Rorug05G0030100

BES1 BZR1 homolog protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0017622
Physical Location & Seq
Forward (+)
1911734 .. 1913217
1484 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0030100.1

Sequence Viewer

Length: 735 bp
ATGGGCTCAATGAGTCTGACTTCACTTCTGGGTCATGGTTGCCGGAGTTTCATTGCGCCGGTGGCCCTTGTTTGCACGTTAGCACTGACCCATGTTGCTCTGAGTGAACATTCGAAGAGCTACCAGCATGTGAAGGTGGCTTGGTTTTCTAAGAGGTCCAAGAAGAAGACAAGGGTTGCTTGTGAGTCCTTGAAAGAAGAGGTGACTTACCCAACTGCTACTTCTTCTGTTTATGGCTACCCATATACTCGTCTGCTTCCATGTCCCTCGCAGAATGGACCACCAAGAGTTGAGCACTTGGTTGTTTCAGAAGGAGGGCCTGTTCTAGAATATATATGCAAAAATCTGGATCTTTCTGCTCAGTTTGTTGCAGATCTTATCCATTTTGGAGCTGTGTATTATGCCCTTGTATGTCCAAAGCCTCCTCCAACCGCGACGCCCGAGGAAATGAGGGTATATAAAGAAGCTACAGCACCATCAGTACTGAAAAAGAGAGCTTCTATCAAAGGAAAAACTGTAAGAGAAGCACAGAAGACTTTCAGGATCACACATGTAGACCAATTTGTTGAAGATGGAACGTACTTACGTGTGCATGTACACCCAAAGCGTTTTCCTAGGTGCTATGAAATTGACTGGAAATCAAGAGTTATAGCAGTAAATGAAGACTTTGTGGTGTTGGACAAACCTGCTGGTACAACAGTTGGAGGAACCACAGACAACATCGAAGAAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BES1_N

Protein Analysis

244

Amino Acids

27.11

Weight (kDa)

8.99

Isoelectric Point (pI)

