Rmu_co8412837.1_g000001

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8412837.1
OG0017262
Physical Location & Seq
Reverse (-)
1 .. 1352
1352 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8412837.1_g000001.1.cds

Sequence Viewer

Length: 603 bp
ggtgttcttctctatggacctccgggtacagggaagacattgctagccagagcaattgcgagcaacatagatgctaactttctaaaggttgtatcaagcgccattattgataagtacattggtgaaagtgcaagattgataagggaaatgtttggttatgctcgtgatcaccagccctgtatcatttttatggatgagatcgatgccatcggtggacggcgttttagcgaagggaccagtgcagaccgtgaaatccagcgaacactcatggagttgcttaaccagttagatggatttgatcaacttgggaaggtgaaaatgataatggcaacaaatagacctgatgttttagatcctgcacttctccgacctgggagactagaccggaaaatagagattccattgcctaatgaacagtcaagaatggaaattcttaaaattcatgctgctggaatagctaaacatggggaaattgattatgaggcagttgtgaagcttgctgagggctttaacggagcagatctgcggaatgtctgcactgaagctgggatgtctgcgatccgtgctgaacgcgattatgtcattcatgaagacttcatgaag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030162 GO:0030163 GO:0030312 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033554 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0055044 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

201

Amino Acids

22.33

Weight (kDa)

5.64

Isoelectric Point (pI)

