Rh6CG140500

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0017262
Physical Location & Seq
Reverse (-)
18165619 .. 18167698
2080 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG140500.1

Sequence Viewer

Length: 507 bp
ATGCTTCATGAAGATCCCGGTAATGTTAGCTACTCCGCTGTGGGAGGGCTAGGAGACCAGATCCGGGAGCTTAGGGAATCTATAGAGCTGCCTCTAATGAACCCTGAGCTCTTCCTTAGAGTTGGCATCAAACCACCCAAGGTGAAAATGATAATGGCAACAAATAGACCTGATGTTTTAGATCCTGCACTTCTCCGACCTGGGAGACTAGACCGGAAAATAGAGATTCCATTGCCTAATGAACAGTCAAGAATGGAAATTCTTAAAATTCATGCTGCTGGAATAGCTAAACATGGGGAAATTGATTATGAGGCAGTTGTGAAGCTTGCTGAGGGCTTTAACGGAGCAGATCTGCGGAATGTCTGCACTGAAGCTGGGATGTCTGCGATCCGTGCTGAACGCGATTATGTCATTCATGAAGACTTCATGAAGGCTGTAAGAAAATTGAACGAAGCCAAGAAGCTGGAATCAAGCGCACACTATAATGCTGATTTTGGAAAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030162 GO:0030163 GO:0030312 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033554 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0055044 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

168

Amino Acids

18.77

Weight (kDa)

6.0

Isoelectric Point (pI)

