Rh5CG134000

BES1 BZR1 homolog protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0017622
Physical Location & Seq
Reverse (-)
11171562 .. 11172141
580 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG134000.1

Sequence Viewer

Length: 489 bp
ATGGCGGGAACCAGTGGGAGTGGGAGGAGCGAGAGTGAGAAAGAGAAGACAAGGATACGGGAGAGGCATAGAAGGGCCATCACCACTAAAATCTTCCATGGTTTACGCAAACACGGTGGCTACAAACTCCCTCCTCGCGCTGACATCAATGAGGTCCTCCGCCATCTTGCTAAAGAGGCCGGCTGGCGCGTGGAACCTGATGGCACCACCTACCGCTCTAATGTACTGGATTTCTGTCCGGCTTGTGGGATCTCCAAAGCAAGCACTGCCACAGCAATAGCAACGCCAACACCGAGCAGCAGTGTGGTCATGGCTGGTGGTGAATGTTCGACCACAGCTTCGCCATATCGACTCCCTGAATTTAACAGCAGCGGCAGTGGCACGCACTCCATCTGCCCATTGTCCCTCATGTCCGAAGGTGAGCTACACCACCTGCCAGAGGTCAGGGCGTCCGACCACTCCACACCTGTTGCTTCACCTCACTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BES1_N

Protein Analysis

162

Amino Acids

17.36

Weight (kDa)

9.02

Isoelectric Point (pI)