35.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 573
AciI CCGC 1 cut(s) 526
AclWI GGATC 2 cut(s) 347, 553
AcsI RAATTY 2 cut(s) 429, 438
AcuI CTGAAG 1 cut(s) 561
AfaI GTAC 2 cut(s) 28, 116
AfiI CCNNNNNNNGG 1 cut(s) 29
AjnI CCWGG 1 cut(s) 370
AluBI AGCT 3 cut(s) 458, 496, 545
AluI AGCT 3 cut(s) 458, 496, 545
Alw26I GTCTC 1 cut(s) 370
AlwI GGATC 2 cut(s) 347, 553
ApeKI GCWGC 1 cut(s) 446
ApoI RAATTY 2 cut(s) 429, 438
AspLEI GCGC 1 cut(s) 101
AspS9I GGNCC 2 cut(s) 17, 234
AsuC2I CCSGG 1 cut(s) 24
AsuHPI GGTGA 3 cut(s) 134, 161, 325
AsuNHI GCTAGC 1 cut(s) 43
AvaII GGWCC 2 cut(s) 17, 234
BauI CACGAG 1 cut(s) 162
BbsI GAAGAC 2 cut(s) 41, 597
BbvCI CCTCAGC 1 cut(s) 501
BbvI GCAGC 1 cut(s) 433
BccI CCATC 2 cut(s) 215, 284
BceAI ACGGC 1 cut(s) 233
BciT130I CCWGG 1 cut(s) 372
BclI TGATCA 2 cut(s) 166, 298
BcnI CCSGG 1 cut(s) 24
BcoDI GTCTC 1 cut(s) 370
BfaI CTAG 2 cut(s) 44, 380
BfoI RGCGCY 1 cut(s) 102
BglII AGATCT 1 cut(s) 520
BisI GCNGC 1 cut(s) 447
BlsI GCNGC 1 cut(s) 448
Bme1390I CCNGG 2 cut(s) 24, 372
Bme18I GGWCC 2 cut(s) 17, 234
BmgT120I GGNCC 2 cut(s) 17, 234
BmiI GGNNCC 1 cut(s) 235
BmrFI CCNGG 2 cut(s) 24, 372
BmsI GCATC 2 cut(s) 61, 193
BmtI GCTAGC 1 cut(s) 47
BpiI GAAGAC 2 cut(s) 41, 597
Bpu10I CCTNAGC 1 cut(s) 501
BpuMI CCSGG 1 cut(s) 24
Bsa29I ATCGAT 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 371
BsaWI WCCGGW 1 cut(s) 384
Bsc4I CCNNNNNNNGG 1 cut(s) 29
Bse1I ACTGG 2 cut(s) 237, 283
Bse3DI GCAATG 2 cut(s) 38, 401
BseBI CCWGG 1 cut(s) 372
BseCI ATCGAT 1 cut(s) 201
BseDI CCNNGG 1 cut(s) 371
BseGI GGATG 2 cut(s) 199, 555
BseLI CCNNNNNNNGG 1 cut(s) 29
BseMI GCAATG 2 cut(s) 38, 401
BseMII CTCAG 1 cut(s) 492
BseNI ACTGG 2 cut(s) 237, 283
BseXI GCAGC 1 cut(s) 433
BseYI CCCAGC 1 cut(s) 545
BsgI GTGCAG 3 cut(s) 261, 342, 520
Bsh1236I CGCG 1 cut(s) 573
BshVI ATCGAT 1 cut(s) 201
BsiSI CCGG 2 cut(s) 23, 385
BslFI GGGAC 1 cut(s) 247
BslI CCNNNNNNNGG 1 cut(s) 29
BsmAI GTCTC 1 cut(s) 370
BsmFI GGGAC 1 cut(s) 247
Bsp143I GATC 6 cut(s) 166, 198, 298, 352, 520, 558
BspACI CCGC 1 cut(s) 526
BspCNI CTCAG 1 cut(s) 493
BspDI ATCGAT 1 cut(s) 201
BspFNI CGCG 1 cut(s) 573
BspHI TCATGA 2 cut(s) 586, 597
BspLI GGNNCC 1 cut(s) 235
BspOI GCTAGC 1 cut(s) 47
BspPI GGATC 2 cut(s) 347, 553
BsrDI GCAATG 2 cut(s) 38, 401
BsrI ACTGG 2 cut(s) 237, 283
BssECI CCNNGG 1 cut(s) 371
BssMI GATC 6 cut(s) 166, 198, 298, 352, 520, 558
BssSI CACGAG 1 cut(s) 162
Bst2BI CACGAG 1 cut(s) 162
Bst2UI CCWGG 1 cut(s) 372
Bst4CI ACNGT 2 cut(s) 248, 417
BstC8I GCNNGC 3 cut(s) 45, 61, 498
BstDEI CTNAG 1 cut(s) 501
BstF5I GGATG 2 cut(s) 199, 555
BstFNI CGCG 1 cut(s) 573
BstH2I RGCGCY 1 cut(s) 102
BstHHI GCGC 1 cut(s) 101
BstKTI GATC 6 cut(s) 169, 201, 301, 355, 523, 561
BstMAI GTCTC 1 cut(s) 370
BstMBI GATC 6 cut(s) 166, 198, 298, 352, 520, 558
BstMWI GCNNNNNNNGC 2 cut(s) 455, 563
BstNI CCWGG 1 cut(s) 372
BstSCI CCNGG 2 cut(s) 22, 370
BstUI CGCG 1 cut(s) 573
BstV1I GCAGC 1 cut(s) 433
BstV2I GAAGAC 2 cut(s) 41, 597
BstX2I RGATCY 2 cut(s) 352, 520
BstXI CCANNNNNNTGG 1 cut(s) 290
BstYI RGATCY 2 cut(s) 352, 520
Bsu15I ATCGAT 1 cut(s) 201
BsuTUI ATCGAT 1 cut(s) 201
BtsCI GGATG 2 cut(s) 199, 555
BtsIMutI CAGTG 2 cut(s) 244, 537
Cac8I GCNNGC 3 cut(s) 45, 61, 498
CciI TCATGA 2 cut(s) 586, 597
CfoI GCGC 1 cut(s) 101
Cfr13I GGNCC 2 cut(s) 17, 234
ClaI ATCGAT 1 cut(s) 201
Csp6I GTAC 2 cut(s) 27, 115
CviAII CATG 5 cut(s) 268, 443, 464, 587, 598
CviJI RGCY 6 cut(s) 47, 175, 458, 496, 507, 545
