Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0017262

Physical Location & Seq

Genomic Coordinates Forward (+)

85240159 .. 85242111

Gene Structure 1953 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG622400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGTGTCTTGTGCCTCTTCCCCCAGATGGTTATGACCCTCCAGTCCATTGGCCCGACAGTAAAGAGAAGATATTGTATAAGAATGTGGAGCATCCAAAGCTTGCTGCATTCGTCAAGGAACATACTTGGGTGATGGAGTCTGGAGAATACCTTACTTTTCCTCAAAACCAGTCTGAGATTAAGGGTGGGGTTCTTCACTATCTTGAGTCCATTGAAGAGATGGTACCAGATCTCGAATGGGGAAAGAATATCCGTGTAGTGCTGGATATCGGAGTGGATCCTGAGATTCCATTGCCTAATGAACAGTCAAGAATGGAAATTCTTAAAATTCATGCTGCTGGAATAGCTAAACATGGGGAAATTGATTATGAGGCAGTTGTGAAGCTTGCTGAGGGCTTTAACGGAGCAGATCTGTGGAATGTCTGCACTGAAGCTGGGATGTCTGCGATCCGTGCTGAACTCGATTATGTCATTCATGAAGACTTCATGAAGATTTGCTGCAGCCCTCTTGCAACAAAAGGTTTGGGTGATGAATGTGGTCCCTGTCCATGCACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0012505 GO:0016740 GO:0016741 GO:0031410 GO:0031982 GO:0031984 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

185

Amino Acids

20.62

Weight (kDa)

4.69

Isoelectric Point (pI)