53.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BES1_N PF05687 7 - 117 8.7e-35 BES1/BZR1 plant transcription factor, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017622)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10040
prunus_persica Prupe.4G089900_v2.0.a1
pyrus_communis pycom10g20920
rosa_chinensis RchiOBHm_Chr5g0015901
rosa_laevigata RLG00000032230
rosa_multiflora Rmu_sc0001878.1_g000013
rosa_roxburghii Rroxscaffold_1G00060690
rosa_rugosa Rorug05G0030100
rosa_samantha Rh5AG123700 Rh5CG134000 Rh5DG122000
rosa_wichuraiana Rw5G010680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 441
Acc36I ACCTGC 1 cut(s) 441
AccB1I GGYRCC 1 cut(s) 203
AccBSI CCGCTC 1 cut(s) 216
AccII CGCG 2 cut(s) 138, 189
AciI CCGC 4 cut(s) 5, 160, 214, 372
AclWI GGATC 1 cut(s) 257
AcsI RAATTY 1 cut(s) 359
AcyI GRCGYC 1 cut(s) 449
AfaI GTAC 1 cut(s) 225
AfiI CCNNNNNNNGG 2 cut(s) 245, 439
AluBI AGCT 2 cut(s) 338, 424
AluI AGCT 2 cut(s) 338, 424
AlwI GGATC 1 cut(s) 257
AoxI GGCC 2 cut(s) 75, 177
ApeKI GCWGC 2 cut(s) 297, 369
ApoI RAATTY 1 cut(s) 359
ArsI GACNNNNNNTTYG 2 cut(s) 322, 354
AspLEI GCGC 2 cut(s) 140, 189
AspS9I GGNCC 2 cut(s) 75, 154
AsuHPI GGTGA 4 cut(s) 73, 332, 431, 468
AvaII GGWCC 1 cut(s) 154
BanI GGYRCC 1 cut(s) 203
BarI GAAGNNNNNNTAC 2 cut(s) 408, 440
BbsI GAAGAC 1 cut(s) 53
BbvI GCAGC 2 cut(s) 309, 381
BccI CCATC 4 cut(s) 86, 171, 194, 398
BciVI GTATCC 1 cut(s) 48
BfuAI ACCTGC 1 cut(s) 441
BfuI GTATCC 1 cut(s) 48
BisI GCNGC 3 cut(s) 298, 370, 373
BlsI GCNGC 3 cut(s) 299, 371, 374
Bme18I GGWCC 1 cut(s) 154
BmgT120I GGNCC 2 cut(s) 75, 154
BmiI GGNNCC 3 cut(s) 10, 195, 205
BpiI GAAGAC 1 cut(s) 53
BsaHI GRCGYC 1 cut(s) 449
BsaJI CCNNGG 1 cut(s) 97
BsaXI ACNNNNNCTCC 2 cut(s) 19, 49
Bsc4I CCNNNNNNNGG 2 cut(s) 245, 439
Bse118I RCCGGY 1 cut(s) 179
Bse1I ACTGG 2 cut(s) 12, 231
BseDI CCNNGG 1 cut(s) 97
BseLI CCNNNNNNNGG 2 cut(s) 245, 439
BseNI ACTGG 2 cut(s) 12, 231
BseRI GAGGAG 2 cut(s) 40, 123
BseXI GCAGC 2 cut(s) 309, 381
Bsh1236I CGCG 2 cut(s) 138, 189
BshFI GGCC 2 cut(s) 77, 179
BshNI GGYRCC 1 cut(s) 203
BsiSI CCGG 2 cut(s) 180, 239
BslFI GGGAC 1 cut(s) 388
BslI CCNNNNNNNGG 2 cut(s) 245, 439
BsmFI GGGAC 1 cut(s) 388
BsnI GGCC 2 cut(s) 77, 179
Bsp143I GATC 1 cut(s) 249
Bsp19I CCATGG 1 cut(s) 97
BspACI CCGC 4 cut(s) 5, 160, 214, 372
BspANI GGCC 2 cut(s) 77, 179
BspFNI CGCG 2 cut(s) 138, 189
BspLI GGNNCC 3 cut(s) 10, 195, 205
BspMI ACCTGC 1 cut(s) 441
BspPI GGATC 1 cut(s) 257
BspT107I GGYRCC 1 cut(s) 203
BsrBI CCGCTC 1 cut(s) 216
BsrFI RCCGGY 1 cut(s) 179
BsrI ACTGG 2 cut(s) 12, 231
BssAI RCCGGY 1 cut(s) 179
BssECI CCNNGG 1 cut(s) 97
BssMI GATC 1 cut(s) 249
BssNI GRCGYC 1 cut(s) 449
BssT1I CCWWGG 1 cut(s) 97
Bst4CI ACNGT 1 cut(s) 116
BstACI GRCGYC 1 cut(s) 449
BstAPI GCANNNNNTGC 1 cut(s) 266
BstC8I GCNNGC 4 cut(s) 181, 185, 262, 383
BstDEI CTNAG 1 cut(s) 486
BstDSI CCRYGG 1 cut(s) 97
BstENI CCTNNNNNAGG 1 cut(s) 437
BstFNI CGCG 2 cut(s) 138, 189
BstHHI GCGC 2 cut(s) 140, 189
BstKTI GATC 1 cut(s) 252
BstMBI GATC 1 cut(s) 249
BstMWI GCNNNNNNNGC 3 cut(s) 176, 266, 378
BstUI CGCG 2 cut(s) 138, 189
BstV1I GCAGC 2 cut(s) 309, 381
BstV2I GAAGAC 1 cut(s) 53
BstX2I RGATCY 1 cut(s) 249
BstYI RGATCY 1 cut(s) 249
BsuI GTATCC 1 cut(s) 48
BsuRI GGCC 2 cut(s) 77, 179
BtgI CCRYGG 1 cut(s) 97
BtsI GCAGTG 3 cut(s) 264, 307, 382
BtsIMutI CAGTG 4 cut(s) 19, 264, 307, 382
