FvH4_3g10181

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0017262
Physical Location & Seq
Reverse (-)
5938482 .. 5939081
600 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g10181.t1

Sequence Viewer

Length: 264 bp
ATGGAGTTGCTGAACCAGCTGCTAGATGGGCTTGATCAGCTTGCGAAGGTGGAAATGGCAACCAATAGACCTGATACTCCAGACTCTGTGCTCCTCCGGCCTGCTAGGGAACTTGATCATGAGGCAATTGTCAAGCATGCTGAGGGCTTTAATGGGGCTGATCTTAGGAATGTCTGCGCCGAAGGTGGAATGTTTGACATCCGTGCAGAACGGGATTATGAACGGCAACTCAAGAGTAGTCTCCTTTTTGAAATAAACAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030162 GO:0030163 GO:0030312 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033554 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0055044 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

88

Amino Acids

9.81

Weight (kDa)

4.66

Isoelectric Point (pI)

21.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_lid_3 PF17862 38 - 69 3.5e-06 AAA+ lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 251
AluBI AGCT 2 cut(s) 19, 40
AluI AGCT 2 cut(s) 19, 40
Alw21I GWGCWC 1 cut(s) 93
Alw26I GTCTC 1 cut(s) 245
AlwNI CAGNNNCTG 1 cut(s) 86
AoxI GGCC 1 cut(s) 98
ApeKI GCWGC 1 cut(s) 19
AspLEI GCGC 1 cut(s) 179
Bbv12I GWGCWC 1 cut(s) 93
BbvCI CCTCAGC 1 cut(s) 141
BbvI GCAGC 1 cut(s) 6
BccI CCATC 1 cut(s) 20
BceAI ACGGC 1 cut(s) 239
BclI TGATCA 2 cut(s) 34, 115
BcoDI GTCTC 1 cut(s) 245
BfaI CTAG 2 cut(s) 23, 105
BisI GCNGC 1 cut(s) 20
BlsI GCNGC 1 cut(s) 21
BpmI CTGGAG 1 cut(s) 63
Bpu10I CCTNAGC 1 cut(s) 141
BpuEI CTTGAG 1 cut(s) 215
BseGI GGATG 1 cut(s) 198
BseMII CTCAG 1 cut(s) 132
BseRI GAGGAG 1 cut(s) 83
BseXI GCAGC 1 cut(s) 6
BsgI GTGCAG 1 cut(s) 225
BshFI GGCC 1 cut(s) 100
BsiHKAI GWGCWC 1 cut(s) 93
BsiSI CCGG 1 cut(s) 97
BsmAI GTCTC 1 cut(s) 245
BsnI GGCC 1 cut(s) 100
Bsp1286I GDGCHC 1 cut(s) 93
Bsp143I GATC 3 cut(s) 34, 115, 160
BspANI GGCC 1 cut(s) 100
BspCNI CTCAG 1 cut(s) 133
BspHI TCATGA 1 cut(s) 118
BssMI GATC 3 cut(s) 34, 115, 160
Bst4CI ACNGT 1 cut(s) 260
BstC8I GCNNGC 3 cut(s) 42, 102, 138
BstDEI CTNAG 2 cut(s) 141, 164
BstF5I GGATG 1 cut(s) 198
BstHHI GCGC 1 cut(s) 179
BstKTI GATC 3 cut(s) 37, 118, 163
BstMAI GTCTC 1 cut(s) 245
BstMBI GATC 3 cut(s) 34, 115, 160
BstMWI GCNNNNNNNGC 4 cut(s) 16, 28, 37, 97
BstNSI RCATGY 1 cut(s) 140
BstV1I GCAGC 1 cut(s) 6
BsuRI GGCC 1 cut(s) 100
BtsCI GGATG 1 cut(s) 198
Cac8I GCNNGC 3 cut(s) 42, 102, 138
CaiI CAGNNNCTG 1 cut(s) 86
