Rroxscaffold_1G00060690

BES1 BZR1 homolog protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0017622
Physical Location & Seq
Forward (+)
82957074 .. 82958035
962 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00060690.1

Sequence Viewer

Length: 513 bp
ATGGCGGGAACCAGTGGGAGTGGGAGGAGCGAGAGTGAGAAAGAGAAGACAAGGATACGGGAGAGGCAGAGAAGGGCCATCACCACTAAAATCTTCCATGGTTTACGCAAACACGGTGGCTACAAACTCTCTCCTCGCGCTGACATCAATGAGGTCCTCCGCCATCTTGCTAAAGAGGCCGGCTGGCTCGTGGAACCTGATGGCACCACCTACCGCTCTAATAAGGTACTGAATTTCTGTCCGGCTTGTGGGATCTCCAAAGCAAGCACTACCGCAGGAATAGCAACGCCCACACCGAGTAGCAGTGTGGTCATGGCTGGTGGTGAATGTTCGACCACAGCTTCACCACTTCGACTCCCTGAATTTAACAGCAGCGGCAGTGGCACGCACTCCATCTGCCCATTGCCCCTCATGTCCGAAGGTGAGCTACACCACCTGCCGGAGTTACATCAGCTTGATGTCCACAAAAGTAAAGCTACTACAAGTTTGGATGCCACAACTGCCAGCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BES1_N

Protein Analysis

170

Amino Acids

18.18

Weight (kDa)

9.33

Isoelectric Point (pI)

