RchiOBHm_Chr5g0016371

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0017262
Physical Location & Seq
Reverse (-)
11283932 .. 11284183
252 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29675

Sequence Viewer

Length: 252 bp
ATGGCCAAACACGAGGATGTTTATTATGAGGCAATTGTCAAGTTTGCTGAGGGCTTCAATGGGGCTGATCTTCAGACTCTCTGCCCCGAAGCTGGAATGTTTGCCATCCATGCTCAACGGGATTATAAATGTCATGCAAGAAGATATCTGTTTTTCTCATTTGGTAACTATGGTTGCTATATACCTATGTATGAGATGATTCAGGAGTTATTTGCTTCGGAAGCTCTTTCATTCAGCTACCTCAGGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030162 GO:0030163 GO:0030312 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033554 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0055044 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

83

Amino Acids

9.7

Weight (kDa)

5.47

Isoelectric Point (pI)

34.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_lid_3 PF17862 6 - 41 4.4e-08 AAA+ lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 126
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 56
AfiI CCNNNNNNNGG 1 cut(s) 92
AgsI TTSAA 1 cut(s) 58
AluBI AGCT 3 cut(s) 92, 224, 237
AluI AGCT 3 cut(s) 92, 224, 237
AoxI GGCC 1 cut(s) 3
AxyI CCTNAGG 1 cut(s) 242
BalI TGGCCA 1 cut(s) 5
BauI CACGAG 1 cut(s) 11
BbvCI CCTCAGC 1 cut(s) 48
BccI CCATC 1 cut(s) 113
Bpu10I CCTNAGC 1 cut(s) 48
Bsc4I CCNNNNNNNGG 1 cut(s) 92
Bse21I CCTNAGG 1 cut(s) 242
BseGI GGATG 2 cut(s) 22, 105
BseLI CCNNNNNNNGG 1 cut(s) 92
BseMII CTCAG 1 cut(s) 39
BshFI GGCC 1 cut(s) 5
BslI CCNNNNNNNGG 1 cut(s) 92
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 1 cut(s) 67
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 40
BssMI GATC 1 cut(s) 67
BssSI CACGAG 1 cut(s) 11
Bst2BI CACGAG 1 cut(s) 11
BstDEI CTNAG 2 cut(s) 48, 242
BstF5I GGATG 2 cut(s) 22, 105
BstKTI GATC 1 cut(s) 70
BstMBI GATC 1 cut(s) 67
BstMWI GCNNNNNNNGC 2 cut(s) 110, 221
Bsu36I CCTNAGG 1 cut(s) 242
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 2 cut(s) 22, 105
CviAII CATG 2 cut(s) 110, 134
CviJI RGCY 6 cut(s) 5, 54, 65, 92, 224, 237
CviKI_1 RGCY 6 cut(s) 5, 54, 65, 92, 224, 237
DdeI CTNAG 2 cut(s) 48, 242
DpnI GATC 1 cut(s) 69
DpnII GATC 1 cut(s) 67
EaeI YGGCCR 1 cut(s) 3
Eco32I GATATC 1 cut(s) 146
Eco57I CTGAAG 1 cut(s) 56
Eco81I CCTNAGG 1 cut(s) 242
EcoRV GATATC 1 cut(s) 146
FaeI CATG 2 cut(s) 113, 137
FaiI YATR 9 cut(s) 27, 111, 126, 135, 171, 180, 182, 188, 192
FatI CATG 2 cut(s) 109, 133
FokI GGATG 2 cut(s) 29, 92
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 2 cut(s) 113, 137
HinfI GANTC 2 cut(s) 76, 199
Hpy188I TCNGA 2 cut(s) 75, 220
Hpy188III TCNNGA 2 cut(s) 203, 244
HpyCH4V TGCA 1 cut(s) 137
HpyF10VI GCNNNNNNNGC 2 cut(s) 110, 221
HpyF3I CTNAG 2 cut(s) 48, 242
Hsp92II CATG 2 cut(s) 113, 137
Kzo9I GATC 1 cut(s) 67
LpnPI CCDG 3 cut(s) 78, 188, 229
MaeIII GTNAC 1 cut(s) 164
MalI GATC 1 cut(s) 69
MboI GATC 1 cut(s) 67
MboII GAAGA 2 cut(s) 62, 153
MfeI CAATTG 1 cut(s) 33
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 33, 247
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 70
MnlI CCTC 4 cut(s) 7, 22, 43, 251
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 1 cut(s) 15
Msp20I TGGCCA 1 cut(s) 5
MunI CAATTG 1 cut(s) 33
MwoI GCNNNNNNNGC 2 cut(s) 110, 221
NdeII GATC 1 cut(s) 67
NlaIII CATG 2 cut(s) 113, 137
PfeI GAWTC 1 cut(s) 199
PleI GAGTC 1 cut(s) 70
PpsI GAGTC 1 cut(s) 70
PsiI TTATAA 1 cut(s) 126
RseI CAYNNNNRTG 1 cut(s) 15
Sau3AI GATC 1 cut(s) 67
SchI GAGTC 1 cut(s) 70
SetI ASST 5 cut(s) 94, 187, 226, 239, 243
SmiMI CAYNNNNRTG 1 cut(s) 15
Sse9I AATT 2 cut(s) 33, 247
TasI AATT 2 cut(s) 33, 247
TfiI GAWTC 1 cut(s) 199
TspDTI ATGAA 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.