RLG00000032230

BES1 BZR1 homolog protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0017622
Physical Location & Seq
Reverse (-)
12287596 .. 12288169
574 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032230

Sequence Viewer

Length: 483 bp
ATGGCGGGAACCAGTGGGAGGAGCGAGAGTGAGAAAGAGAAGACAAGAATACGGGAGAGGCAGAGAAGGGCCATCACCACTAAAATCTTCCATGGTTTACGCAAACACGGTGGCTACAAACTCTCTCCTCGCGCTGACATCAATGAGGTCCTCCGCCATCTTGCTAAGGAGGCCGGCTGGCTCGTGGAACCTGATGGCACCACCTACCGCTCTAATGTACTGAATTTCTGTCCGGCTTGTGGGATCTCCAAAGCAAGCACTGCCACAGCAATGGCAACGCCAACACCGAGCAGCAGTGTGGTCATGGCTGGTGGTGAATGTTCGACCACAGCTTCGCCACTTCGACTCCCTGAATTTAACAGCAGTGGCAGTGGCACGCACTCCATCTGCCCATTGTCCCTCATGTCCGAAGGTGAGCTACACCACCTGCCGGAGGTCAGAGCGTCCAACAACTCCACACCTGTTGCTTCACCTCACTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BES1_N

Protein Analysis

161

Amino Acids

17.1

Weight (kDa)

9.26

Isoelectric Point (pI)