CciI TCATGA 1 cut(s) 118
CfoI GCGC 1 cut(s) 179
CviAII CATG 2 cut(s) 119, 137
CviJI RGCY 6 cut(s) 19, 31, 40, 100, 147, 158
CviKI_1 RGCY 6 cut(s) 19, 31, 40, 100, 147, 158
DdeI CTNAG 2 cut(s) 141, 164
DpnI GATC 3 cut(s) 36, 117, 162
DpnII GATC 3 cut(s) 34, 115, 160
FaeI CATG 2 cut(s) 122, 140
FaiI YATR 3 cut(s) 120, 138, 219
FatI CATG 2 cut(s) 118, 136
FbaI TGATCA 2 cut(s) 34, 115
Fnu4HI GCNGC 1 cut(s) 20
FokI GGATG 1 cut(s) 185
Fsp4HI GCNGC 1 cut(s) 20
FspBI CTAG 2 cut(s) 23, 105
GlaI GCGC 1 cut(s) 178
GluI GCNGC 1 cut(s) 20
GsuI CTGGAG 1 cut(s) 63
HaeIII GGCC 1 cut(s) 100
HapII CCGG 1 cut(s) 97
HhaI GCGC 1 cut(s) 179
Hin1II CATG 2 cut(s) 122, 140
Hin6I GCGC 1 cut(s) 177
HinP1I GCGC 1 cut(s) 177
HinfI GANTC 1 cut(s) 83
HpaII CCGG 1 cut(s) 97
Hpy188III TCNNGA 3 cut(s) 80, 119, 232
HpyAV CCTTC 2 cut(s) 40, 176
HpyCH4III ACNGT 1 cut(s) 260
HpyCH4V TGCA 1 cut(s) 206
HpyF10VI GCNNNNNNNGC 4 cut(s) 16, 28, 37, 97
HpyF3I CTNAG 2 cut(s) 141, 164
Hsp92II CATG 2 cut(s) 122, 140
HspAI GCGC 1 cut(s) 177
Ksp22I TGATCA 2 cut(s) 34, 115
Kzo9I GATC 3 cut(s) 34, 115, 160
LmnI GCTCC 1 cut(s) 96
LpnPI CCDG 5 cut(s) 29, 84, 93, 110, 114
Lsp1109I GCAGC 1 cut(s) 6
MaeI CTAG 2 cut(s) 23, 105
MalI GATC 3 cut(s) 36, 117, 162
MboI GATC 3 cut(s) 34, 115, 160
MfeI CAATTG 1 cut(s) 126
MhlI GDGCHC 1 cut(s) 93
MluCI AATT 1 cut(s) 126
MlyI GAGTC 1 cut(s) 77
MnlI CCTC 3 cut(s) 104, 115, 136
MseI TTAA 1 cut(s) 150
MspA1I CMGCKG 1 cut(s) 19
MspI CCGG 1 cut(s) 97
MunI CAATTG 1 cut(s) 126
MwoI GCNNNNNNNGC 4 cut(s) 16, 28, 37, 97
NdeII GATC 3 cut(s) 34, 115, 160
NlaIII CATG 2 cut(s) 122, 140
NspI RCATGY 1 cut(s) 140
PaeI GCATGC 1 cut(s) 140
PagI TCATGA 1 cut(s) 118
PkrI GCNGC 1 cut(s) 21
PleI GAGTC 1 cut(s) 77
PpsI GAGTC 1 cut(s) 77
PstNI CAGNNNCTG 1 cut(s) 86
PvuII CAGCTG 1 cut(s) 19
SaqAI TTAA 1 cut(s) 150
SatI GCNGC 1 cut(s) 20
Sau3AI GATC 3 cut(s) 34, 115, 160
SchI GAGTC 1 cut(s) 77
SduI GDGCHC 1 cut(s) 93
SetI ASST 5 cut(s) 21, 42, 51, 73, 187
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
SphI GCATGC 1 cut(s) 140
Sse9I AATT 1 cut(s) 126
SspMI CTAG 2 cut(s) 23, 105
TaaI ACNGT 1 cut(s) 260
TasI AATT 1 cut(s) 126
Tru1I TTAA 1 cut(s) 150
Tru9I TTAA 1 cut(s) 150
TseI GCWGC 1 cut(s) 19
TspDTI ATGAA 1 cut(s) 234
TspGWI ACGGA 1 cut(s) 191
XceI RCATGY 1 cut(s) 140
XcmI CCANNNNNNNNNTGG 1 cut(s) 23
XspI CTAG 2 cut(s) 23, 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.