49.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_29	PF03141	1 - 92	3.4e-28	Putative S-adenosyl-L-methionine-dependent methyltransferase
AAA_lid_3	PF17862	121 - 163	3.3e-12	AAA+ lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0017262)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g10181
rosa_chinensis	RchiOBHm_Chr5g0016371
rosa_multiflora	Rmu_co8412837.1_g000001
rosa_roxburghii	Rroxscaffold_4G00308300
rosa_samantha	Rh2DG622400 Rh5AG125500 Rh5BG124500 Rh5CG136700 Rh5DG124200 Rh6AG143400 Rh6BG143900 Rh6CG140500 Rh6DG128100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	41
Acc65I	GGTACC	1 cut(s)	223
AccB1I	GGYRCC	1 cut(s)	223
AclWI	GGATC	3 cut(s)	272, 285, 442
AcsI	RAATTY	2 cut(s)	318, 327
AcuI	CTGAAG	1 cut(s)	450
AfaI	GTAC	1 cut(s)	225
AfiI	CCNNNNNNNGG	1 cut(s)	26
AgsI	TTSAA	1 cut(s)	215
AluBI	AGCT	4 cut(s)	100, 347, 385, 434
AluI	AGCT	4 cut(s)	100, 347, 385, 434
AlwI	GGATC	3 cut(s)	272, 285, 442
AoxI	GGCC	1 cut(s)	50
ApeKI	GCWGC	4 cut(s)	104, 335, 498, 501
ApoI	RAATTY	2 cut(s)	318, 327
Asp718I	GGTACC	1 cut(s)	223
AspS9I	GGNCC	2 cut(s)	51, 539
AsuHPI	GGTGA	2 cut(s)	142, 539
AvaII	GGWCC	1 cut(s)	539
BamHI	GGATCC	1 cut(s)	277
BanI	GGYRCC	1 cut(s)	223
BarI	GAAGNNNNNNTAC	2 cut(s)	207, 239
BbsI	GAAGAC	1 cut(s)	486
BbvCI	CCTCAGC	1 cut(s)	390
BbvI	GCAGC	4 cut(s)	91, 322, 485, 513
BccI	CCATC	3 cut(s)	20, 127, 214
BfmI	CTRYAG	1 cut(s)	499
BglII	AGATCT	2 cut(s)	229, 409
BisI	GCNGC	4 cut(s)	105, 336, 499, 502
BlsI	GCNGC	4 cut(s)	106, 337, 500, 503
Bme18I	GGWCC	1 cut(s)	539
BmgT120I	GGNCC	2 cut(s)	51, 539
BmiI	GGNNCC	3 cut(s)	225, 279, 541
BmsI	GCATC	1 cut(s)	100
BpiI	GAAGAC	1 cut(s)	486
BpmI	CTGGAG	2 cut(s)	24, 162
Bpu10I	CCTNAGC	1 cut(s)	390
BpuEI	CTTGAG	1 cut(s)	224
Bsc4I	CCNNNNNNNGG	1 cut(s)	26
Bse1I	ACTGG	2 cut(s)	41, 169
Bse3DI	GCAATG	1 cut(s)	290
BseGI	GGATG	2 cut(s)	91, 444
BseLI	CCNNNNNNNGG	1 cut(s)	26
BseMI	GCAATG	1 cut(s)	290
BseMII	CTCAG	3 cut(s)	165, 273, 381
BseNI	ACTGG	2 cut(s)	41, 169
BseXI	GCAGC	4 cut(s)	91, 322, 485, 513
BseYI	CCCAGC	1 cut(s)	434
BsgI	GTGCAG	1 cut(s)	409
BshFI	GGCC	1 cut(s)	52
BshNI	GGYRCC	1 cut(s)	223
BslFI	GGGAC	1 cut(s)	525
BslI	CCNNNNNNNGG	1 cut(s)	26
BsmFI	GGGAC	1 cut(s)	525
BsmI	GAATGC	1 cut(s)	107
BsnI	GGCC	1 cut(s)	52
Bsp143I	GATC	4 cut(s)	229, 277, 409, 447
BspANI	GGCC	1 cut(s)	52
BspCNI	CTCAG	3 cut(s)	166, 274, 382
BspHI	TCATGA	2 cut(s)	475, 486
BspLI	GGNNCC	3 cut(s)	225, 279, 541
BspMAI	CTGCAG	1 cut(s)	503
BspPI	GGATC	3 cut(s)	272, 285, 442
BspT107I	GGYRCC	1 cut(s)	223
BsrDI	GCAATG	1 cut(s)	290
BsrI	ACTGG	2 cut(s)	41, 169
BssMI	GATC	4 cut(s)	229, 277, 409, 447
Bst4CI	ACNGT	2 cut(s)	59, 306
Bst6I	CTCTTC	2 cut(s)	21, 210
BstC8I	GCNNGC	2 cut(s)	102, 387
BstDEI	CTNAG	3 cut(s)	174, 282, 390
BstF5I	GGATG	2 cut(s)	91, 444
BstKTI	GATC	4 cut(s)	232, 280, 412, 450
BstMBI	GATC	4 cut(s)	229, 277, 409, 447
BstMWI	GCNNNNNNNGC	3 cut(s)	97, 344, 452
BstSFI	CTRYAG	1 cut(s)	499
BstV1I	GCAGC	4 cut(s)	91, 322, 485, 513
BstV2I	GAAGAC	1 cut(s)	486
BstX2I	RGATCY	3 cut(s)	229, 277, 409
BstXI	CCANNNNNNTGG	1 cut(s)	48
BstYI	RGATCY	3 cut(s)	229, 277, 409
BsuRI	GGCC	1 cut(s)	52
BtsCI	GGATG	2 cut(s)	91, 444
BtsIMutI	CAGTG	1 cut(s)	426
Cac8I	GCNNGC	2 cut(s)	102, 387
CciI	TCATGA	2 cut(s)	475, 486
Cfr13I	GGNCC	2 cut(s)	51, 539
Csp6I	GTAC	1 cut(s)	224