57.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BES1_N PF05687 6 - 116 1.4e-33 BES1/BZR1 plant transcription factor, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017622)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10040
prunus_persica Prupe.4G089900_v2.0.a1
pyrus_communis pycom10g20920
rosa_chinensis RchiOBHm_Chr5g0015901
rosa_laevigata RLG00000032230
rosa_multiflora Rmu_sc0001878.1_g000013
rosa_roxburghii Rroxscaffold_1G00060690
rosa_rugosa Rorug05G0030100
rosa_samantha Rh5AG123700 Rh5CG134000 Rh5DG122000
rosa_wichuraiana Rw5G010680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 435
Acc36I ACCTGC 1 cut(s) 435
AccB1I GGYRCC 1 cut(s) 197
AccBSI CCGCTC 1 cut(s) 210
AccII CGCG 1 cut(s) 132
AciI CCGC 3 cut(s) 5, 154, 208
AclWI GGATC 1 cut(s) 251
AcsI RAATTY 2 cut(s) 223, 353
AfaI GTAC 1 cut(s) 219
AfiI CCNNNNNNNGG 4 cut(s) 18, 239, 430, 433
AluBI AGCT 2 cut(s) 332, 418
AluI AGCT 2 cut(s) 332, 418
AlwI GGATC 1 cut(s) 251
AoxI GGCC 2 cut(s) 69, 171
ApeKI GCWGC 1 cut(s) 291
ApoI RAATTY 2 cut(s) 223, 353
ArsI GACNNNNNNTTYG 2 cut(s) 316, 348
AspLEI GCGC 1 cut(s) 134
AspS9I GGNCC 2 cut(s) 69, 148
AsuHPI GGTGA 4 cut(s) 67, 326, 425, 462
AvaII GGWCC 1 cut(s) 148
BanI GGYRCC 1 cut(s) 197
BarI GAAGNNNNNNTAC 2 cut(s) 402, 434
BauI CACGAG 1 cut(s) 182
BbsI GAAGAC 1 cut(s) 47
BbvI GCAGC 1 cut(s) 303
BccI CCATC 4 cut(s) 80, 165, 188, 392
BfuAI ACCTGC 1 cut(s) 435
BisI GCNGC 1 cut(s) 292
BlsI GCNGC 1 cut(s) 293
Bme18I GGWCC 1 cut(s) 148
BmgT120I GGNCC 2 cut(s) 69, 148
BmiI GGNNCC 3 cut(s) 10, 189, 199
BpiI GAAGAC 1 cut(s) 47
Bpu10I CCTNAGC 1 cut(s) 165
BsaJI CCNNGG 1 cut(s) 91
BsaXI ACNNNNNCTCC 4 cut(s) 13, 43, 330, 360
Bsc4I CCNNNNNNNGG 4 cut(s) 18, 239, 430, 433
Bse118I RCCGGY 1 cut(s) 173
Bse1I ACTGG 1 cut(s) 12
Bse3DI GCAATG 1 cut(s) 276
BseDI CCNNGG 1 cut(s) 91
BseLI CCNNNNNNNGG 4 cut(s) 18, 239, 430, 433
BseMI GCAATG 1 cut(s) 276
BseNI ACTGG 1 cut(s) 12
BseRI GAGGAG 2 cut(s) 34, 117
BseXI GCAGC 1 cut(s) 303
Bsh1236I CGCG 1 cut(s) 132
BshFI GGCC 2 cut(s) 71, 173
BshNI GGYRCC 1 cut(s) 197
BsiSI CCGG 3 cut(s) 174, 233, 431
BslFI GGGAC 1 cut(s) 382
BslI CCNNNNNNNGG 4 cut(s) 18, 239, 430, 433
BsmFI GGGAC 1 cut(s) 382
BsnI GGCC 2 cut(s) 71, 173
Bsp143I GATC 1 cut(s) 243
Bsp19I CCATGG 1 cut(s) 91
BspACI CCGC 3 cut(s) 5, 154, 208
BspANI GGCC 2 cut(s) 71, 173
BspFNI CGCG 1 cut(s) 132
BspLI GGNNCC 3 cut(s) 10, 189, 199
BspMI ACCTGC 1 cut(s) 435
BspPI GGATC 1 cut(s) 251
BspT107I GGYRCC 1 cut(s) 197
BsrBI CCGCTC 1 cut(s) 210
BsrDI GCAATG 1 cut(s) 276
BsrFI RCCGGY 1 cut(s) 173
BsrI ACTGG 1 cut(s) 12
BssAI RCCGGY 1 cut(s) 173
BssECI CCNNGG 1 cut(s) 91
BssMI GATC 1 cut(s) 243
BssSI CACGAG 1 cut(s) 182
BssT1I CCWWGG 1 cut(s) 91
Bst2BI CACGAG 1 cut(s) 182
Bst4CI ACNGT 1 cut(s) 110
BstAPI GCANNNNNTGC 1 cut(s) 260
BstC8I GCNNGC 4 cut(s) 175, 179, 256, 377
BstDEI CTNAG 2 cut(s) 165, 480
BstDSI CCRYGG 1 cut(s) 91
BstENI CCTNNNNNAGG 1 cut(s) 431
BstFNI CGCG 1 cut(s) 132
BstHHI GCGC 1 cut(s) 134
BstKTI GATC 1 cut(s) 246
BstMBI GATC 1 cut(s) 243
BstMWI GCNNNNNNNGC 2 cut(s) 170, 260
BstUI CGCG 1 cut(s) 132
BstV1I GCAGC 1 cut(s) 303
BstV2I GAAGAC 1 cut(s) 47
BstX2I RGATCY 1 cut(s) 243
BstXI CCANNNNNNTGG 1 cut(s) 271
BstYI RGATCY 1 cut(s) 243
BsuRI GGCC 2 cut(s) 71, 173
BtgI CCRYGG 1 cut(s) 91
BtsI GCAGTG 4 cut(s) 258, 301, 370, 376
