCCATTTCACCCTTGCCCAACATGCCCGAAGGTGACCTAAACCAGCAGGAGGCCAGGGCATCCAACTACACCACTCCTGTTGCTTCACCTCGCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BES1_N

Protein Analysis

160

Amino Acids

16.86

Weight (kDa)

9.23

Isoelectric Point (pI)

64.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BES1_N PF05687 7 - 136 7.3e-34 BES1/BZR1 plant transcription factor, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017622)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10040
prunus_persica Prupe.4G089900_v2.0.a1
pyrus_communis pycom10g20920
rosa_chinensis RchiOBHm_Chr5g0015901
rosa_laevigata RLG00000032230
rosa_multiflora Rmu_sc0001878.1_g000013
rosa_roxburghii Rroxscaffold_1G00060690
rosa_rugosa Rorug05G0030100
rosa_samantha Rh5AG123700 Rh5CG134000 Rh5DG122000
rosa_wichuraiana Rw5G010680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 107
AccB1I GGYRCC 1 cut(s) 203
AccBSI CCGCTC 1 cut(s) 216
AccII CGCG 1 cut(s) 138
AciI CCGC 3 cut(s) 5, 160, 214
AcsI RAATTY 1 cut(s) 353
AcyI GRCGYC 1 cut(s) 177
AfiI CCNNNNNNNGG 2 cut(s) 245, 430
AjnI CCWGG 1 cut(s) 434
AluBI AGCT 1 cut(s) 332
AluI AGCT 1 cut(s) 332
AoxI GGCC 2 cut(s) 75, 432
ApeKI GCWGC 1 cut(s) 291
ApoI RAATTY 1 cut(s) 353
ArsI GACNNNNNNTTYG 2 cut(s) 316, 348
AspLEI GCGC 2 cut(s) 108, 140
AspS9I GGNCC 2 cut(s) 75, 154
AsuHPI GGTGA 5 cut(s) 73, 326, 381, 425, 459
AvaII GGWCC 1 cut(s) 154
BanI GGYRCC 1 cut(s) 203
BbsI GAAGAC 1 cut(s) 53
BbvI GCAGC 1 cut(s) 303
BccI CCATC 3 cut(s) 86, 171, 194
BciT130I CCWGG 1 cut(s) 436
BglII AGATCT 1 cut(s) 90
BisI GCNGC 1 cut(s) 292
BlsI GCNGC 1 cut(s) 293
Bme1390I CCNGG 1 cut(s) 436
Bme18I GGWCC 1 cut(s) 154
BmgT120I GGNCC 2 cut(s) 75, 154
BmiI GGNNCC 3 cut(s) 10, 195, 205
BmrFI CCNGG 1 cut(s) 436
BmsI GCATC 1 cut(s) 449
BpiI GAAGAC 1 cut(s) 53
BsaHI GRCGYC 1 cut(s) 177
BsaJI CCNNGG 2 cut(s) 97, 435
BsaXI ACNNNNNCTCC 4 cut(s) 19, 49, 330, 360
Bsc4I CCNNNNNNNGG 2 cut(s) 245, 430
Bse118I RCCGGY 1 cut(s) 179
Bse1I ACTGG 1 cut(s) 12
Bse3DI GCAATG 1 cut(s) 264
BseBI CCWGG 1 cut(s) 436
BseDI CCNNGG 2 cut(s) 97, 435
BseGI GGATG 1 cut(s) 440
BseLI CCNNNNNNNGG 2 cut(s) 245, 430
BseMI GCAATG 1 cut(s) 264
BseNI ACTGG 1 cut(s) 12
BseRI GAGGAG 2 cut(s) 40, 123
BseXI GCAGC 1 cut(s) 303
Bsh1236I CGCG 1 cut(s) 138
BshFI GGCC 2 cut(s) 77, 434
BshNI GGYRCC 1 cut(s) 203
BsiSI CCGG 2 cut(s) 180, 239
BslI CCNNNNNNNGG 2 cut(s) 245, 430
