RchiOBHm_Chr5g0015901

BES1 BZR1 homolog protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0017622
Physical Location & Seq
Reverse (-)
11000965 .. 11001817
853 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29632

Sequence Viewer

Length: 492 bp
ATGGCGGGAACCAGTGGGAGTGGGAGGAGCGAGAGTGAGAAAGAGAAGACAAGGATACGGGAGAGGCATAGAAGGGCCATCACCACTAAAATCTTCCATGGTTTACGCAAACACGGTGGCTACAAACTCCCTCCTCGCGCTGACATCAATGAGGTCCTCCGCCATCTTGCTAAAGAGGCCGGCTGGCGCGTGGAACCTGATGGCACCACCTACCGCTCTAATAAGGTACTGGATTTCTGTCCGGCTTGTGGGATCTCCAAAGCAAGCACTGCCACAGCAATAGCAACGCCAACACCGAGCAGCAGTGTGGTCATGGCTGGTGGTGAATGTTCGACCACAGCTTCGCCATATCGACTCCCTGAATTTAACAGCAGCGGCAGTGGCACGCACTCCATCTGCCCATTGTCCCTCATGTCCGAAGGTGAGCTACACCACCTGCCAGAGGTCAGGGCGTCCGACCACTCCACACCTGTTGCTTCACCTCACTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BES1_N

Protein Analysis

163

Amino Acids

17.49

Weight (kDa)

9.21

Isoelectric Point (pI)