BtsIMutI CAGTG 5 cut(s) 19, 258, 301, 370, 376
BveI ACCTGC 1 cut(s) 435
Cac8I GCNNGC 4 cut(s) 175, 179, 256, 377
CfoI GCGC 1 cut(s) 134
Cfr10I RCCGGY 1 cut(s) 173
Cfr13I GGNCC 2 cut(s) 69, 148
CseI GACGC 1 cut(s) 432
Csp6I GTAC 1 cut(s) 218
CspCI CAANNNNNGTGG 4 cut(s) 91, 126, 445, 480
CviAII CATG 3 cut(s) 92, 304, 403
CviJI RGCY 9 cut(s) 71, 114, 173, 177, 181, 236, 308, 332, 418
CviKI_1 RGCY 9 cut(s) 71, 114, 173, 177, 181, 236, 308, 332, 418
CviQI GTAC 1 cut(s) 218
DdeI CTNAG 2 cut(s) 165, 480
DpnI GATC 1 cut(s) 245
DpnII GATC 1 cut(s) 243
EciI GGCGGA 1 cut(s) 143
Eco130I CCWWGG 1 cut(s) 91
Eco47I GGWCC 1 cut(s) 148
EcoNI CCTNNNNNAGG 1 cut(s) 431
EcoO109I RGGNCCY 1 cut(s) 148
EcoT14I CCWWGG 1 cut(s) 91
ErhI CCWWGG 1 cut(s) 91
FaeI CATG 3 cut(s) 95, 307, 406
FaiI YATR 3 cut(s) 93, 305, 404
FaqI GGGAC 1 cut(s) 382
FatI CATG 3 cut(s) 91, 303, 402
Fnu4HI GCNGC 1 cut(s) 292
Fsp4HI GCNGC 1 cut(s) 292
GlaI GCGC 1 cut(s) 133
GluI GCNGC 1 cut(s) 292
HaeIII GGCC 2 cut(s) 71, 173
HapII CCGG 3 cut(s) 174, 233, 431
HgaI GACGC 1 cut(s) 432
HhaI GCGC 1 cut(s) 134
Hin1II CATG 3 cut(s) 95, 307, 406
Hin6I GCGC 1 cut(s) 132
HinP1I GCGC 1 cut(s) 132
HinfI GANTC 1 cut(s) 345
HpaII CCGG 3 cut(s) 174, 233, 431
HphI GGTGA 4 cut(s) 67, 326, 425, 462
Hpy166II GTNNAC 1 cut(s) 98
Hpy188I TCNGA 2 cut(s) 409, 440
Hpy8I GTNNAC 1 cut(s) 98
HpyAV CCTTC 2 cut(s) 60, 404
HpyCH4III ACNGT 1 cut(s) 110
HpyF10VI GCNNNNNNNGC 2 cut(s) 170, 260
HpyF3I CTNAG 2 cut(s) 165, 480
Hsp92II CATG 3 cut(s) 95, 307, 406
HspAI GCGC 1 cut(s) 132
KroI GCCGGC 1 cut(s) 173
KroNI GCCGGC 1 cut(s) 175
Kzo9I GATC 1 cut(s) 243
LmnI GCTCC 1 cut(s) 21
Lsp1109I GCAGC 1 cut(s) 303
MalI GATC 1 cut(s) 245
MbiI CCGCTC 1 cut(s) 210
MboI GATC 1 cut(s) 243
MboII GAAGA 2 cut(s) 52, 79
MflI RGATCY 1 cut(s) 243
MluCI AATT 2 cut(s) 223, 353
MlyI GAGTC 1 cut(s) 339
MmeI TCCRAC 1 cut(s) 471
MnlI CCTC 9 cut(s) 12, 51, 138, 139, 161, 163, 410, 427, 483
MroNI GCCGGC 1 cut(s) 173
MseI TTAA 1 cut(s) 357
MslI CAYNNNNRTG 1 cut(s) 269
MspI CCGG 3 cut(s) 174, 233, 431
MvnI CGCG 1 cut(s) 132
MwoI GCNNNNNNNGC 2 cut(s) 170, 260
NaeI GCCGGC 1 cut(s) 175
NcoI CCATGG 1 cut(s) 91
NdeII GATC 1 cut(s) 243
NgoMIV GCCGGC 1 cut(s) 173
NlaIII CATG 3 cut(s) 95, 307, 406
NlaIV GGNNCC 3 cut(s) 10, 189, 199
PaqCI CACCTGC 1 cut(s) 435
PcsI WCGNNNNNNNCGW 1 cut(s) 284
PdiI GCCGGC 1 cut(s) 175
PkrI GCNGC 1 cut(s) 293
PleI GAGTC 1 cut(s) 339
PpsI GAGTC 1 cut(s) 339
PpuMI RGGWCCY 1 cut(s) 148
Psp5II RGGWCCY 1 cut(s) 148
PspN4I GGNNCC 3 cut(s) 10, 189, 199
PspPI GGNCC 2 cut(s) 69, 148
PspPPI RGGWCCY 1 cut(s) 148
PsuI RGATCY 1 cut(s) 243
RsaI GTAC 1 cut(s) 219
RsaNI GTAC 1 cut(s) 218
RseI CAYNNNNRTG 1 cut(s) 269
SaqAI TTAA 1 cut(s) 357
SatI GCNGC 1 cut(s) 292
Sau3AI GATC 1 cut(s) 243
Sau96I GGNCC 2 cut(s) 69, 148
SchI GAGTC 1 cut(s) 339
SinI GGWCC 1 cut(s) 148
SmiMI CAYNNNNRTG 1 cut(s) 269
Sse9I AATT 2 cut(s) 223, 353
SsiI CCGC 3 cut(s) 5, 154, 208
StyI CCWWGG 1 cut(s) 91
TaaI ACNGT 1 cut(s) 110
TaqI TCGA 2 cut(s) 323, 343
TasI AATT 2 cut(s) 223, 353
TatI WGTACW 1 cut(s) 217
Tru1I TTAA 1 cut(s) 357
Tru9I TTAA 1 cut(s) 357
TscAI CASTG 5 cut(s) 19, 265, 301, 370, 376
TseI GCWGC 1 cut(s) 291
TspRI CASTG 5 cut(s) 19, 265, 301, 370, 376
VpaK11BI GGWCC 1 cut(s) 148
XagI CCTNNNNNAGG 1 cut(s) 431
XapI RAATTY 2 cut(s) 223, 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.