BsnI GGCC 2 cut(s) 77, 434
Bsp143I GATC 1 cut(s) 90
Bsp19I CCATGG 1 cut(s) 97
BspACI CCGC 3 cut(s) 5, 160, 214
BspANI GGCC 2 cut(s) 77, 434
BspFNI CGCG 1 cut(s) 138
BspLI GGNNCC 3 cut(s) 10, 195, 205
BspT107I GGYRCC 1 cut(s) 203
BsrBI CCGCTC 1 cut(s) 216
BsrDI GCAATG 1 cut(s) 264
BsrFI RCCGGY 1 cut(s) 179
BsrI ACTGG 1 cut(s) 12
BssAI RCCGGY 1 cut(s) 179
BssECI CCNNGG 2 cut(s) 97, 435
BssMI GATC 1 cut(s) 90
BssNI GRCGYC 1 cut(s) 177
BssT1I CCWWGG 1 cut(s) 97
Bst2UI CCWGG 1 cut(s) 436
BstACI GRCGYC 1 cut(s) 177
BstAPI GCANNNNNTGC 1 cut(s) 266
BstC8I GCNNGC 3 cut(s) 181, 185, 262
BstDEI CTNAG 1 cut(s) 87
BstDSI CCRYGG 1 cut(s) 97
BstEII GGTNACC 1 cut(s) 413
BstF5I GGATG 1 cut(s) 440
BstFNI CGCG 1 cut(s) 138
BstHHI GCGC 2 cut(s) 108, 140
BstKTI GATC 1 cut(s) 93
BstMBI GATC 1 cut(s) 90
BstMWI GCNNNNNNNGC 3 cut(s) 176, 266, 403
BstNI CCWGG 1 cut(s) 436
BstNSI RCATGY 1 cut(s) 406
BstPI GGTNACC 1 cut(s) 413
BstSCI CCNGG 1 cut(s) 434
BstUI CGCG 1 cut(s) 138
BstV1I GCAGC 1 cut(s) 303
BstV2I GAAGAC 1 cut(s) 53
BstX2I RGATCY 1 cut(s) 90
BstYI RGATCY 1 cut(s) 90
BsuRI GGCC 2 cut(s) 77, 434
BtgI CCRYGG 1 cut(s) 97
BtsCI GGATG 1 cut(s) 440
BtsI GCAGTG 3 cut(s) 301, 370, 376
BtsIMutI CAGTG 4 cut(s) 19, 301, 370, 376
Cac8I GCNNGC 3 cut(s) 181, 185, 262
CfoI GCGC 2 cut(s) 108, 140
Cfr10I RCCGGY 1 cut(s) 179
Cfr13I GGNCC 2 cut(s) 75, 154
CseI GACGC 1 cut(s) 185
CspCI CAANNNNNGTGG 4 cut(s) 97, 132, 442, 477
CviAII CATG 4 cut(s) 98, 113, 304, 403
CviJI RGCY 7 cut(s) 77, 120, 183, 187, 242, 332, 434
CviKI_1 RGCY 7 cut(s) 77, 120, 183, 187, 242, 332, 434
DdeI CTNAG 1 cut(s) 87
DpnI GATC 1 cut(s) 92
DpnII GATC 1 cut(s) 90
EciI GGCGGA 1 cut(s) 149
Eco130I CCWWGG 1 cut(s) 97
Eco47I GGWCC 1 cut(s) 154
Eco91I GGTNACC 1 cut(s) 413
EcoO109I RGGNCCY 1 cut(s) 154
EcoO65I GGTNACC 1 cut(s) 413
EcoRII CCWGG 1 cut(s) 434
EcoT14I CCWWGG 1 cut(s) 97
ErhI CCWWGG 1 cut(s) 97
FaeI CATG 4 cut(s) 101, 116, 307, 406
FaiI YATR 4 cut(s) 99, 114, 305, 404
FatI CATG 4 cut(s) 97, 112, 303, 402
Fnu4HI GCNGC 1 cut(s) 292
FokI GGATG 1 cut(s) 427
Fsp4HI GCNGC 1 cut(s) 292
FspI TGCGCA 1 cut(s) 107
GlaI GCGC 2 cut(s) 107, 139
GluI GCNGC 1 cut(s) 292
HaeIII GGCC 2 cut(s) 77, 434
HapII CCGG 2 cut(s) 180, 239
HgaI GACGC 1 cut(s) 185
HhaI GCGC 2 cut(s) 108, 140
Hin1I GRCGYC 1 cut(s) 177
Hin1II CATG 4 cut(s) 101, 116, 307, 406
Hin6I GCGC 2 cut(s) 106, 138
HinP1I GCGC 2 cut(s) 106, 138
