Rh6AG143400

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0017262
Physical Location & Seq
Reverse (-)
22280723 .. 22281881
1159 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG143400.1

Sequence Viewer

Length: 354 bp
ATGGCAACAAATAGACCTGATGTTTTAGATCCTGCACTTCTCCGACCTGGGAGACTAGACCGGAAAATAGAGATTCCATTGCCTAATGAACAGTCAAGAATGGAAATTCTTAAAATTCATGCTGCTGGAATAGCTAAACATGGGGAAATTGATTATGAGGCAGTTGTGAAGCTTGCTGAGGGCTTTAACGGAGCAGATCTGCGGAATGTCTGCACTGAAGCTGGGATGTCTGCGATCCGTGCTGAACGCGATTATGTCATTCATGAAGACTTCATGAAGGCTGTAAGAAAATTGAACGAAGCCAAGAAGCTGGAATCAAGCGCACACTATAATGCTGATTTTGGAAAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030162 GO:0030163 GO:0030312 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033554 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0055044 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

117

Amino Acids

13.1

Weight (kDa)

6.1

Isoelectric Point (pI)

41.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_lid_3 PF17862 50 - 92 1.9e-13 AAA+ lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 249
AciI CCGC 1 cut(s) 202
AclWI GGATC 2 cut(s) 23, 229
AcsI RAATTY 2 cut(s) 105, 114
AcuI CTGAAG 1 cut(s) 237
AgsI TTSAA 1 cut(s) 295
AjnI CCWGG 1 cut(s) 46
AluBI AGCT 4 cut(s) 134, 172, 221, 310
AluI AGCT 4 cut(s) 134, 172, 221, 310
Alw26I GTCTC 1 cut(s) 46
AlwI GGATC 2 cut(s) 23, 229
ApeKI GCWGC 1 cut(s) 122
ApoI RAATTY 2 cut(s) 105, 114
AspLEI GCGC 1 cut(s) 323
BbsI GAAGAC 1 cut(s) 273
BbvCI CCTCAGC 1 cut(s) 177
BbvI GCAGC 1 cut(s) 109
BciT130I CCWGG 1 cut(s) 48
BcoDI GTCTC 1 cut(s) 46
BfaI CTAG 1 cut(s) 56
BglII AGATCT 1 cut(s) 196
BisI GCNGC 1 cut(s) 123
BlsI GCNGC 1 cut(s) 124
Bme1390I CCNGG 1 cut(s) 48
BmrFI CCNGG 1 cut(s) 48
BpiI GAAGAC 1 cut(s) 273
Bpu10I CCTNAGC 1 cut(s) 177
BsaJI CCNNGG 1 cut(s) 47
BsaWI WCCGGW 1 cut(s) 60
Bse3DI GCAATG 1 cut(s) 77
BseBI CCWGG 1 cut(s) 48
BseDI CCNNGG 1 cut(s) 47
BseGI GGATG 1 cut(s) 231
BseMI GCAATG 1 cut(s) 77
BseMII CTCAG 1 cut(s) 168
BseXI GCAGC 1 cut(s) 109
BseYI CCCAGC 1 cut(s) 221
BsgI GTGCAG 2 cut(s) 18, 196
Bsh1236I CGCG 1 cut(s) 249
BsiSI CCGG 1 cut(s) 61
BsmAI GTCTC 1 cut(s) 46
Bsp143I GATC 3 cut(s) 28, 196, 234
BspACI CCGC 1 cut(s) 202
BspCNI CTCAG 1 cut(s) 169
BspFNI CGCG 1 cut(s) 249
BspHI TCATGA 2 cut(s) 262, 273
BspPI GGATC 2 cut(s) 23, 229
BsrDI GCAATG 1 cut(s) 77
BssECI CCNNGG 1 cut(s) 47
BssMI GATC 3 cut(s) 28, 196, 234
Bst2UI CCWGG 1 cut(s) 48
Bst4CI ACNGT 1 cut(s) 93
BstC8I GCNNGC 1 cut(s) 174
BstDEI CTNAG 1 cut(s) 177
BstF5I GGATG 1 cut(s) 231
BstFNI CGCG 1 cut(s) 249
BstHHI GCGC 1 cut(s) 323
BstKTI GATC 3 cut(s) 31, 199, 237
BstMAI GTCTC 1 cut(s) 46
BstMBI GATC 3 cut(s) 28, 196, 234
BstMWI GCNNNNNNNGC 2 cut(s) 131, 239
BstNI CCWGG 1 cut(s) 48
BstSCI CCNGG 1 cut(s) 46
BstUI CGCG 1 cut(s) 249
BstV1I GCAGC 1 cut(s) 109
BstV2I GAAGAC 1 cut(s) 273
BstX2I RGATCY 2 cut(s) 28, 196