53.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BES1_N PF05687 7 - 118 3.4e-33 BES1/BZR1 plant transcription factor, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017622)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10040
prunus_persica Prupe.4G089900_v2.0.a1
pyrus_communis pycom10g20920
rosa_chinensis RchiOBHm_Chr5g0015901
rosa_laevigata RLG00000032230
rosa_multiflora Rmu_sc0001878.1_g000013
rosa_roxburghii Rroxscaffold_1G00060690
rosa_rugosa Rorug05G0030100
rosa_samantha Rh5AG123700 Rh5CG134000 Rh5DG122000
rosa_wichuraiana Rw5G010680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 444
Acc36I ACCTGC 1 cut(s) 444
AccB1I GGYRCC 1 cut(s) 203
AccBSI CCGCTC 1 cut(s) 216
AccII CGCG 1 cut(s) 138
AciI CCGC 5 cut(s) 5, 160, 214, 273, 375
AclWI GGATC 1 cut(s) 260
AcsI RAATTY 2 cut(s) 232, 362
AfaI GTAC 1 cut(s) 228
AfiI CCNNNNNNNGG 2 cut(s) 248, 439
AluBI AGCT 4 cut(s) 341, 427, 454, 476
AluI AGCT 4 cut(s) 341, 427, 454, 476
AlwI GGATC 1 cut(s) 260
AoxI GGCC 2 cut(s) 75, 177
ApeKI GCWGC 1 cut(s) 372
ApoI RAATTY 2 cut(s) 232, 362
AspLEI GCGC 1 cut(s) 140
AspS9I GGNCC 2 cut(s) 75, 154
AsuHPI GGTGA 4 cut(s) 73, 335, 336, 434
AvaII GGWCC 1 cut(s) 154
BanI GGYRCC 1 cut(s) 203
BarI GAAGNNNNNNTAC 2 cut(s) 411, 443
BauI CACGAG 1 cut(s) 188
BbsI GAAGAC 1 cut(s) 53
BbvI GCAGC 1 cut(s) 384
BccI CCATC 4 cut(s) 86, 171, 194, 401
BciVI GTATCC 1 cut(s) 48
BfuAI ACCTGC 1 cut(s) 444
BfuI GTATCC 1 cut(s) 48
BisI GCNGC 2 cut(s) 373, 376
BlsI GCNGC 2 cut(s) 374, 377
Bme18I GGWCC 1 cut(s) 154
BmgT120I GGNCC 2 cut(s) 75, 154
BmiI GGNNCC 3 cut(s) 10, 195, 205
BmsI GCATC 1 cut(s) 481
BpiI GAAGAC 1 cut(s) 53
BsaJI CCNNGG 1 cut(s) 97
BsaXI ACNNNNNCTCC 4 cut(s) 19, 49, 339, 369
Bsc4I CCNNNNNNNGG 2 cut(s) 248, 439
Bse118I RCCGGY 1 cut(s) 179
Bse1I ACTGG 1 cut(s) 12
Bse3DI GCAATG 1 cut(s) 401
BseDI CCNNGG 1 cut(s) 97
BseGI GGATG 1 cut(s) 496
BseLI CCNNNNNNNGG 2 cut(s) 248, 439
BseMI GCAATG 1 cut(s) 401
BseNI ACTGG 1 cut(s) 12
BseRI GAGGAG 2 cut(s) 40, 123
BseXI GCAGC 1 cut(s) 384
Bsh1236I CGCG 1 cut(s) 138
BshFI GGCC 2 cut(s) 77, 179
BshNI GGYRCC 1 cut(s) 203
BsiSI CCGG 3 cut(s) 180, 242, 440
BslI CCNNNNNNNGG 2 cut(s) 248, 439
BsnI GGCC 2 cut(s) 77, 179
Bsp143I GATC 1 cut(s) 252
Bsp19I CCATGG 1 cut(s) 97
BspACI CCGC 5 cut(s) 5, 160, 214, 273, 375
BspANI GGCC 2 cut(s) 77, 179
BspFNI CGCG 1 cut(s) 138
BspLI GGNNCC 3 cut(s) 10, 195, 205
BspMI ACCTGC 1 cut(s) 444
BspPI GGATC 1 cut(s) 260
BspT107I GGYRCC 1 cut(s) 203
BsrBI CCGCTC 1 cut(s) 216
BsrDI GCAATG 1 cut(s) 401
BsrFI RCCGGY 1 cut(s) 179
BsrI ACTGG 1 cut(s) 12
BssAI RCCGGY 1 cut(s) 179
BssECI CCNNGG 1 cut(s) 97
BssMI GATC 1 cut(s) 252
BssSI CACGAG 1 cut(s) 188
BssT1I CCWWGG 1 cut(s) 97
Bst2BI CACGAG 1 cut(s) 188
Bst4CI ACNGT 1 cut(s) 116
BstC8I GCNNGC 5 cut(s) 181, 185, 265, 386, 505
BstDSI CCRYGG 1 cut(s) 97
BstF5I GGATG 1 cut(s) 496
BstFNI CGCG 1 cut(s) 138
BstHHI GCGC 1 cut(s) 140
BstKTI GATC 1 cut(s) 255
BstMBI GATC 1 cut(s) 252
BstMWI GCNNNNNNNGC 4 cut(s) 176, 281, 381, 500
BstUI CGCG 1 cut(s) 138
BstV1I GCAGC 1 cut(s) 384
BstV2I GAAGAC 1 cut(s) 53
BstX2I RGATCY 1 cut(s) 252
BstYI RGATCY 1 cut(s) 252
BsuI GTATCC 1 cut(s) 48
