Rmu_sc0001878.1_g000013

BES1 BZR1 homolog protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001878.1
OG0017622
Physical Location & Seq
Forward (+)
65856 .. 66432
577 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001878.1_g000013.1.cds

Sequence Viewer

Length: 492 bp
atggcgggaaccagtgggagtgggaggagcgagagtgagaaagagaagacaaggatacgggagaggcagagaagggccatcaccactaaaattttccatggtttacgcaaacacggtggctacaaactccctcctcgcgctgacatcaatgaggtcctccgccatcttgctaaagaggccggttggctcgtggaacctgatggcaccacctaccgctctaataaggtactgaattgctgtccggcttgtgggatctccaaagcaagcactgccgcagcaatagcaacgccaacaccgagcagcagtctggtcatgggtggtggtgaatgttcgaccacagcttcgccactccgactccctgaatttaacagcagcagcagtggcacgcacttggactgcccattgtccctcatgtccgaaggtgagctacaccacctgccggaggtcagggcgtccaaccactccacacctgttgcttcacctcactcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BES1_N

Protein Analysis

163

Amino Acids

17.37

Weight (kDa)

9.12

Isoelectric Point (pI)

59.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017622)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10040
prunus_persica Prupe.4G089900_v2.0.a1
pyrus_communis pycom10g20920
rosa_chinensis RchiOBHm_Chr5g0015901
rosa_laevigata RLG00000032230
rosa_multiflora Rmu_sc0001878.1_g000013
rosa_roxburghii Rroxscaffold_1G00060690
rosa_rugosa Rorug05G0030100
rosa_samantha Rh5AG123700 Rh5CG134000 Rh5DG122000
rosa_wichuraiana Rw5G010680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 444
Acc36I ACCTGC 1 cut(s) 444
AccB1I GGYRCC 1 cut(s) 203
AccBSI CCGCTC 1 cut(s) 216
AccII CGCG 1 cut(s) 138
AciI CCGC 4 cut(s) 5, 160, 214, 273
AclWI GGATC 1 cut(s) 260
AcsI RAATTY 2 cut(s) 90, 362
AcyI GRCGYC 1 cut(s) 452
AfaI GTAC 1 cut(s) 228
AfiI CCNNNNNNNGG 3 cut(s) 248, 439, 442
AluBI AGCT 2 cut(s) 341, 427
AluI AGCT 2 cut(s) 341, 427
AlwI GGATC 1 cut(s) 260
AoxI GGCC 2 cut(s) 75, 177
ApeKI GCWGC 4 cut(s) 275, 300, 372, 375
ApoI RAATTY 2 cut(s) 90, 362
ArsI GACNNNNNNTTYG 2 cut(s) 325, 357
AspLEI GCGC 1 cut(s) 140
AspS9I GGNCC 2 cut(s) 75, 154
AsuHPI GGTGA 4 cut(s) 73, 335, 434, 471
AvaII GGWCC 1 cut(s) 154
BanI GGYRCC 1 cut(s) 203
BarI GAAGNNNNNNTAC 2 cut(s) 411, 443
BauI CACGAG 1 cut(s) 188
BbsI GAAGAC 1 cut(s) 53
BbvI GCAGC 4 cut(s) 287, 312, 384, 387
BccI CCATC 3 cut(s) 86, 171, 194
BciVI GTATCC 1 cut(s) 48
BfuAI ACCTGC 1 cut(s) 444
BfuI GTATCC 1 cut(s) 48
BisI GCNGC 5 cut(s) 273, 276, 301, 373, 376
BlsI GCNGC 5 cut(s) 274, 277, 302, 374, 377
Bme18I GGWCC 1 cut(s) 154
BmgT120I GGNCC 2 cut(s) 75, 154
