Prupe.4G089900_v2.0.a1

BES1 BZR1 homolog protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0017622
Physical Location & Seq
Reverse (-)
4472901 .. 4473536
636 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G089900.1

Sequence Viewer

Length: 636 bp
ATGGCGGGAACACATGGGAGGAGCGAGAGCGAGAAAGAGAAGACAAAGATGAGGGAGAGGCAGAGGAGGGCCATCACAACCAAAATCTTCCACGGCCTCCGCAAGCACGGCGGCTACGGTCTCTCCCCCCGCGCCGACATCAACGAGGTCCTCCGCCATCTCGCCTCCGAGGCCGGCTGGCTCGTCGAACCTGACGGCACCACCTACCGCCGCCGCTCCCCCAATGTACGCACGCCACCTCCCTCTGTCCTTTCCTTTTCTTTCCTGCATTTTCTCACCAACCAAACACACATTTTGTTTTATTCTATTCACTTGGTTGTTGTTTGTGGAGGGAAGGTTTCGAATTGCTGTTCGGTCTGCGGCGGGGTCCCCAAAGCCAGCGCCAAGTCGGCAGCAGCAGCAGCAACGCCGAGCAGTAGCATGGTGATGGGCGGCTGTGAGAGTTCGACCACAGCCTCTCCAACTTCAAGCAGTCTGCCTGCCTTCAACAATAACAACACCAGCGACACCACAGCCACCAACAACAACAGTGTGAGCGTTTACTCGGCTATGTACGTGTACGAAGGTGGGCTCCACAACCACCAGCTGCATGAAGCCAGGGCTTCCAACAACACCTCCCCCTCCCACTGCCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BES1_N

Protein Analysis

212

Amino Acids

22.65

Weight (kDa)

9.38

Isoelectric Point (pI)