HinfI GANTC 2 cut(s) 249, 345
HpaII CCGG 2 cut(s) 180, 239
HphI GGTGA 5 cut(s) 73, 326, 381, 425, 459
Hpy99I CGWCG 1 cut(s) 179
HpyAV CCTTC 2 cut(s) 66, 404
HpyF10VI GCNNNNNNNGC 3 cut(s) 176, 266, 403
HpyF3I CTNAG 1 cut(s) 87
Hsp92I GRCGYC 1 cut(s) 177
Hsp92II CATG 4 cut(s) 101, 116, 307, 406
HspAI GCGC 2 cut(s) 106, 138
KroI GCCGGC 1 cut(s) 179
KroNI GCCGGC 1 cut(s) 181
Kzo9I GATC 1 cut(s) 90
LmnI GCTCC 1 cut(s) 221
Lsp1109I GCAGC 1 cut(s) 303
LweI GCATC 1 cut(s) 449
MaeIII GTNAC 1 cut(s) 413
MalI GATC 1 cut(s) 92
MbiI CCGCTC 1 cut(s) 216
MboI GATC 1 cut(s) 90
MboII GAAGA 3 cut(s) 58, 64, 85
MflI RGATCY 1 cut(s) 90
MluCI AATT 2 cut(s) 229, 353
MlyI GAGTC 1 cut(s) 339
MmeI TCCRAC 1 cut(s) 468
MnlI CCTC 8 cut(s) 18, 51, 57, 144, 145, 167, 424, 480
MroNI GCCGGC 1 cut(s) 179
MseI TTAA 2 cut(s) 357, 478
MspI CCGG 2 cut(s) 180, 239
MspR9I CCNGG 1 cut(s) 436
MvaI CCWGG 1 cut(s) 436
MvnI CGCG 1 cut(s) 138
MwoI GCNNNNNNNGC 3 cut(s) 176, 266, 403
NaeI GCCGGC 1 cut(s) 181
NcoI CCATGG 1 cut(s) 97
NdeII GATC 1 cut(s) 90
NgoMIV GCCGGC 1 cut(s) 179
NlaIII CATG 4 cut(s) 101, 116, 307, 406
NlaIV GGNNCC 3 cut(s) 10, 195, 205
NmuCI GTSAC 1 cut(s) 413
NsbI TGCGCA 1 cut(s) 107
NspI RCATGY 1 cut(s) 406
PdiI GCCGGC 1 cut(s) 181
PfeI GAWTC 1 cut(s) 249
PkrI GCNGC 1 cut(s) 293
PleI GAGTC 1 cut(s) 339
PpsI GAGTC 1 cut(s) 339
PpuMI RGGWCCY 1 cut(s) 154
Psp5II RGGWCCY 1 cut(s) 154
Psp6I CCWGG 1 cut(s) 434
PspEI GGTNACC 1 cut(s) 413
PspGI CCWGG 1 cut(s) 434
PspN4I GGNNCC 3 cut(s) 10, 195, 205
PspPI GGNCC 2 cut(s) 75, 154
PspPPI RGGWCCY 1 cut(s) 154
PsuI RGATCY 1 cut(s) 90
SaqAI TTAA 2 cut(s) 357, 478
SatI GCNGC 1 cut(s) 292
Sau3AI GATC 1 cut(s) 90
Sau96I GGNCC 2 cut(s) 75, 154
SchI GAGTC 1 cut(s) 339
ScrFI CCNGG 1 cut(s) 436
SetI ASST 7 cut(s) 156, 199, 212, 334, 415, 420, 472
SfaNI GCATC 1 cut(s) 449
SinI GGWCC 1 cut(s) 154
Sse9I AATT 2 cut(s) 229, 353
SsiI CCGC 3 cut(s) 5, 160, 214
StyD4I CCNGG 1 cut(s) 434
StyI CCWWGG 1 cut(s) 97
TaqI TCGA 2 cut(s) 323, 343
TasI AATT 2 cut(s) 229, 353
TfiI GAWTC 1 cut(s) 249
Tru1I TTAA 2 cut(s) 357, 478
Tru9I TTAA 2 cut(s) 357, 478
TscAI CASTG 4 cut(s) 19, 301, 370, 376
TseFI GTSAC 1 cut(s) 413
TseI GCWGC 1 cut(s) 291
Tsp45I GTSAC 1 cut(s) 413
TspRI CASTG 4 cut(s) 19, 301, 370, 376
VpaK11BI GGWCC 1 cut(s) 154
XapI RAATTY 1 cut(s) 353
XceI RCATGY 1 cut(s) 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.