42.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017622)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10040
prunus_persica Prupe.4G089900_v2.0.a1
pyrus_communis pycom10g20920
rosa_chinensis RchiOBHm_Chr5g0015901
rosa_laevigata RLG00000032230
rosa_multiflora Rmu_sc0001878.1_g000013
rosa_roxburghii Rroxscaffold_1G00060690
rosa_rugosa Rorug05G0030100
rosa_samantha Rh5AG123700 Rh5CG134000 Rh5DG122000
rosa_wichuraiana Rw5G010680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 694
AccI GTMKAC 1 cut(s) 555
AccII CGCG 1 cut(s) 434
AciI CCGC 1 cut(s) 432
AclWI GGATC 2 cut(s) 357, 551
AcyI GRCGYC 1 cut(s) 437
AfaI GTAC 4 cut(s) 483, 581, 597, 694
AflIII ACRYGT 2 cut(s) 550, 586
AgsI TTSAA 2 cut(s) 193, 569
AjuI GAANNNNNNNTTGG 2 cut(s) 205, 237
AloI GAACNNNNNNTCC 2 cut(s) 306, 338
AluBI AGCT 4 cut(s) 120, 392, 467, 497
AluI AGCT 4 cut(s) 120, 392, 467, 497
Alw21I GWGCWC 1 cut(s) 297
AlwI GGATC 2 cut(s) 357, 551
Ama87I CYCGRG 1 cut(s) 440
AoxI GGCC 2 cut(s) 63, 317
Asp700I GAANNNNTTC 1 cut(s) 536
AspA2I CCTAGG 1 cut(s) 614
AspLEI GCGC 1 cut(s) 58
AspS9I GGNCC 4 cut(s) 64, 156, 278, 317
AsuHPI GGTGA 1 cut(s) 214
AsuII TTCGAA 1 cut(s) 113
AvaI CYCGRG 1 cut(s) 440
AvaII GGWCC 2 cut(s) 156, 278
AvrII CCTAGG 1 cut(s) 614
BaeI ACNNNNGTAYC 2 cut(s) 684, 717
BanII GRGCYC 1 cut(s) 8
BbsI GAAGAC 3 cut(s) 173, 539, 669
Bbv12I GWGCWC 1 cut(s) 297
BccI CCATC 2 cut(s) 484, 566
BfaI CTAG 2 cut(s) 326, 615
BfmI CTRYAG 1 cut(s) 468
BfuAI ACCTGC 1 cut(s) 694
BglII AGATCT 1 cut(s) 373
BlnI CCTAGG 1 cut(s) 614
BmcAI AGTACT 1 cut(s) 483
Bme18I GGWCC 2 cut(s) 156, 278
BmeT110I CYCGRG 1 cut(s) 440
BmgT120I GGNCC 4 cut(s) 64, 156, 278, 317
BmiI GGNNCC 1 cut(s) 709
BpiI GAAGAC 3 cut(s) 173, 539, 669
Bpu14I TTCGAA 1 cut(s) 113
BsaAI YACGTR 1 cut(s) 587
BsaHI GRCGYC 1 cut(s) 437
BsaJI CCNNGG 2 cut(s) 441, 614
BsaXI ACNNNNNCTCC 2 cut(s) 306, 336
Bse118I RCCGGY 1 cut(s) 58
Bse1I ACTGG 1 cut(s) 638
Bse3DI GCAATG 1 cut(s) 51
BseDI CCNNGG 2 cut(s) 441, 614
BseMI GCAATG 1 cut(s) 51
BseMII CTCAG 2 cut(s) 92, 374
BseNI ACTGG 1 cut(s) 638
BseRI GAGGAG 1 cut(s) 414
Bsh1236I CGCG 1 cut(s) 434
BshFI GGCC 2 cut(s) 65, 319
BsiHKAI GWGCWC 1 cut(s) 297
BsiHKCI CYCGRG 1 cut(s) 440
BsiSI CCGG 2 cut(s) 43, 59
BslFI GGGAC 1 cut(s) 249
BsmFI GGGAC 1 cut(s) 249
BsnI GGCC 2 cut(s) 65, 319
BsoBI CYCGRG 1 cut(s) 440
Bsp119I TTCGAA 1 cut(s) 113
Bsp1286I GDGCHC 2 cut(s) 8, 297
Bsp1407I TGTACA 1 cut(s) 595
Bsp143I GATC 3 cut(s) 349, 373, 543
BspACI CCGC 1 cut(s) 432
BspANI GGCC 2 cut(s) 65, 319