54.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017622)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10040
prunus_persica Prupe.4G089900_v2.0.a1
pyrus_communis pycom10g20920
rosa_chinensis RchiOBHm_Chr5g0015901
rosa_laevigata RLG00000032230
rosa_multiflora Rmu_sc0001878.1_g000013
rosa_roxburghii Rroxscaffold_1G00060690
rosa_rugosa Rorug05G0030100
rosa_samantha Rh5AG123700 Rh5CG134000 Rh5DG122000
rosa_wichuraiana Rw5G010680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 197
AccBSI CCGCTC 1 cut(s) 216
AccII CGCG 1 cut(s) 132
AfaI GTAC 3 cut(s) 228, 554, 560
AflIII ACRYGT 1 cut(s) 555
AgsI TTSAA 2 cut(s) 468, 487
AjnI CCWGG 1 cut(s) 596
AluBI AGCT 1 cut(s) 586
AluI AGCT 1 cut(s) 586
Alw26I GTCTC 1 cut(s) 125
AoxI GGCC 3 cut(s) 69, 94, 171
ApeKI GCWGC 5 cut(s) 392, 395, 398, 401, 586
AspLEI GCGC 2 cut(s) 134, 383
AspS9I GGNCC 3 cut(s) 69, 148, 367
AsuHPI GGTGA 2 cut(s) 268, 436
AsuII TTCGAA 1 cut(s) 341
AvaII GGWCC 2 cut(s) 148, 367
BanI GGYRCC 1 cut(s) 197
BanII GRGCYC 1 cut(s) 573
BbsI GAAGAC 1 cut(s) 47
BbvI GCAGC 5 cut(s) 404, 407, 410, 413, 573
BccI CCATC 3 cut(s) 80, 165, 421
BceAI ACGGC 3 cut(s) 109, 124, 211
BciT130I CCWGG 1 cut(s) 598
BcoDI GTCTC 1 cut(s) 125
BfoI RGCGCY 1 cut(s) 384
BglI GCCNNNNNGGC 2 cut(s) 170, 389
Bme1390I CCNGG 1 cut(s) 598
Bme18I GGWCC 2 cut(s) 148, 367
BmgT120I GGNCC 3 cut(s) 69, 148, 367
BmiI GGNNCC 4 cut(s) 199, 368, 369, 572
BmrFI CCNGG 1 cut(s) 598
BpiI GAAGAC 1 cut(s) 47
Bpu14I TTCGAA 1 cut(s) 341
BsaAI YACGTR 1 cut(s) 556
BsaI GGTCTC 1 cut(s) 125
BsaJI CCNNGG 3 cut(s) 91, 168, 597
Bse118I RCCGGY 1 cut(s) 173
BseBI CCWGG 1 cut(s) 598
BseDI CCNNGG 3 cut(s) 91, 168, 597
BseRI GAGGAG 2 cut(s) 34, 79
BseXI GCAGC 5 cut(s) 404, 407, 410, 413, 573
Bsh1236I CGCG 1 cut(s) 132
BshFI GGCC 3 cut(s) 71, 96, 173
BshNI GGYRCC 1 cut(s) 197
BsiSI CCGG 1 cut(s) 174
BslFI GGGAC 1 cut(s) 353
BsmAI GTCTC 1 cut(s) 125
BsmFI GGGAC 1 cut(s) 353
BsnI GGCC 3 cut(s) 71, 96, 173
Bso31I GGTCTC 1 cut(s) 125
Bsp119I TTCGAA 1 cut(s) 341
Bsp1286I GDGCHC 1 cut(s) 573
BspANI GGCC 3 cut(s) 71, 96, 173
BspFNI CGCG 1 cut(s) 132
BspLI GGNNCC 4 cut(s) 199, 368, 369, 572
BspT104I TTCGAA 1 cut(s) 341
BspT107I GGYRCC 1 cut(s) 197
BspTNI GGTCTC 1 cut(s) 125
BsrBI CCGCTC 1 cut(s) 216
BsrFI RCCGGY 1 cut(s) 173
BssAI RCCGGY 1 cut(s) 173
BssECI CCNNGG 3 cut(s) 91, 168, 597
Bst2UI CCWGG 1 cut(s) 598
Bst4CI ACNGT 2 cut(s) 119, 530
BstBAI YACGTR 1 cut(s) 556
BstBI TTCGAA 1 cut(s) 341
BstC8I GCNNGC 6 cut(s) 104, 175, 179, 233, 379, 480
BstDEI CTNAG 1 cut(s) 633
BstDSI CCRYGG 1 cut(s) 91
BstFNI CGCG 1 cut(s) 132
BstH2I RGCGCY 1 cut(s) 384
BstHHI GCGC 2 cut(s) 134, 383
BstMAI GTCTC 1 cut(s) 125
BstMWI GCNNNNNNNGC 5 cut(s) 108, 170, 389, 398, 401
BstNI CCWGG 1 cut(s) 598
BstSCI CCNGG 1 cut(s) 596
BstUI CGCG 1 cut(s) 132
BstV1I GCAGC 5 cut(s) 404, 407, 410, 413, 573
BstV2I GAAGAC 1 cut(s) 47
BsuRI GGCC 3 cut(s) 71, 96, 173
BtgI CCRYGG 1 cut(s) 91
BtsI GCAGTG 1 cut(s) 625
BtsIMutI CAGTG 2 cut(s) 535, 625
Cac8I GCNNGC 6 cut(s) 104, 175, 179, 233, 379, 480
CfoI GCGC 2 cut(s) 134, 383
Cfr10I RCCGGY 1 cut(s) 173