41.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 45 - 78 9.6e-07 ATPase family associated with various cellular activities (AAA)
AAA_lid_3 PF17862 101 - 143 3.9e-13 AAA+ lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 402
AciI CCGC 2 cut(s) 36, 355
AclWI GGATC 4 cut(s) 8, 55, 176, 382
AcsI RAATTY 2 cut(s) 258, 267
AcuI CTGAAG 1 cut(s) 390
AfiI CCNNNNNNNGG 1 cut(s) 64
AgsI TTSAA 1 cut(s) 448
AjnI CCWGG 1 cut(s) 199
AluBI AGCT 8 cut(s) 30, 70, 88, 109, 287, 325, 374, 463
AluI AGCT 8 cut(s) 30, 70, 88, 109, 287, 325, 374, 463
Alw21I GWGCWC 1 cut(s) 111
Alw26I GTCTC 2 cut(s) 48, 199
AlwI GGATC 4 cut(s) 8, 55, 176, 382
ApeKI GCWGC 2 cut(s) 88, 275
ApoI RAATTY 2 cut(s) 258, 267
AspLEI GCGC 1 cut(s) 476
AsuC2I CCSGG 2 cut(s) 18, 65
AsuHPI GGTGA 1 cut(s) 154
BanII GRGCYC 1 cut(s) 111
BbsI GAAGAC 1 cut(s) 426
Bbv12I GWGCWC 1 cut(s) 111
BbvCI CCTCAGC 1 cut(s) 330
BbvI GCAGC 2 cut(s) 75, 262
BciT130I CCWGG 1 cut(s) 201
BcnI CCSGG 2 cut(s) 18, 65
BcoDI GTCTC 2 cut(s) 48, 199
BfaI CTAG 2 cut(s) 50, 209
BfmI CTRYAG 1 cut(s) 81
BglII AGATCT 1 cut(s) 349
BisI GCNGC 2 cut(s) 89, 276
BlsI GCNGC 2 cut(s) 90, 277
Bme1390I CCNGG 3 cut(s) 18, 65, 201
BmrFI CCNGG 3 cut(s) 18, 65, 201
BmsI GCATC 1 cut(s) 135
BpiI GAAGAC 1 cut(s) 426
Bpu10I CCTNAGC 3 cut(s) 71, 105, 330
BpuMI CCSGG 2 cut(s) 18, 65
BsaI GGTCTC 1 cut(s) 48
BsaJI CCNNGG 2 cut(s) 138, 200
BsaWI WCCGGW 1 cut(s) 213
Bsc4I CCNNNNNNNGG 1 cut(s) 64
Bse3DI GCAATG 1 cut(s) 230
BseBI CCWGG 1 cut(s) 201
BseDI CCNNGG 2 cut(s) 138, 200
BseGI GGATG 1 cut(s) 384
BseLI CCNNNNNNNGG 1 cut(s) 64
BseMI GCAATG 1 cut(s) 230
BseMII CTCAG 2 cut(s) 96, 321
BseXI GCAGC 2 cut(s) 75, 262
BseYI CCCAGC 1 cut(s) 374
BsgI GTGCAG 2 cut(s) 171, 349
Bsh1236I CGCG 1 cut(s) 402
BsiHKAI GWGCWC 1 cut(s) 111
BsiSI CCGG 3 cut(s) 18, 64, 214
BslI CCNNNNNNNGG 1 cut(s) 64
BsmAI GTCTC 2 cut(s) 48, 199
Bso31I GGTCTC 1 cut(s) 48
Bsp1286I GDGCHC 1 cut(s) 111
Bsp143I GATC 5 cut(s) 13, 60, 181, 349, 387
BspACI CCGC 2 cut(s) 36, 355
BspCNI CTCAG 2 cut(s) 97, 322
BspFNI CGCG 1 cut(s) 402
BspHI TCATGA 3 cut(s) 7, 415, 426
BspPI GGATC 4 cut(s) 8, 55, 176, 382
BspQI GCTCTTC 1 cut(s) 116
BspTNI GGTCTC 1 cut(s) 48
BsrDI GCAATG 1 cut(s) 230
BssECI CCNNGG 2 cut(s) 138, 200
BssMI GATC 5 cut(s) 13, 60, 181, 349, 387
BssT1I CCWWGG 1 cut(s) 138
Bst2UI CCWGG 1 cut(s) 201
Bst4CI ACNGT 1 cut(s) 246
Bst6I CTCTTC 1 cut(s) 116
BstC8I GCNNGC 1 cut(s) 327
BstDEI CTNAG 4 cut(s) 71, 105, 116, 330
BstF5I GGATG 1 cut(s) 384
BstFNI CGCG 1 cut(s) 402
BstHHI GCGC 1 cut(s) 476
BstKTI GATC 5 cut(s) 16, 63, 184, 352, 390
BstMAI GTCTC 2 cut(s) 48, 199
BstMBI GATC 5 cut(s) 13, 60, 181, 349, 387
BstMWI GCNNNNNNNGC 2 cut(s) 284, 392
BstNI CCWGG 1 cut(s) 201
BstSCI CCNGG 3 cut(s) 16, 63, 199
BstSFI CTRYAG 1 cut(s) 81
BstUI CGCG 1 cut(s) 402
BstV1I GCAGC 2 cut(s) 75, 262
BstV2I GAAGAC 1 cut(s) 426
BstX2I RGATCY 4 cut(s) 13, 60, 181, 349
BstXI CCANNNNNNTGG 1 cut(s) 463
BstYI RGATCY 4 cut(s) 13, 60, 181, 349
BtsCI GGATG 1 cut(s) 384
BtsIMutI CAGTG 1 cut(s) 366
Cac8I GCNNGC 1 cut(s) 327
CciI TCATGA 3 cut(s) 7, 415, 426
CfoI GCGC 1 cut(s) 476
CviAII CATG 5 cut(s) 8, 272, 293, 416, 427
DdeI CTNAG 4 cut(s) 71, 105, 116, 330
DpnI GATC 5 cut(s) 15, 62, 183, 351, 389
DpnII GATC 5 cut(s) 13, 60, 181, 349, 387
Eam1104I CTCTTC 1 cut(s) 116
