Rh5BG124500

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0017262
Physical Location & Seq
Reverse (-)
11789826 .. 11790164
339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG124500.1

Sequence Viewer

Length: 339 bp
ATGGAGATTCTTAAGATACATGCTGCTGGGATGGCCAAACACGGGGAAGTTGATTATGAGGCAATTGTCAAGCTTGCTGAGGGCTTCAATGGGGCTGATCTTCGGAATGTCTGCTCCGAAGCTGGAATGTTTGCCATCCGTGCTAAACAGGATTATGTTATGCAAGAAGATTTCATGAAGGCTGTGAGTAAATTGAACGAAGCCAAGCTTGAGATTAGTGTGCTCACTACAACTTTGGGAAAGAAAAGTGATGCCAACTCGGATTTGGATTATACACATTACGATATCTGTTTTTCTCATTTTGTAACTATGGTTGCTATATACTTATGTATGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

112

Amino Acids

12.53

Weight (kDa)

5.48

Isoelectric Point (pI)

21.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_lid_3 PF17862 16 - 60 8.3e-14 AAA+ lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 33
AfiI CCNNNNNNNGG 1 cut(s) 42
AflII CTTAAG 1 cut(s) 11
AgsI TTSAA 2 cut(s) 88, 196
AluBI AGCT 3 cut(s) 73, 122, 208
AluI AGCT 3 cut(s) 73, 122, 208
Alw21I GWGCWC 1 cut(s) 225
AoxI GGCC 1 cut(s) 33
ApeKI GCWGC 1 cut(s) 23
BalI TGGCCA 1 cut(s) 35
Bbv12I GWGCWC 1 cut(s) 225
BbvCI CCTCAGC 1 cut(s) 78
BbvI GCAGC 1 cut(s) 10
BccI CCATC 2 cut(s) 25, 143
BfrI CTTAAG 1 cut(s) 11
BisI GCNGC 1 cut(s) 24
BlsI GCNGC 1 cut(s) 25
BmsI GCATC 1 cut(s) 241
Bpu10I CCTNAGC 1 cut(s) 78
BpuEI CTTGAG 1 cut(s) 230
Bsc4I CCNNNNNNNGG 1 cut(s) 42
BseGI GGATG 2 cut(s) 36, 135
BseLI CCNNNNNNNGG 1 cut(s) 42
BseMII CTCAG 1 cut(s) 69
BseXI GCAGC 1 cut(s) 10
BseYI CCCAGC 1 cut(s) 26
BshFI GGCC 1 cut(s) 35
BsiHKAI GWGCWC 1 cut(s) 225
BslI CCNNNNNNNGG 1 cut(s) 42
BsnI GGCC 1 cut(s) 35
Bsp1286I GDGCHC 1 cut(s) 225
Bsp143I GATC 1 cut(s) 97
BspANI GGCC 1 cut(s) 35
BspCNI CTCAG 1 cut(s) 70
BspHI TCATGA 1 cut(s) 174
BspTI CTTAAG 1 cut(s) 11
BssMI GATC 1 cut(s) 97
BstAFI CTTAAG 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 75
BstDEI CTNAG 1 cut(s) 78
BstF5I GGATG 2 cut(s) 36, 135
BstKTI GATC 1 cut(s) 100
BstMBI GATC 1 cut(s) 97
BstMWI GCNNNNNNNGC 2 cut(s) 32, 140
BstNSI RCATGY 1 cut(s) 23
BstV1I GCAGC 1 cut(s) 10
BsuRI GGCC 1 cut(s) 35
BtsCI GGATG 2 cut(s) 36, 135
Cac8I GCNNGC 1 cut(s) 75
CciI TCATGA 1 cut(s) 174
CviAII CATG 2 cut(s) 20, 175
CviJI RGCY 8 cut(s) 35, 73, 84, 95, 122, 182, 203, 208
CviKI_1 RGCY 8 cut(s) 35, 73, 84, 95, 122, 182, 203, 208
DdeI CTNAG 1 cut(s) 78
DpnI GATC 1 cut(s) 99
DpnII GATC 1 cut(s) 97
EaeI YGGCCR 1 cut(s) 33
Eco32I GATATC 1 cut(s) 286
EcoRV GATATC 1 cut(s) 286
FaeI CATG 2 cut(s) 23, 178
FalI AAGNNNNNCTT 2 cut(s) 192, 224
FatI CATG 2 cut(s) 19, 174
Fnu4HI GCNGC 1 cut(s) 24
FokI GGATG 2 cut(s) 43, 122
Fsp4HI GCNGC 1 cut(s) 24
GluI GCNGC 1 cut(s) 24
GsaI CCCAGC 1 cut(s) 30
HaeIII GGCC 1 cut(s) 35
Hin1II CATG 2 cut(s) 23, 178
HindIII AAGCTT 2 cut(s) 71, 206
HinfI GANTC 1 cut(s) 7
Hpy188I TCNGA 3 cut(s) 105, 118, 262
Hpy188III TCNNGA 1 cut(s) 175
HpyAV CCTTC 1 cut(s) 172
HpyCH4V TGCA 1 cut(s) 163
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 140
HpyF3I CTNAG 1 cut(s) 78
Hsp92II CATG 2 cut(s) 23, 178
Kzo9I GATC 1 cut(s) 97
LmnI GCTCC 1 cut(s) 119
LpnPI CCDG 3 cut(s) 12, 108, 134
Lsp1109I GCAGC 1 cut(s) 10
LweI GCATC 1 cut(s) 241
MaeIII GTNAC 1 cut(s) 304
MalI GATC 1 cut(s) 99
MboI GATC 1 cut(s) 97
MboII GAAGA 2 cut(s) 92, 179
MfeI CAATTG 1 cut(s) 63
MhlI GDGCHC 1 cut(s) 225
MlsI TGGCCA 1 cut(s) 35
MluCI AATT 2 cut(s) 63, 191
MluNI TGGCCA 1 cut(s) 35
MnlI CCTC 2 cut(s) 52, 73
Mox20I TGGCCA 1 cut(s) 35
MscI TGGCCA 1 cut(s) 35
MseI TTAA 1 cut(s) 12
Msp20I TGGCCA 1 cut(s) 35
MspCI CTTAAG 1 cut(s) 11
MunI CAATTG 1 cut(s) 63
MwoI GCNNNNNNNGC 2 cut(s) 32, 140
NdeII GATC 1 cut(s) 97
NlaIII CATG 2 cut(s) 23, 178
NspI RCATGY 1 cut(s) 23
PagI TCATGA 1 cut(s) 174
PfeI GAWTC 1 cut(s) 7
PkrI GCNGC 1 cut(s) 25
PspFI CCCAGC 1 cut(s) 26
SaqAI TTAA 1 cut(s) 12
SatI GCNGC 1 cut(s) 24
Sau3AI GATC 1 cut(s) 97
SduI GDGCHC 1 cut(s) 225
SetI ASST 3 cut(s) 75, 124, 210
SfaNI GCATC 1 cut(s) 241
SmlI CTYRAG 2 cut(s) 11, 209
SmoI CTYRAG 2 cut(s) 11, 209
Sse9I AATT 2 cut(s) 63, 191
TasI AATT 2 cut(s) 63, 191
TfiI GAWTC 1 cut(s) 7
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TseI GCWGC 1 cut(s) 23
TspDTI ATGAA 2 cut(s) 163, 191
TspGWI ACGGA 1 cut(s) 128
Vha464I CTTAAG 1 cut(s) 11
XceI RCATGY 1 cut(s) 23
XcmI CCANNNNNNNNNTGG 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.