Cfr13I GGNCC 3 cut(s) 69, 148, 367
Csp6I GTAC 3 cut(s) 227, 553, 559
CviAII CATG 3 cut(s) 14, 421, 590
CviQI GTAC 3 cut(s) 227, 553, 559
DdeI CTNAG 1 cut(s) 633
EciI GGCGGA 1 cut(s) 143
Eco24I GRGCYC 1 cut(s) 573
Eco31I GGTCTC 1 cut(s) 125
Eco47I GGWCC 2 cut(s) 148, 367
EcoO109I RGGNCCY 2 cut(s) 148, 367
EcoRII CCWGG 1 cut(s) 596
EcoT38I GRGCYC 1 cut(s) 573
FaeI CATG 3 cut(s) 17, 424, 593
FaiI YATR 4 cut(s) 15, 422, 551, 591
FaqI GGGAC 1 cut(s) 353
FatI CATG 3 cut(s) 13, 420, 589
FauI CCCGC 2 cut(s) 137, 356
FriOI GRGCYC 1 cut(s) 573
GlaI GCGC 2 cut(s) 133, 382
HaeII RGCGCY 1 cut(s) 384
HaeIII GGCC 3 cut(s) 71, 96, 173
HapII CCGG 1 cut(s) 174
HhaI GCGC 2 cut(s) 134, 383
Hin1II CATG 3 cut(s) 17, 424, 593
Hin6I GCGC 2 cut(s) 132, 381
HinP1I GCGC 2 cut(s) 132, 381
HpaII CCGG 1 cut(s) 174
HphI GGTGA 2 cut(s) 268, 436
Hpy166II GTNNAC 2 cut(s) 541, 559
Hpy188I TCNGA 1 cut(s) 169
Hpy8I GTNNAC 2 cut(s) 541, 559
Hpy99I CGWCG 1 cut(s) 188
HpyAV CCTTC 3 cut(s) 328, 493, 557
HpyCH4III ACNGT 2 cut(s) 119, 530
HpyCH4IV ACGT 1 cut(s) 555
HpyCH4V TGCA 2 cut(s) 268, 589
HpyF10VI GCNNNNNNNGC 5 cut(s) 108, 170, 389, 398, 401
HpyF3I CTNAG 1 cut(s) 633
HpySE526I ACGT 1 cut(s) 555
Hsp92II CATG 3 cut(s) 17, 424, 593
HspAI GCGC 2 cut(s) 132, 381
KflI GGGWCCC 1 cut(s) 367
KroI GCCGGC 1 cut(s) 173
KroNI GCCGGC 1 cut(s) 175
LmnI GCTCC 3 cut(s) 21, 221, 576
Lsp1109I GCAGC 5 cut(s) 404, 407, 410, 413, 573
MaeII ACGT 1 cut(s) 555
MbiI CCGCTC 1 cut(s) 216
MboII GAAGA 2 cut(s) 52, 79
MhlI GDGCHC 1 cut(s) 573
MluCI AATT 1 cut(s) 343
MmeI TCCRAC 2 cut(s) 485, 630
MroNI GCCGGC 1 cut(s) 173
MslI CAYNNNNRTG 1 cut(s) 425
MspA1I CMGCKG 1 cut(s) 586
MspI CCGG 1 cut(s) 174
MspR9I CCNGG 1 cut(s) 598
MvaI CCWGG 1 cut(s) 598
MvnI CGCG 1 cut(s) 132
MwoI GCNNNNNNNGC 5 cut(s) 108, 170, 389, 398, 401
NaeI GCCGGC 1 cut(s) 175
NgoMIV GCCGGC 1 cut(s) 173
NlaIII CATG 3 cut(s) 17, 424, 593
NlaIV GGNNCC 4 cut(s) 199, 368, 369, 572
NmeAIII GCCGAG 2 cut(s) 435, 524
NspV TTCGAA 1 cut(s) 341
PdiI GCCGGC 1 cut(s) 175
Ppu21I YACGTR 1 cut(s) 556
PpuMI RGGWCCY 2 cut(s) 148, 367
Psp5II RGGWCCY 2 cut(s) 148, 367
Psp6I CCWGG 1 cut(s) 596
PspGI CCWGG 1 cut(s) 596
PspN4I GGNNCC 4 cut(s) 199, 368, 369, 572
PspPI GGNCC 3 cut(s) 69, 148, 367
PspPPI RGGWCCY 2 cut(s) 148, 367
PvuII CAGCTG 1 cut(s) 586
RsaI GTAC 3 cut(s) 228, 554, 560
RsaNI GTAC 3 cut(s) 227, 553, 559
RseI CAYNNNNRTG 1 cut(s) 425
Sau96I GGNCC 3 cut(s) 69, 148, 367
ScrFI CCNGG 1 cut(s) 598
SduI GDGCHC 1 cut(s) 573
SetI ASST 9 cut(s) 150, 193, 206, 241, 339, 558, 568, 588, 617
SfuI TTCGAA 1 cut(s) 341
SinI GGWCC 2 cut(s) 148, 367
SmiMI CAYNNNNRTG 1 cut(s) 425
Sse9I AATT 1 cut(s) 343
StyD4I CCNGG 1 cut(s) 596
TaaI ACNGT 2 cut(s) 119, 530
TaiI ACGT 1 cut(s) 558
TaqI TCGA 3 cut(s) 186, 341, 446
TaqII GACCGA 1 cut(s) 343
TasI AATT 1 cut(s) 343
TauI GCSGC 5 cut(s) 114, 213, 216, 363, 435
TscAI CASTG 2 cut(s) 535, 632
TseI GCWGC 5 cut(s) 392, 395, 398, 401, 586
TspDTI ATGAA 1 cut(s) 606
TspRI CASTG 2 cut(s) 535, 632
VpaK11BI GGWCC 2 cut(s) 148, 367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.