BspCNI CTCAG 2 cut(s) 93, 373
BspFNI CGCG 1 cut(s) 434
BspLI GGNNCC 1 cut(s) 709
BspMI ACCTGC 1 cut(s) 694
BspPI GGATC 2 cut(s) 357, 551
BspQI GCTCTTC 1 cut(s) 110
BspT104I TTCGAA 1 cut(s) 113
BsrDI GCAATG 1 cut(s) 51
BsrFI RCCGGY 1 cut(s) 58
BsrGI TGTACA 1 cut(s) 595
BsrI ACTGG 1 cut(s) 638
BssAI RCCGGY 1 cut(s) 58
BssECI CCNNGG 2 cut(s) 441, 614
BssMI GATC 3 cut(s) 349, 373, 543
BssNI GRCGYC 1 cut(s) 437
BssT1I CCWWGG 1 cut(s) 614
Bst4CI ACNGT 2 cut(s) 517, 700
Bst6I CTCTTC 2 cut(s) 110, 192
BstACI GRCGYC 1 cut(s) 437
BstAUI TGTACA 1 cut(s) 595
BstBAI YACGTR 1 cut(s) 587
BstBI TTCGAA 1 cut(s) 113
BstDEI CTNAG 3 cut(s) 101, 150, 360
BstFNI CGCG 1 cut(s) 434
BstHHI GCGC 1 cut(s) 58
BstKTI GATC 3 cut(s) 352, 376, 546
BstMBI GATC 3 cut(s) 349, 373, 543
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstNSI RCATGY 3 cut(s) 131, 554, 596
BstSFI CTRYAG 1 cut(s) 468
BstUI CGCG 1 cut(s) 434
BstV2I GAAGAC 3 cut(s) 173, 539, 669
BstX2I RGATCY 2 cut(s) 349, 373
BstYI RGATCY 2 cut(s) 349, 373
BsuRI GGCC 2 cut(s) 65, 319
BtsIMutI CAGTG 1 cut(s) 83
BveI ACCTGC 1 cut(s) 694
CfoI GCGC 1 cut(s) 58
Cfr10I RCCGGY 1 cut(s) 58
Cfr13I GGNCC 4 cut(s) 64, 156, 278, 317
CseI GACGC 1 cut(s) 445
Csp6I GTAC 4 cut(s) 482, 580, 596, 693
CviAII CATG 6 cut(s) 35, 92, 128, 261, 551, 593
CviQI GTAC 4 cut(s) 482, 580, 596, 693
DdeI CTNAG 3 cut(s) 101, 150, 360
DpnI GATC 3 cut(s) 351, 375, 545
DpnII GATC 3 cut(s) 349, 373, 543
Eam1104I CTCTTC 2 cut(s) 110, 192
EarI CTCTTC 2 cut(s) 110, 192
Eco130I CCWWGG 1 cut(s) 614
Eco24I GRGCYC 1 cut(s) 8
Eco47I GGWCC 2 cut(s) 156, 278
Eco88I CYCGRG 1 cut(s) 440
EcoO109I RGGNCCY 1 cut(s) 317
EcoT14I CCWWGG 1 cut(s) 614
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 1 cut(s) 614
FaeI CATG 6 cut(s) 38, 95, 131, 264, 554, 596
FalI AAGNNNNNCTT 2 cut(s) 163, 195
FaqI GGGAC 1 cut(s) 249
FatI CATG 6 cut(s) 34, 91, 127, 260, 550, 592
FblI GTMKAC 1 cut(s) 555
FriOI GRGCYC 1 cut(s) 8
FspBI CTAG 2 cut(s) 326, 615
GlaI GCGC 1 cut(s) 57
HaeIII GGCC 2 cut(s) 65, 319
HapII CCGG 2 cut(s) 43, 59
HgaI GACGC 1 cut(s) 445
HhaI GCGC 1 cut(s) 58
Hin1I GRCGYC 1 cut(s) 437
Hin1II CATG 6 cut(s) 38, 95, 131, 264, 554, 596
Hin6I GCGC 1 cut(s) 56
HinP1I GCGC 1 cut(s) 56
HinfI GANTC 2 cut(s) 13, 185
HpaII CCGG 2 cut(s) 43, 59
HphI GGTGA 1 cut(s) 214
Hpy166II GTNNAC 3 cut(s) 107, 556, 598
Hpy188I TCNGA 3 cut(s) 18, 102, 310
Hpy188III TCNNGA 4 cut(s) 326, 347, 541, 642
Hpy8I GTNNAC 3 cut(s) 107, 556, 598
Hpy99I CGWCG 1 cut(s) 439