BmiI GGNNCC 3 cut(s) 10, 195, 205
BpiI GAAGAC 1 cut(s) 53
BsaHI GRCGYC 1 cut(s) 452
BsaJI CCNNGG 1 cut(s) 97
BsaXI ACNNNNNCTCC 4 cut(s) 19, 49, 339, 369
Bsc4I CCNNNNNNNGG 3 cut(s) 248, 439, 442
Bse118I RCCGGY 1 cut(s) 179
Bse1I ACTGG 1 cut(s) 12
BseDI CCNNGG 1 cut(s) 97
BseLI CCNNNNNNNGG 3 cut(s) 248, 439, 442
BseNI ACTGG 1 cut(s) 12
BseRI GAGGAG 2 cut(s) 40, 123
BseXI GCAGC 4 cut(s) 287, 312, 384, 387
Bsh1236I CGCG 1 cut(s) 138
BshFI GGCC 2 cut(s) 77, 179
BshNI GGYRCC 1 cut(s) 203
BsiSI CCGG 3 cut(s) 180, 242, 440
BslFI GGGAC 1 cut(s) 391
BslI CCNNNNNNNGG 3 cut(s) 248, 439, 442
BsmFI GGGAC 1 cut(s) 391
BsnI GGCC 2 cut(s) 77, 179
Bsp143I GATC 1 cut(s) 252
Bsp19I CCATGG 1 cut(s) 97
BspACI CCGC 4 cut(s) 5, 160, 214, 273
BspANI GGCC 2 cut(s) 77, 179
BspFNI CGCG 1 cut(s) 138
BspLI GGNNCC 3 cut(s) 10, 195, 205
BspMI ACCTGC 1 cut(s) 444
BspPI GGATC 1 cut(s) 260
BspT107I GGYRCC 1 cut(s) 203
BsrBI CCGCTC 1 cut(s) 216
BsrFI RCCGGY 1 cut(s) 179
BsrI ACTGG 1 cut(s) 12
BssAI RCCGGY 1 cut(s) 179
BssECI CCNNGG 1 cut(s) 97
BssMI GATC 1 cut(s) 252
BssNI GRCGYC 1 cut(s) 452
BssSI CACGAG 1 cut(s) 188
BssT1I CCWWGG 1 cut(s) 97
Bst2BI CACGAG 1 cut(s) 188
Bst4CI ACNGT 1 cut(s) 116
BstACI GRCGYC 1 cut(s) 452
BstAPI GCANNNNNTGC 1 cut(s) 269
BstC8I GCNNGC 2 cut(s) 265, 386
BstDEI CTNAG 1 cut(s) 489
BstDSI CCRYGG 1 cut(s) 97
BstENI CCTNNNNNAGG 1 cut(s) 440
BstFNI CGCG 1 cut(s) 138
BstHHI GCGC 1 cut(s) 140
BstKTI GATC 1 cut(s) 255
BstMBI GATC 1 cut(s) 252
BstMWI GCNNNNNNNGC 4 cut(s) 176, 269, 281, 381
BstUI CGCG 1 cut(s) 138
BstV1I GCAGC 4 cut(s) 287, 312, 384, 387
BstV2I GAAGAC 1 cut(s) 53
BstX2I RGATCY 1 cut(s) 252
BstYI RGATCY 1 cut(s) 252
BsuI GTATCC 1 cut(s) 48
BsuRI GGCC 2 cut(s) 77, 179
BtgI CCRYGG 1 cut(s) 97
BtsI GCAGTG 2 cut(s) 267, 385
BtsIMutI CAGTG 3 cut(s) 19, 267, 385
BveI ACCTGC 1 cut(s) 444
Cac8I GCNNGC 2 cut(s) 265, 386
CfoI GCGC 1 cut(s) 140
Cfr10I RCCGGY 1 cut(s) 179
Cfr13I GGNCC 2 cut(s) 75, 154
CseI GACGC 1 cut(s) 441
Csp6I GTAC 1 cut(s) 227
CspCI CAANNNNNGTGG 4 cut(s) 97, 132, 454, 489
CviAII CATG 3 cut(s) 98, 313, 412
CviJI RGCY 7 cut(s) 77, 120, 179, 187, 245, 341, 427
CviKI_1 RGCY 7 cut(s) 77, 120, 179, 187, 245, 341, 427
CviQI GTAC 1 cut(s) 227
DdeI CTNAG 1 cut(s) 489
DpnI GATC 1 cut(s) 254
DpnII GATC 1 cut(s) 252
EciI GGCGGA 1 cut(s) 149
Eco130I CCWWGG 1 cut(s) 97
Eco47I GGWCC 1 cut(s) 154
EcoNI CCTNNNNNAGG 1 cut(s) 440
EcoO109I RGGNCCY 1 cut(s) 154
EcoT14I CCWWGG 1 cut(s) 97
ErhI CCWWGG 1 cut(s) 97
FaeI CATG 3 cut(s) 101, 316, 415