BstXI CCANNNNNNTGG 1 cut(s) 310
BstYI RGATCY 2 cut(s) 28, 196
BtsCI GGATG 1 cut(s) 231
BtsIMutI CAGTG 1 cut(s) 213
Cac8I GCNNGC 1 cut(s) 174
CciI TCATGA 2 cut(s) 262, 273
CfoI GCGC 1 cut(s) 323
CviAII CATG 4 cut(s) 119, 140, 263, 274
CviJI RGCY 7 cut(s) 134, 172, 183, 221, 281, 302, 310
CviKI_1 RGCY 7 cut(s) 134, 172, 183, 221, 281, 302, 310
DdeI CTNAG 1 cut(s) 177
DpnI GATC 3 cut(s) 30, 198, 236
DpnII GATC 3 cut(s) 28, 196, 234
Eco57I CTGAAG 1 cut(s) 237
EcoRII CCWGG 1 cut(s) 46
FaeI CATG 4 cut(s) 122, 143, 266, 277
FaiI YATR 7 cut(s) 120, 141, 156, 255, 264, 275, 330
FatI CATG 4 cut(s) 118, 139, 262, 273
Fnu4HI GCNGC 1 cut(s) 123
FokI GGATG 1 cut(s) 238
Fsp4HI GCNGC 1 cut(s) 123
FspBI CTAG 1 cut(s) 56
GlaI GCGC 1 cut(s) 322
GluI GCNGC 1 cut(s) 123
GsaI CCCAGC 1 cut(s) 225
HapII CCGG 1 cut(s) 61
HhaI GCGC 1 cut(s) 323
Hin1II CATG 4 cut(s) 122, 143, 266, 277
Hin6I GCGC 1 cut(s) 321
HinP1I GCGC 1 cut(s) 321
HindIII AAGCTT 1 cut(s) 170
HinfI GANTC 2 cut(s) 73, 314
HpaII CCGG 1 cut(s) 61
Hpy188I TCNGA 1 cut(s) 44
Hpy188III TCNNGA 3 cut(s) 96, 263, 274
HpyAV CCTTC 1 cut(s) 271
HpyCH4III ACNGT 1 cut(s) 93
HpyCH4V TGCA 2 cut(s) 35, 213
HpyF10VI GCNNNNNNNGC 2 cut(s) 131, 239
HpyF3I CTNAG 1 cut(s) 177
Hsp92II CATG 4 cut(s) 122, 143, 266, 277
HspAI GCGC 1 cut(s) 321
Kzo9I GATC 3 cut(s) 28, 196, 234
LmnI GCTCC 1 cut(s) 191
LpnPI CCDG 8 cut(s) 30, 33, 45, 60, 74, 111, 207, 296
Lsp1109I GCAGC 1 cut(s) 109
MaeI CTAG 1 cut(s) 56
MalI GATC 3 cut(s) 30, 198, 236
MboI GATC 3 cut(s) 28, 196, 234
MboII GAAGA 1 cut(s) 278
MflI RGATCY 2 cut(s) 28, 196
MluCI AATT 4 cut(s) 105, 114, 147, 290
MmeI TCCRAC 1 cut(s) 67
MnlI CCTC 2 cut(s) 151, 172
MseI TTAA 2 cut(s) 111, 186
MslI CAYNNNNRTG 1 cut(s) 330
MspI CCGG 1 cut(s) 61
MspR9I CCNGG 1 cut(s) 48
MvaI CCWGG 1 cut(s) 48
MvnI CGCG 1 cut(s) 249
MwoI GCNNNNNNNGC 2 cut(s) 131, 239
NdeII GATC 3 cut(s) 28, 196, 234
NlaIII CATG 4 cut(s) 122, 143, 266, 277
PagI TCATGA 2 cut(s) 262, 273
PfeI GAWTC 2 cut(s) 73, 314
PkrI GCNGC 1 cut(s) 124
Psp6I CCWGG 1 cut(s) 46
PspFI CCCAGC 1 cut(s) 221
PspGI CCWGG 1 cut(s) 46
PsuI RGATCY 2 cut(s) 28, 196
RseI CAYNNNNRTG 1 cut(s) 330
SaqAI TTAA 2 cut(s) 111, 186
SatI GCNGC 1 cut(s) 123
Sau3AI GATC 3 cut(s) 28, 196, 234
ScrFI CCNGG 1 cut(s) 48
SetI ASST 6 cut(s) 19, 49, 136, 174, 223, 312
SmiMI CAYNNNNRTG 1 cut(s) 330
Sse9I AATT 4 cut(s) 105, 114, 147, 290
SsiI CCGC 1 cut(s) 202
SspMI CTAG 1 cut(s) 56
StyD4I CCNGG 1 cut(s) 46
TaaI ACNGT 1 cut(s) 93
TasI AATT 4 cut(s) 105, 114, 147, 290
TfiI GAWTC 2 cut(s) 73, 314
Tru1I TTAA 2 cut(s) 111, 186
Tru9I TTAA 2 cut(s) 111, 186
TscAI CASTG 1 cut(s) 220
TseI GCWGC 1 cut(s) 122
TspDTI ATGAA 6 cut(s) 102, 107, 251, 262, 279, 290
TspGWI ACGGA 2 cut(s) 204, 227
TspRI CASTG 1 cut(s) 220
XapI RAATTY 2 cut(s) 105, 114
XspI CTAG 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.