HpyAV CCTTC 2 cut(s) 127, 305
HpyCH4III ACNGT 2 cut(s) 517, 700
HpyCH4IV ACGT 3 cut(s) 77, 578, 586
HpyCH4V TGCA 4 cut(s) 75, 339, 371, 592
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
HpyF3I CTNAG 3 cut(s) 101, 150, 360
HpySE526I ACGT 3 cut(s) 77, 578, 586
Hsp92I GRCGYC 1 cut(s) 437
Hsp92II CATG 6 cut(s) 38, 95, 131, 264, 554, 596
HspAI GCGC 1 cut(s) 56
Kzo9I GATC 3 cut(s) 349, 373, 543
LguI GCTCTTC 1 cut(s) 110
LmnI GCTCC 1 cut(s) 389
MaeI CTAG 2 cut(s) 326, 615
MaeII ACGT 3 cut(s) 77, 578, 586
MaeIII GTNAC 1 cut(s) 202
MalI GATC 3 cut(s) 351, 375, 545
MboI GATC 3 cut(s) 349, 373, 543
MboII GAAGA 8 cut(s) 127, 175, 178, 209, 216, 544, 581, 674
MflI RGATCY 2 cut(s) 349, 373
MhlI GDGCHC 2 cut(s) 8, 297
MluCI AATT 2 cut(s) 560, 627
MlyI GAGTC 2 cut(s) 22, 194
MmeI TCCRAC 3 cut(s) 452, 657, 682
MnlI CCTC 9 cut(s) 147, 193, 277, 308, 432, 435, 436, 444, 698
MroXI GAANNNNTTC 1 cut(s) 536
MspI CCGG 2 cut(s) 43, 59
MvnI CGCG 1 cut(s) 434
MwoI GCNNNNNNNGC 1 cut(s) 62
NdeII GATC 3 cut(s) 349, 373, 543
NlaIII CATG 6 cut(s) 38, 95, 131, 264, 554, 596
NlaIV GGNNCC 1 cut(s) 709
NmuCI GTSAC 1 cut(s) 202
NspI RCATGY 3 cut(s) 131, 554, 596
NspV TTCGAA 1 cut(s) 113
PciI ACATGT 1 cut(s) 550
PciSI GCTCTTC 1 cut(s) 110
PdmI GAANNNNTTC 1 cut(s) 536
PleI GAGTC 2 cut(s) 21, 193
PpsI GAGTC 2 cut(s) 21, 193
Ppu21I YACGTR 1 cut(s) 587
PscI ACATGT 1 cut(s) 550
PspN4I GGNNCC 1 cut(s) 709
PspPI GGNCC 4 cut(s) 64, 156, 278, 317
PsuI RGATCY 2 cut(s) 349, 373
RsaI GTAC 4 cut(s) 483, 581, 597, 694
RsaNI GTAC 4 cut(s) 482, 580, 596, 693
SapI GCTCTTC 1 cut(s) 110
Sau3AI GATC 3 cut(s) 349, 373, 543
Sau96I GGNCC 4 cut(s) 64, 156, 278, 317
ScaI AGTACT 1 cut(s) 483
SchI GAGTC 2 cut(s) 22, 194
SduI GDGCHC 2 cut(s) 8, 297
SfcI CTRYAG 1 cut(s) 468
SfuI TTCGAA 1 cut(s) 113
SgrAI CRCCGGYG 1 cut(s) 58
SinI GGWCC 2 cut(s) 156, 278
Sse9I AATT 2 cut(s) 560, 627
SsiI CCGC 1 cut(s) 432
SspMI CTAG 2 cut(s) 326, 615
StyI CCWWGG 1 cut(s) 614
TaaI ACNGT 2 cut(s) 517, 700
TaiI ACGT 3 cut(s) 80, 581, 589
TaqI TCGA 2 cut(s) 113, 723
TasI AATT 2 cut(s) 560, 627
TatI WGTACW 2 cut(s) 481, 595
TscAI CASTG 1 cut(s) 90
TseFI GTSAC 1 cut(s) 202
Tsp45I GTSAC 1 cut(s) 202
TspDTI ATGAA 3 cut(s) 40, 639, 675
TspRI CASTG 1 cut(s) 90
VpaK11BI GGWCC 2 cut(s) 156, 278
XbaI TCTAGA 1 cut(s) 325
XceI RCATGY 3 cut(s) 131, 554, 596
XmaJI CCTAGG 1 cut(s) 614
XmiI GTMKAC 1 cut(s) 555
XmnI GAANNNNTTC 1 cut(s) 536
XspI CTAG 2 cut(s) 326, 615
ZrmI AGTACT 1 cut(s) 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.