54.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BES1_N PF05687 7 - 118 9.1e-35 BES1/BZR1 plant transcription factor, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017622)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10040
prunus_persica Prupe.4G089900_v2.0.a1
pyrus_communis pycom10g20920
rosa_chinensis RchiOBHm_Chr5g0015901
rosa_laevigata RLG00000032230
rosa_multiflora Rmu_sc0001878.1_g000013
rosa_roxburghii Rroxscaffold_1G00060690
rosa_rugosa Rorug05G0030100
rosa_samantha Rh5AG123700 Rh5CG134000 Rh5DG122000
rosa_wichuraiana Rw5G010680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 444
Acc36I ACCTGC 1 cut(s) 444
AccB1I GGYRCC 1 cut(s) 203
AccBSI CCGCTC 1 cut(s) 216
AccII CGCG 2 cut(s) 138, 189
AciI CCGC 4 cut(s) 5, 160, 214, 375
AclWI GGATC 1 cut(s) 260
AcsI RAATTY 1 cut(s) 362
AcyI GRCGYC 1 cut(s) 452
AfaI GTAC 1 cut(s) 228
AfiI CCNNNNNNNGG 2 cut(s) 248, 442
AluBI AGCT 2 cut(s) 341, 427
AluI AGCT 2 cut(s) 341, 427
AlwI GGATC 1 cut(s) 260
AoxI GGCC 2 cut(s) 75, 177
ApeKI GCWGC 2 cut(s) 300, 372
ApoI RAATTY 1 cut(s) 362
ArsI GACNNNNNNTTYG 2 cut(s) 325, 357
AspLEI GCGC 2 cut(s) 140, 189
AspS9I GGNCC 2 cut(s) 75, 154
AsuHPI GGTGA 4 cut(s) 73, 335, 434, 471
AvaII GGWCC 1 cut(s) 154
BanI GGYRCC 1 cut(s) 203
BarI GAAGNNNNNNTAC 2 cut(s) 411, 443
BbsI GAAGAC 1 cut(s) 53
BbvI GCAGC 2 cut(s) 312, 384
BccI CCATC 4 cut(s) 86, 171, 194, 401
BciVI GTATCC 1 cut(s) 48
BfuAI ACCTGC 1 cut(s) 444
BfuI GTATCC 1 cut(s) 48
BisI GCNGC 3 cut(s) 301, 373, 376
BlsI GCNGC 3 cut(s) 302, 374, 377
Bme18I GGWCC 1 cut(s) 154
BmgT120I GGNCC 2 cut(s) 75, 154
BmiI GGNNCC 3 cut(s) 10, 195, 205
BpiI GAAGAC 1 cut(s) 53
BsaHI GRCGYC 1 cut(s) 452
BsaJI CCNNGG 1 cut(s) 97
BsaXI ACNNNNNCTCC 2 cut(s) 19, 49
Bsc4I CCNNNNNNNGG 2 cut(s) 248, 442
Bse118I RCCGGY 1 cut(s) 179
Bse1I ACTGG 2 cut(s) 12, 234
BseDI CCNNGG 1 cut(s) 97
BseLI CCNNNNNNNGG 2 cut(s) 248, 442
BseNI ACTGG 2 cut(s) 12, 234
BseRI GAGGAG 2 cut(s) 40, 123
BseXI GCAGC 2 cut(s) 312, 384
Bsh1236I CGCG 2 cut(s) 138, 189
BshFI GGCC 2 cut(s) 77, 179
BshNI GGYRCC 1 cut(s) 203
BsiSI CCGG 2 cut(s) 180, 242
BslFI GGGAC 1 cut(s) 391
BslI CCNNNNNNNGG 2 cut(s) 248, 442
BsmFI GGGAC 1 cut(s) 391
BsnI GGCC 2 cut(s) 77, 179
Bsp143I GATC 1 cut(s) 252
Bsp19I CCATGG 1 cut(s) 97
BspACI CCGC 4 cut(s) 5, 160, 214, 375
BspANI GGCC 2 cut(s) 77, 179
BspFNI CGCG 2 cut(s) 138, 189
BspLI GGNNCC 3 cut(s) 10, 195, 205
BspMI ACCTGC 1 cut(s) 444
BspPI GGATC 1 cut(s) 260
BspT107I GGYRCC 1 cut(s) 203
BsrBI CCGCTC 1 cut(s) 216
BsrFI RCCGGY 1 cut(s) 179
BsrI ACTGG 2 cut(s) 12, 234
BssAI RCCGGY 1 cut(s) 179
BssECI CCNNGG 1 cut(s) 97
BssMI GATC 1 cut(s) 252
BssNI GRCGYC 1 cut(s) 452
BssT1I CCWWGG 1 cut(s) 97
Bst4CI ACNGT 1 cut(s) 116
BstACI GRCGYC 1 cut(s) 452
BstAPI GCANNNNNTGC 1 cut(s) 269
BstC8I GCNNGC 4 cut(s) 181, 185, 265, 386
BstDEI CTNAG 1 cut(s) 489
BstDSI CCRYGG 1 cut(s) 97
BstENI CCTNNNNNAGG 1 cut(s) 440
BstFNI CGCG 2 cut(s) 138, 189
BstHHI GCGC 2 cut(s) 140, 189
BstKTI GATC 1 cut(s) 255
BstMBI GATC 1 cut(s) 252
BstMWI GCNNNNNNNGC 3 cut(s) 176, 269, 381
BstUI CGCG 2 cut(s) 138, 189
BstV1I GCAGC 2 cut(s) 312, 384
BstV2I GAAGAC 1 cut(s) 53
BstX2I RGATCY 1 cut(s) 252
BstYI RGATCY 1 cut(s) 252
BsuI GTATCC 1 cut(s) 48
BsuRI GGCC 2 cut(s) 77, 179
BtgI CCRYGG 1 cut(s) 97
BtsI GCAGTG 3 cut(s) 267, 310, 385