BsuRI GGCC 2 cut(s) 77, 179
BtgI CCRYGG 1 cut(s) 97
BtsCI GGATG 1 cut(s) 496
BtsI GCAGTG 2 cut(s) 310, 385
BtsIMutI CAGTG 3 cut(s) 19, 310, 385
BveI ACCTGC 1 cut(s) 444
Cac8I GCNNGC 5 cut(s) 181, 185, 265, 386, 505
CfoI GCGC 1 cut(s) 140
Cfr10I RCCGGY 1 cut(s) 179
Cfr13I GGNCC 2 cut(s) 75, 154
Csp6I GTAC 1 cut(s) 227
CspCI CAANNNNNGTGG 2 cut(s) 97, 132
CviAII CATG 3 cut(s) 98, 313, 412
CviQI GTAC 1 cut(s) 227
DpnI GATC 1 cut(s) 254
DpnII GATC 1 cut(s) 252
EciI GGCGGA 1 cut(s) 149
Eco130I CCWWGG 1 cut(s) 97
Eco47I GGWCC 1 cut(s) 154
EcoO109I RGGNCCY 1 cut(s) 154
EcoT14I CCWWGG 1 cut(s) 97
ErhI CCWWGG 1 cut(s) 97
FaeI CATG 3 cut(s) 101, 316, 415
FaiI YATR 3 cut(s) 99, 314, 413
FatI CATG 3 cut(s) 97, 312, 411
Fnu4HI GCNGC 2 cut(s) 373, 376
FokI GGATG 1 cut(s) 503
Fsp4HI GCNGC 2 cut(s) 373, 376
GlaI GCGC 1 cut(s) 139
GluI GCNGC 2 cut(s) 373, 376
HaeIII GGCC 2 cut(s) 77, 179
HapII CCGG 3 cut(s) 180, 242, 440
HhaI GCGC 1 cut(s) 140
Hin1II CATG 3 cut(s) 101, 316, 415
Hin6I GCGC 1 cut(s) 138
HinP1I GCGC 1 cut(s) 138
HinfI GANTC 1 cut(s) 354
HpaII CCGG 3 cut(s) 180, 242, 440
HphI GGTGA 4 cut(s) 73, 335, 336, 434
Hpy166II GTNNAC 2 cut(s) 104, 463
Hpy188I TCNGA 1 cut(s) 418
Hpy8I GTNNAC 2 cut(s) 104, 463
HpyAV CCTTC 2 cut(s) 66, 413
HpyCH4III ACNGT 1 cut(s) 116
HpyF10VI GCNNNNNNNGC 4 cut(s) 176, 281, 381, 500
Hsp92II CATG 3 cut(s) 101, 316, 415
HspAI GCGC 1 cut(s) 138
KroI GCCGGC 1 cut(s) 179
KroNI GCCGGC 1 cut(s) 181
Kzo9I GATC 1 cut(s) 252
LmnI GCTCC 1 cut(s) 27
Lsp1109I GCAGC 1 cut(s) 384
LweI GCATC 1 cut(s) 481
MaeIII GTNAC 1 cut(s) 444
MalI GATC 1 cut(s) 254
MbiI CCGCTC 1 cut(s) 216
MboI GATC 1 cut(s) 252
MboII GAAGA 2 cut(s) 58, 85
MflI RGATCY 1 cut(s) 252
MluCI AATT 2 cut(s) 232, 362
MlyI GAGTC 1 cut(s) 348
MnlI CCTC 7 cut(s) 18, 57, 144, 145, 167, 169, 419
MroNI GCCGGC 1 cut(s) 179
MseI TTAA 1 cut(s) 366
MspA1I CMGCKG 1 cut(s) 375
MspI CCGG 3 cut(s) 180, 242, 440
MvnI CGCG 1 cut(s) 138
MwoI GCNNNNNNNGC 4 cut(s) 176, 281, 381, 500
NaeI GCCGGC 1 cut(s) 181
NcoI CCATGG 1 cut(s) 97
NdeII GATC 1 cut(s) 252
NgoMIV GCCGGC 1 cut(s) 179
NlaIII CATG 3 cut(s) 101, 316, 415
NlaIV GGNNCC 3 cut(s) 10, 195, 205
PaqCI CACCTGC 1 cut(s) 444
PcsI WCGNNNNNNNCGW 1 cut(s) 293
PdiI GCCGGC 1 cut(s) 181
PkrI GCNGC 2 cut(s) 374, 377
PleI GAGTC 1 cut(s) 348
PpsI GAGTC 1 cut(s) 348
PpuMI RGGWCCY 1 cut(s) 154
Psp5II RGGWCCY 1 cut(s) 154
PspN4I GGNNCC 3 cut(s) 10, 195, 205
PspPI GGNCC 2 cut(s) 75, 154
PspPPI RGGWCCY 1 cut(s) 154
PsuI RGATCY 1 cut(s) 252
RsaI GTAC 1 cut(s) 228
RsaNI GTAC 1 cut(s) 227
SaqAI TTAA 1 cut(s) 366
SatI GCNGC 2 cut(s) 373, 376
Sau3AI GATC 1 cut(s) 252
Sau96I GGNCC 2 cut(s) 75, 154
SchI GAGTC 1 cut(s) 348
SfaNI GCATC 1 cut(s) 481
SinI GGWCC 1 cut(s) 154
Sse9I AATT 2 cut(s) 232, 362
SsiI CCGC 5 cut(s) 5, 160, 214, 273, 375
StyI CCWWGG 1 cut(s) 97
TaaI ACNGT 1 cut(s) 116
TaqI TCGA 2 cut(s) 332, 352
TasI AATT 2 cut(s) 232, 362
TauI GCSGC 1 cut(s) 378
Tru1I TTAA 1 cut(s) 366
Tru9I TTAA 1 cut(s) 366
TscAI CASTG 3 cut(s) 19, 310, 385
TseI GCWGC 1 cut(s) 372
TspRI CASTG 3 cut(s) 19, 310, 385
VpaK11BI GGWCC 1 cut(s) 154
XapI RAATTY 2 cut(s) 232, 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.