CviKI_1 RGCY 6 cut(s) 47, 175, 458, 496, 507, 545
CviQI GTAC 2 cut(s) 27, 115
DdeI CTNAG 1 cut(s) 501
DpnI GATC 6 cut(s) 168, 200, 300, 354, 522, 560
DpnII GATC 6 cut(s) 166, 198, 298, 352, 520, 558
Eco47I GGWCC 2 cut(s) 17, 234
Eco57I CTGAAG 1 cut(s) 561
EcoRII CCWGG 1 cut(s) 370
FaeI CATG 5 cut(s) 271, 446, 467, 590, 601
FaqI GGGAC 1 cut(s) 247
FatI CATG 5 cut(s) 267, 442, 463, 586, 597
FbaI TGATCA 2 cut(s) 166, 298
Fnu4HI GCNGC 1 cut(s) 447
FokI GGATG 2 cut(s) 206, 562
Fsp4HI GCNGC 1 cut(s) 447
FspBI CTAG 2 cut(s) 44, 380
GlaI GCGC 1 cut(s) 100
GluI GCNGC 1 cut(s) 447
GsaI CCCAGC 1 cut(s) 549
HaeII RGCGCY 1 cut(s) 102
HapII CCGG 2 cut(s) 23, 385
HhaI GCGC 1 cut(s) 101
Hin1II CATG 5 cut(s) 271, 446, 467, 590, 601
Hin6I GCGC 1 cut(s) 99
HinP1I GCGC 1 cut(s) 99
HindIII AAGCTT 1 cut(s) 494
HinfI GANTC 1 cut(s) 397
HpaII CCGG 2 cut(s) 23, 385
HphI GGTGA 3 cut(s) 134, 161, 325
Hpy166II GTNNAC 1 cut(s) 215
Hpy188I TCNGA 1 cut(s) 368
Hpy188III TCNNGA 4 cut(s) 164, 420, 587, 598
Hpy8I GTNNAC 1 cut(s) 215
HpyAV CCTTC 2 cut(s) 224, 304
HpyCH4III ACNGT 2 cut(s) 248, 417
HpyCH4V TGCA 4 cut(s) 131, 242, 359, 537
HpyF10VI GCNNNNNNNGC 2 cut(s) 455, 563
HpyF3I CTNAG 1 cut(s) 501
Hsp92II CATG 5 cut(s) 271, 446, 467, 590, 601
HspAI GCGC 1 cut(s) 99
Ksp22I TGATCA 2 cut(s) 166, 298
Kzo9I GATC 6 cut(s) 166, 198, 298, 352, 520, 558
LmnI GCTCC 1 cut(s) 515
Lsp1109I GCAGC 1 cut(s) 433
LweI GCATC 2 cut(s) 61, 193
MaeI CTAG 2 cut(s) 44, 380
MalI GATC 6 cut(s) 168, 200, 300, 354, 522, 560
MboI GATC 6 cut(s) 166, 198, 298, 352, 520, 558
MboII GAAGA 2 cut(s) 46, 602
MfeI CAATTG 1 cut(s) 54
MflI RGATCY 2 cut(s) 352, 520
MluCI AATT 4 cut(s) 54, 429, 438, 471
MmeI TCCRAC 1 cut(s) 391
MnlI CCTC 3 cut(s) 30, 475, 496
MseI TTAA 3 cut(s) 279, 435, 510
MslI CAYNNNNRTG 1 cut(s) 188
MspI CCGG 2 cut(s) 23, 385
MspR9I CCNGG 2 cut(s) 24, 372
MunI CAATTG 1 cut(s) 54
MvaI CCWGG 1 cut(s) 372
MvnI CGCG 1 cut(s) 573
MwoI GCNNNNNNNGC 2 cut(s) 455, 563
NciI CCSGG 1 cut(s) 24
NdeII GATC 6 cut(s) 166, 198, 298, 352, 520, 558
NheI GCTAGC 1 cut(s) 43
NlaIII CATG 5 cut(s) 271, 446, 467, 590, 601
NlaIV GGNNCC 1 cut(s) 235
PagI TCATGA 2 cut(s) 586, 597
PfeI GAWTC 1 cut(s) 397
PkrI GCNGC 1 cut(s) 448
Psp6I CCWGG 1 cut(s) 370
PspFI CCCAGC 1 cut(s) 545
PspGI CCWGG 1 cut(s) 370
PspN4I GGNNCC 1 cut(s) 235
PspPI GGNCC 2 cut(s) 17, 234
PsuI RGATCY 2 cut(s) 352, 520
RsaI GTAC 2 cut(s) 28, 116
RsaNI GTAC 2 cut(s) 27, 115
RseI CAYNNNNRTG 1 cut(s) 188
SaqAI TTAA 3 cut(s) 279, 435, 510
SatI GCNGC 1 cut(s) 447
Sau3AI GATC 6 cut(s) 166, 198, 298, 352, 520, 558
Sau96I GGNCC 2 cut(s) 17, 234
ScrFI CCNGG 2 cut(s) 24, 372
SetI ASST 8 cut(s) 22, 90, 315, 343, 373, 460, 498, 547
SfaNI GCATC 2 cut(s) 61, 193
SinI GGWCC 2 cut(s) 17, 234
SmiMI CAYNNNNRTG 1 cut(s) 188
Sse9I AATT 4 cut(s) 54, 429, 438, 471
SsiI CCGC 1 cut(s) 526
SspMI CTAG 2 cut(s) 44, 380
StyD4I CCNGG 2 cut(s) 22, 370
TaaI ACNGT 2 cut(s) 248, 417
TaqI TCGA 1 cut(s) 201
TasI AATT 4 cut(s) 54, 429, 438, 471
TatI WGTACW 1 cut(s) 114
TfiI GAWTC 1 cut(s) 397
Tru1I TTAA 3 cut(s) 279, 435, 510
Tru9I TTAA 3 cut(s) 279, 435, 510
TscAI CASTG 2 cut(s) 244, 544
TseI GCWGC 1 cut(s) 446
TspDTI ATGAA 5 cut(s) 426, 431, 575, 586, 603
TspGWI ACGGA 2 cut(s) 528, 551
TspRI CASTG 2 cut(s) 244, 544
VpaK11BI GGWCC 2 cut(s) 17, 234
XapI RAATTY 2 cut(s) 429, 438
XspI CTAG 2 cut(s) 44, 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.