BtsIMutI CAGTG 4 cut(s) 19, 267, 310, 385
BveI ACCTGC 1 cut(s) 444
Cac8I GCNNGC 4 cut(s) 181, 185, 265, 386
CfoI GCGC 2 cut(s) 140, 189
Cfr10I RCCGGY 1 cut(s) 179
Cfr13I GGNCC 2 cut(s) 75, 154
CseI GACGC 1 cut(s) 441
Csp6I GTAC 1 cut(s) 227
CspCI CAANNNNNGTGG 4 cut(s) 97, 132, 454, 489
CviAII CATG 3 cut(s) 98, 313, 412
CviJI RGCY 8 cut(s) 77, 120, 179, 183, 245, 317, 341, 427
CviKI_1 RGCY 8 cut(s) 77, 120, 179, 183, 245, 317, 341, 427
CviQI GTAC 1 cut(s) 227
DdeI CTNAG 1 cut(s) 489
DpnI GATC 1 cut(s) 254
DpnII GATC 1 cut(s) 252
EciI GGCGGA 1 cut(s) 149
Eco130I CCWWGG 1 cut(s) 97
Eco47I GGWCC 1 cut(s) 154
EcoNI CCTNNNNNAGG 1 cut(s) 440
EcoO109I RGGNCCY 1 cut(s) 154
EcoT14I CCWWGG 1 cut(s) 97
ErhI CCWWGG 1 cut(s) 97
FaeI CATG 3 cut(s) 101, 316, 415
FaiI YATR 5 cut(s) 69, 99, 314, 349, 413
FaqI GGGAC 1 cut(s) 391
FatI CATG 3 cut(s) 97, 312, 411
Fnu4HI GCNGC 3 cut(s) 301, 373, 376
Fsp4HI GCNGC 3 cut(s) 301, 373, 376
GlaI GCGC 2 cut(s) 139, 188
GluI GCNGC 3 cut(s) 301, 373, 376
HaeIII GGCC 2 cut(s) 77, 179
HapII CCGG 2 cut(s) 180, 242
HgaI GACGC 1 cut(s) 441
HhaI GCGC 2 cut(s) 140, 189
Hin1I GRCGYC 1 cut(s) 452
Hin1II CATG 3 cut(s) 101, 316, 415
Hin6I GCGC 2 cut(s) 138, 187
HinP1I GCGC 2 cut(s) 138, 187
HinfI GANTC 1 cut(s) 354
HpaII CCGG 2 cut(s) 180, 242
HphI GGTGA 4 cut(s) 73, 335, 434, 471
Hpy166II GTNNAC 1 cut(s) 104
Hpy188I TCNGA 2 cut(s) 418, 457
Hpy8I GTNNAC 1 cut(s) 104
HpyAV CCTTC 2 cut(s) 66, 413
HpyCH4III ACNGT 1 cut(s) 116
HpyF10VI GCNNNNNNNGC 3 cut(s) 176, 269, 381
HpyF3I CTNAG 1 cut(s) 489
Hsp92I GRCGYC 1 cut(s) 452
Hsp92II CATG 3 cut(s) 101, 316, 415
HspAI GCGC 2 cut(s) 138, 187
KroI GCCGGC 1 cut(s) 179
KroNI GCCGGC 1 cut(s) 181
Kzo9I GATC 1 cut(s) 252
LmnI GCTCC 1 cut(s) 27
Lsp1109I GCAGC 2 cut(s) 312, 384
MalI GATC 1 cut(s) 254
MbiI CCGCTC 1 cut(s) 216
MboI GATC 1 cut(s) 252
MboII GAAGA 2 cut(s) 58, 85
MflI RGATCY 1 cut(s) 252
MluCI AATT 1 cut(s) 362
MlyI GAGTC 1 cut(s) 348
MmeI TCCRAC 1 cut(s) 480
MroNI GCCGGC 1 cut(s) 179
MseI TTAA 1 cut(s) 366
MspA1I CMGCKG 1 cut(s) 375
MspI CCGG 2 cut(s) 180, 242
MvnI CGCG 2 cut(s) 138, 189
MwoI GCNNNNNNNGC 3 cut(s) 176, 269, 381
NaeI GCCGGC 1 cut(s) 181
NcoI CCATGG 1 cut(s) 97
NdeII GATC 1 cut(s) 252
NgoMIV GCCGGC 1 cut(s) 179
NlaIII CATG 3 cut(s) 101, 316, 415
NlaIV GGNNCC 3 cut(s) 10, 195, 205
PaqCI CACCTGC 1 cut(s) 444
PcsI WCGNNNNNNNCGW 1 cut(s) 293
PdiI GCCGGC 1 cut(s) 181
PkrI GCNGC 3 cut(s) 302, 374, 377
PleI GAGTC 1 cut(s) 348
PpsI GAGTC 1 cut(s) 348
PpuMI RGGWCCY 1 cut(s) 154
Psp5II RGGWCCY 1 cut(s) 154
PspN4I GGNNCC 3 cut(s) 10, 195, 205
PspPI GGNCC 2 cut(s) 75, 154
PspPPI RGGWCCY 1 cut(s) 154
PsuI RGATCY 1 cut(s) 252
RsaI GTAC 1 cut(s) 228
RsaNI GTAC 1 cut(s) 227
SaqAI TTAA 1 cut(s) 366
SatI GCNGC 3 cut(s) 301, 373, 376
Sau3AI GATC 1 cut(s) 252
Sau96I GGNCC 2 cut(s) 75, 154
SchI GAGTC 1 cut(s) 348
SinI GGWCC 1 cut(s) 154
Sse9I AATT 1 cut(s) 362
SsiI CCGC 4 cut(s) 5, 160, 214, 375
StyI CCWWGG 1 cut(s) 97
TaaI ACNGT 1 cut(s) 116
TaqI TCGA 2 cut(s) 332, 352
TasI AATT 1 cut(s) 362
TauI GCSGC 1 cut(s) 378
Tru1I TTAA 1 cut(s) 366
Tru9I TTAA 1 cut(s) 366
TscAI CASTG 4 cut(s) 19, 274, 310, 385
TseI GCWGC 2 cut(s) 300, 372
TspRI CASTG 4 cut(s) 19, 274, 310, 385
VpaK11BI GGWCC 1 cut(s) 154
XagI CCTNNNNNAGG 1 cut(s) 440
XapI RAATTY 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.