BveI ACCTGC 1 cut(s) 441
Cac8I GCNNGC 4 cut(s) 181, 185, 262, 383
CfoI GCGC 2 cut(s) 140, 189
Cfr10I RCCGGY 1 cut(s) 179
Cfr13I GGNCC 2 cut(s) 75, 154
CseI GACGC 1 cut(s) 438
Csp6I GTAC 1 cut(s) 224
CspCI CAANNNNNGTGG 4 cut(s) 97, 132, 451, 486
CviAII CATG 3 cut(s) 98, 310, 409
CviJI RGCY 8 cut(s) 77, 120, 179, 183, 242, 314, 338, 424
CviKI_1 RGCY 8 cut(s) 77, 120, 179, 183, 242, 314, 338, 424
CviQI GTAC 1 cut(s) 224
DdeI CTNAG 1 cut(s) 486
DpnI GATC 1 cut(s) 251
DpnII GATC 1 cut(s) 249
EciI GGCGGA 1 cut(s) 149
Eco130I CCWWGG 1 cut(s) 97
Eco47I GGWCC 1 cut(s) 154
EcoNI CCTNNNNNAGG 1 cut(s) 437
EcoO109I RGGNCCY 1 cut(s) 154
EcoT14I CCWWGG 1 cut(s) 97
ErhI CCWWGG 1 cut(s) 97
FaeI CATG 3 cut(s) 101, 313, 412
FaiI YATR 5 cut(s) 69, 99, 311, 346, 410
FaqI GGGAC 1 cut(s) 388
FatI CATG 3 cut(s) 97, 309, 408
Fnu4HI GCNGC 3 cut(s) 298, 370, 373
Fsp4HI GCNGC 3 cut(s) 298, 370, 373
GlaI GCGC 2 cut(s) 139, 188
GluI GCNGC 3 cut(s) 298, 370, 373
HaeIII GGCC 2 cut(s) 77, 179
HapII CCGG 2 cut(s) 180, 239
HgaI GACGC 1 cut(s) 438
HhaI GCGC 2 cut(s) 140, 189
Hin1I GRCGYC 1 cut(s) 449
Hin1II CATG 3 cut(s) 101, 313, 412
Hin6I GCGC 2 cut(s) 138, 187
HinP1I GCGC 2 cut(s) 138, 187
HinfI GANTC 1 cut(s) 351
HpaII CCGG 2 cut(s) 180, 239
HphI GGTGA 4 cut(s) 73, 332, 431, 468
Hpy166II GTNNAC 1 cut(s) 104
Hpy188I TCNGA 2 cut(s) 415, 454
Hpy8I GTNNAC 1 cut(s) 104
HpyAV CCTTC 2 cut(s) 66, 410
HpyCH4III ACNGT 1 cut(s) 116
HpyF10VI GCNNNNNNNGC 3 cut(s) 176, 266, 378
HpyF3I CTNAG 1 cut(s) 486
Hsp92I GRCGYC 1 cut(s) 449
Hsp92II CATG 3 cut(s) 101, 313, 412
HspAI GCGC 2 cut(s) 138, 187
KroI GCCGGC 1 cut(s) 179
KroNI GCCGGC 1 cut(s) 181
Kzo9I GATC 1 cut(s) 249
LmnI GCTCC 1 cut(s) 27
Lsp1109I GCAGC 2 cut(s) 309, 381
MalI GATC 1 cut(s) 251
MbiI CCGCTC 1 cut(s) 216
MboI GATC 1 cut(s) 249
MboII GAAGA 2 cut(s) 58, 85
MflI RGATCY 1 cut(s) 249
MluCI AATT 1 cut(s) 359
MlyI GAGTC 1 cut(s) 345
MmeI TCCRAC 1 cut(s) 477
MroNI GCCGGC 1 cut(s) 179
MseI TTAA 1 cut(s) 363
MspA1I CMGCKG 1 cut(s) 372
MspI CCGG 2 cut(s) 180, 239
MvnI CGCG 2 cut(s) 138, 189
MwoI GCNNNNNNNGC 3 cut(s) 176, 266, 378
NaeI GCCGGC 1 cut(s) 181
NcoI CCATGG 1 cut(s) 97
NdeII GATC 1 cut(s) 249
NgoMIV GCCGGC 1 cut(s) 179
NlaIII CATG 3 cut(s) 101, 313, 412
NlaIV GGNNCC 3 cut(s) 10, 195, 205
PaqCI CACCTGC 1 cut(s) 441
PcsI WCGNNNNNNNCGW 1 cut(s) 290
PdiI GCCGGC 1 cut(s) 181
PkrI GCNGC 3 cut(s) 299, 371, 374
PleI GAGTC 1 cut(s) 345
PpsI GAGTC 1 cut(s) 345
PpuMI RGGWCCY 1 cut(s) 154
Psp5II RGGWCCY 1 cut(s) 154
PspN4I GGNNCC 3 cut(s) 10, 195, 205
PspPI GGNCC 2 cut(s) 75, 154
PspPPI RGGWCCY 1 cut(s) 154
PsuI RGATCY 1 cut(s) 249
RsaI GTAC 1 cut(s) 225
RsaNI GTAC 1 cut(s) 224
SaqAI TTAA 1 cut(s) 363
SatI GCNGC 3 cut(s) 298, 370, 373
Sau3AI GATC 1 cut(s) 249
Sau96I GGNCC 2 cut(s) 75, 154
SchI GAGTC 1 cut(s) 345
SinI GGWCC 1 cut(s) 154
Sse9I AATT 1 cut(s) 359
SsiI CCGC 4 cut(s) 5, 160, 214, 372
StyI CCWWGG 1 cut(s) 97
TaaI ACNGT 1 cut(s) 116
TaqI TCGA 2 cut(s) 329, 349
TasI AATT 1 cut(s) 359
TatI WGTACW 1 cut(s) 223
TauI GCSGC 1 cut(s) 375
Tru1I TTAA 1 cut(s) 363
Tru9I TTAA 1 cut(s) 363
TscAI CASTG 4 cut(s) 19, 271, 307, 382
TseI GCWGC 2 cut(s) 297, 369
TspRI CASTG 4 cut(s) 19, 271, 307, 382
VpaK11BI GGWCC 1 cut(s) 154
XagI CCTNNNNNAGG 1 cut(s) 437
XapI RAATTY 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.