EarI CTCTTC 1 cut(s) 116
Ecl136II GAGCTC 1 cut(s) 109
Eco130I CCWWGG 1 cut(s) 138
Eco24I GRGCYC 1 cut(s) 111
Eco31I GGTCTC 1 cut(s) 48
Eco53kI GAGCTC 1 cut(s) 109
Eco57I CTGAAG 1 cut(s) 390
EcoICRI GAGCTC 1 cut(s) 109
EcoRII CCWGG 1 cut(s) 199
EcoT14I CCWWGG 1 cut(s) 138
EcoT38I GRGCYC 1 cut(s) 111
ErhI CCWWGG 1 cut(s) 138
FaeI CATG 5 cut(s) 11, 275, 296, 419, 430
FaiI YATR 9 cut(s) 9, 83, 273, 294, 309, 408, 417, 428, 483
FatI CATG 5 cut(s) 7, 271, 292, 415, 426
Fnu4HI GCNGC 2 cut(s) 89, 276
FokI GGATG 1 cut(s) 391
FriOI GRGCYC 1 cut(s) 111
Fsp4HI GCNGC 2 cut(s) 89, 276
FspBI CTAG 2 cut(s) 50, 209
GlaI GCGC 1 cut(s) 475
GluI GCNGC 2 cut(s) 89, 276
GsaI CCCAGC 1 cut(s) 378
HapII CCGG 3 cut(s) 18, 64, 214
HhaI GCGC 1 cut(s) 476
Hin1II CATG 5 cut(s) 11, 275, 296, 419, 430
Hin6I GCGC 1 cut(s) 474
HinP1I GCGC 1 cut(s) 474
HindIII AAGCTT 1 cut(s) 323
HinfI GANTC 3 cut(s) 77, 226, 467
HpaII CCGG 3 cut(s) 18, 64, 214
HphI GGTGA 1 cut(s) 154
Hpy188I TCNGA 1 cut(s) 197
Hpy188III TCNNGA 4 cut(s) 8, 249, 416, 427
HpyAV CCTTC 1 cut(s) 424
HpyCH4III ACNGT 1 cut(s) 246
HpyCH4V TGCA 2 cut(s) 188, 366
HpyF10VI GCNNNNNNNGC 2 cut(s) 284, 392
HpyF3I CTNAG 4 cut(s) 71, 105, 116, 330
Hsp92II CATG 5 cut(s) 11, 275, 296, 419, 430
HspAI GCGC 1 cut(s) 474
Kzo9I GATC 5 cut(s) 13, 60, 181, 349, 387
LguI GCTCTTC 1 cut(s) 116
LmnI GCTCC 2 cut(s) 67, 344
Lsp1109I GCAGC 2 cut(s) 75, 262
LweI GCATC 1 cut(s) 135
MaeI CTAG 2 cut(s) 50, 209
MalI GATC 5 cut(s) 15, 62, 183, 351, 389
MboI GATC 5 cut(s) 13, 60, 181, 349, 387
MboII GAAGA 3 cut(s) 23, 103, 431
MflI RGATCY 4 cut(s) 13, 60, 181, 349
MhlI GDGCHC 1 cut(s) 111
MluCI AATT 4 cut(s) 258, 267, 300, 443
MmeI TCCRAC 1 cut(s) 220
MnlI CCTC 4 cut(s) 38, 102, 304, 325
MseI TTAA 2 cut(s) 264, 339
MslI CAYNNNNRTG 1 cut(s) 483
MspA1I CMGCKG 1 cut(s) 38
MspI CCGG 3 cut(s) 18, 64, 214
MspR9I CCNGG 3 cut(s) 18, 65, 201
MvaI CCWGG 1 cut(s) 201
MvnI CGCG 1 cut(s) 402
MwoI GCNNNNNNNGC 2 cut(s) 284, 392
NciI CCSGG 2 cut(s) 18, 65
NdeII GATC 5 cut(s) 13, 60, 181, 349, 387
NlaIII CATG 5 cut(s) 11, 275, 296, 419, 430
PagI TCATGA 3 cut(s) 7, 415, 426
PciSI GCTCTTC 1 cut(s) 116
PfeI GAWTC 3 cut(s) 77, 226, 467
PfoI TCCNGGA 1 cut(s) 63
PkrI GCNGC 2 cut(s) 90, 277
Psp124BI GAGCTC 1 cut(s) 111
Psp6I CCWGG 1 cut(s) 199
PspFI CCCAGC 1 cut(s) 374
PspGI CCWGG 1 cut(s) 199
PsuI RGATCY 4 cut(s) 13, 60, 181, 349
RseI CAYNNNNRTG 1 cut(s) 483
SacI GAGCTC 1 cut(s) 111
SapI GCTCTTC 1 cut(s) 116
SaqAI TTAA 2 cut(s) 264, 339
SatI GCNGC 2 cut(s) 89, 276
Sau3AI GATC 5 cut(s) 13, 60, 181, 349, 387
ScrFI CCNGG 3 cut(s) 18, 65, 201
SduI GDGCHC 1 cut(s) 111
SfaNI GCATC 1 cut(s) 135
SfcI CTRYAG 1 cut(s) 81
SmiMI CAYNNNNRTG 1 cut(s) 483
Sse9I AATT 4 cut(s) 258, 267, 300, 443
SsiI CCGC 2 cut(s) 36, 355
SspMI CTAG 2 cut(s) 50, 209
SstI GAGCTC 1 cut(s) 111
StyD4I CCNGG 3 cut(s) 16, 63, 199
StyI CCWWGG 1 cut(s) 138
TaaI ACNGT 1 cut(s) 246
TasI AATT 4 cut(s) 258, 267, 300, 443
TfiI GAWTC 3 cut(s) 77, 226, 467
Tru1I TTAA 2 cut(s) 264, 339
Tru9I TTAA 2 cut(s) 264, 339
TscAI CASTG 1 cut(s) 373
TseI GCWGC 2 cut(s) 88, 275
TspDTI ATGAA 8 cut(s) 24, 113, 255, 260, 404, 415, 432, 443
TspGWI ACGGA 2 cut(s) 357, 380
TspRI CASTG 1 cut(s) 373
XapI RAATTY 2 cut(s) 258, 267
XspI CTAG 2 cut(s) 50, 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.