CviAII	CATG	5 cut(s)	332, 353, 476, 487, 549
CviJI	RGCY	7 cut(s)	52, 100, 347, 385, 396, 434, 504
CviKI_1	RGCY	7 cut(s)	52, 100, 347, 385, 396, 434, 504
CviQI	GTAC	1 cut(s)	224
DdeI	CTNAG	3 cut(s)	174, 282, 390
DpnI	GATC	4 cut(s)	231, 279, 411, 449
DpnII	GATC	4 cut(s)	229, 277, 409, 447
DrdI	GACNNNNNNGTC	1 cut(s)	41
DseDI	GACNNNNNNGTC	1 cut(s)	41
Eam1104I	CTCTTC	2 cut(s)	21, 210
EarI	CTCTTC	2 cut(s)	21, 210
Eco32I	GATATC	1 cut(s)	268
Eco47I	GGWCC	1 cut(s)	539
Eco57I	CTGAAG	1 cut(s)	450
EcoRV	GATATC	1 cut(s)	268
FaeI	CATG	5 cut(s)	335, 356, 479, 490, 552
FaqI	GGGAC	1 cut(s)	525
FatI	CATG	5 cut(s)	331, 352, 475, 486, 548
Fnu4HI	GCNGC	4 cut(s)	105, 336, 499, 502
FokI	GGATG	2 cut(s)	78, 451
Fsp4HI	GCNGC	4 cut(s)	105, 336, 499, 502
GluI	GCNGC	4 cut(s)	105, 336, 499, 502
GsaI	CCCAGC	1 cut(s)	438
GsuI	CTGGAG	2 cut(s)	24, 162
HaeIII	GGCC	1 cut(s)	52
Hin1II	CATG	5 cut(s)	335, 356, 479, 490, 552
HindIII	AAGCTT	2 cut(s)	98, 383
HinfI	GANTC	3 cut(s)	137, 206, 286
HphI	GGTGA	2 cut(s)	142, 539
Hpy188I	TCNGA	2 cut(s)	175, 272
Hpy188III	TCNNGA	7 cut(s)	141, 203, 233, 281, 309, 476, 487
HpyCH4III	ACNGT	2 cut(s)	59, 306
HpyCH4V	TGCA	5 cut(s)	107, 426, 501, 512, 552
HpyF10VI	GCNNNNNNNGC	3 cut(s)	97, 344, 452
HpyF3I	CTNAG	3 cut(s)	174, 282, 390
Hsp92II	CATG	5 cut(s)	335, 356, 479, 490, 552
KpnI	GGTACC	1 cut(s)	227
Kzo9I	GATC	4 cut(s)	229, 277, 409, 447
LmnI	GCTCC	2 cut(s)	88, 404
LpnPI	CCDG	9 cut(s)	36, 54, 126, 182, 240, 248, 294, 324, 420
Lsp1109I	GCAGC	4 cut(s)	91, 322, 485, 513
LweI	GCATC	1 cut(s)	100
MalI	GATC	4 cut(s)	231, 279, 411, 449
MboI	GATC	4 cut(s)	229, 277, 409, 447
MboII	GAAGA	6 cut(s)	8, 79, 185, 227, 491, 502
MflI	RGATCY	3 cut(s)	229, 277, 409
MluCI	AATT	3 cut(s)	318, 327, 360
MlyI	GAGTC	2 cut(s)	146, 215
MnlI	CCTC	6 cut(s)	24, 48, 171, 364, 385, 516
MseI	TTAA	3 cut(s)	180, 324, 399
Mva1269I	GAATGC	1 cut(s)	107
MwoI	GCNNNNNNNGC	3 cut(s)	97, 344, 452
NdeII	GATC	4 cut(s)	229, 277, 409, 447
NlaIII	CATG	5 cut(s)	335, 356, 479, 490, 552
NlaIV	GGNNCC	3 cut(s)	225, 279, 541
PagI	TCATGA	2 cut(s)	475, 486
PctI	GAATGC	1 cut(s)	107
PfeI	GAWTC	1 cut(s)	286
PkrI	GCNGC	4 cut(s)	106, 337, 500, 503
PleI	GAGTC	2 cut(s)	145, 214
PpsI	GAGTC	2 cut(s)	145, 214
PspFI	CCCAGC	1 cut(s)	434
PspN4I	GGNNCC	3 cut(s)	225, 279, 541
PspPI	GGNCC	2 cut(s)	51, 539
PstI	CTGCAG	1 cut(s)	503
PsuI	RGATCY	3 cut(s)	229, 277, 409
RsaI	GTAC	1 cut(s)	225
RsaNI	GTAC	1 cut(s)	224
SaqAI	TTAA	3 cut(s)	180, 324, 399
SatI	GCNGC	4 cut(s)	105, 336, 499, 502
Sau3AI	GATC	4 cut(s)	229, 277, 409, 447
Sau96I	GGNCC	2 cut(s)	51, 539
SchI	GAGTC	2 cut(s)	146, 215
SetI	ASST	7 cut(s)	102, 153, 349, 387, 436, 523, 557
SfaNI	GCATC	1 cut(s)	100
SfcI	CTRYAG	1 cut(s)	499
SinI	GGWCC	1 cut(s)	539
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	3 cut(s)	318, 327, 360
TaaI	ACNGT	2 cut(s)	59, 306
TaqI	TCGA	2 cut(s)	234, 462
TasI	AATT	3 cut(s)	318, 327, 360
TfiI	GAWTC	1 cut(s)	286
Tru1I	TTAA	3 cut(s)	180, 324, 399
Tru9I	TTAA	3 cut(s)	180, 324, 399
TscAI	CASTG	1 cut(s)	433
TseI	GCWGC	4 cut(s)	104, 335, 498, 501
TspDTI	ATGAA	7 cut(s)	315, 320, 464, 475, 492, 503, 546
TspGWI	ACGGA	3 cut(s)	242, 417, 440
TspRI	CASTG	1 cut(s)	433
VpaK11BI	GGWCC	1 cut(s)	539
XapI	RAATTY	2 cut(s)	318, 327
XcmI	CCANNNNNNNNNTGG	2 cut(s)	217, 234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.