FaiI YATR 3 cut(s) 99, 314, 413
FaqI GGGAC 1 cut(s) 391
FatI CATG 3 cut(s) 97, 312, 411
Fnu4HI GCNGC 5 cut(s) 273, 276, 301, 373, 376
Fsp4HI GCNGC 5 cut(s) 273, 276, 301, 373, 376
GlaI GCGC 1 cut(s) 139
GluI GCNGC 5 cut(s) 273, 276, 301, 373, 376
HaeIII GGCC 2 cut(s) 77, 179
HapII CCGG 3 cut(s) 180, 242, 440
HgaI GACGC 1 cut(s) 441
HhaI GCGC 1 cut(s) 140
Hin1I GRCGYC 1 cut(s) 452
Hin1II CATG 3 cut(s) 101, 316, 415
Hin6I GCGC 1 cut(s) 138
HinP1I GCGC 1 cut(s) 138
HinfI GANTC 1 cut(s) 354
HpaII CCGG 3 cut(s) 180, 242, 440
HphI GGTGA 4 cut(s) 73, 335, 434, 471
Hpy166II GTNNAC 1 cut(s) 104
Hpy188I TCNGA 2 cut(s) 353, 418
Hpy8I GTNNAC 1 cut(s) 104
HpyAV CCTTC 2 cut(s) 66, 413
HpyCH4III ACNGT 1 cut(s) 116
HpyF10VI GCNNNNNNNGC 4 cut(s) 176, 269, 281, 381
HpyF3I CTNAG 1 cut(s) 489
Hsp92I GRCGYC 1 cut(s) 452
Hsp92II CATG 3 cut(s) 101, 316, 415
HspAI GCGC 1 cut(s) 138
Kzo9I GATC 1 cut(s) 252
LmnI GCTCC 1 cut(s) 27
Lsp1109I GCAGC 4 cut(s) 287, 312, 384, 387
MalI GATC 1 cut(s) 254
MbiI CCGCTC 1 cut(s) 216
MboI GATC 1 cut(s) 252
MboII GAAGA 1 cut(s) 58
MflI RGATCY 1 cut(s) 252
MluCI AATT 3 cut(s) 90, 232, 362
MlyI GAGTC 1 cut(s) 348
MmeI TCCRAC 2 cut(s) 376, 480
MseI TTAA 1 cut(s) 366
MspI CCGG 3 cut(s) 180, 242, 440
MvnI CGCG 1 cut(s) 138
MwoI GCNNNNNNNGC 4 cut(s) 176, 269, 281, 381
NcoI CCATGG 1 cut(s) 97
NdeII GATC 1 cut(s) 252
NlaIII CATG 3 cut(s) 101, 316, 415
NlaIV GGNNCC 3 cut(s) 10, 195, 205
PaqCI CACCTGC 1 cut(s) 444
PcsI WCGNNNNNNNCGW 1 cut(s) 293
PkrI GCNGC 5 cut(s) 274, 277, 302, 374, 377
PleI GAGTC 1 cut(s) 348
PpsI GAGTC 1 cut(s) 348
PpuMI RGGWCCY 1 cut(s) 154
Psp5II RGGWCCY 1 cut(s) 154
PspN4I GGNNCC 3 cut(s) 10, 195, 205
PspPI GGNCC 2 cut(s) 75, 154
PspPPI RGGWCCY 1 cut(s) 154
PsuI RGATCY 1 cut(s) 252
RsaI GTAC 1 cut(s) 228
RsaNI GTAC 1 cut(s) 227
SaqAI TTAA 1 cut(s) 366
SatI GCNGC 5 cut(s) 273, 276, 301, 373, 376
Sau3AI GATC 1 cut(s) 252
Sau96I GGNCC 2 cut(s) 75, 154
SchI GAGTC 1 cut(s) 348
SinI GGWCC 1 cut(s) 154
Sse9I AATT 3 cut(s) 90, 232, 362
SsiI CCGC 4 cut(s) 5, 160, 214, 273
StyI CCWWGG 1 cut(s) 97
TaaI ACNGT 1 cut(s) 116
TaqI TCGA 1 cut(s) 332
TasI AATT 3 cut(s) 90, 232, 362
TauI GCSGC 1 cut(s) 275
Tru1I TTAA 1 cut(s) 366
Tru9I TTAA 1 cut(s) 366
TscAI CASTG 3 cut(s) 19, 274, 385
TseI GCWGC 4 cut(s) 275, 300, 372, 375
TspRI CASTG 3 cut(s) 19, 274, 385
VpaK11BI GGWCC 1 cut(s) 154
XagI CCTNNNNNAGG 1 cut(s) 440
XapI RAATTY 2 cut(s) 90, 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.