Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0017262

Physical Location & Seq

Genomic Coordinates Reverse (-)

29804314 .. 29806176

Gene Structure 1863 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00308300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGCCACTTCCTACCAAACTGATGCTTAAGAACAATTGTATTTGTCTCGCTCCCGATGCTAACCTCATTAGAGATGTCGGTGTGAAGTATAAGACTGAAACAAACTCTGTGATTCAGAATGTGGAGCATCCAAAGCTTGCTGCATTCATCAAGGAACATACTTGGGTGATGGAATCCGGAGAATATCTTACTTTTCCTCAAAACCGATCCGAGGTAAAGGGTGGGGTTCTTCATTATCTTGAGTCCATTGAAGAGGATACCATTGGTTTGCAATCTTTTGCTGCTGGTGGAAAGTTATTGCAGTTAATATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0012505 GO:0016740 GO:0016741 GO:0031410 GO:0031982 GO:0031984 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

104

Amino Acids

11.65

Weight (kDa)

5.87

Isoelectric Point (pI)

46.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_29	PF03141	28 - 85	1e-08	Putative S-adenosyl-L-methionine-dependent methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0017262)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g10181
rosa_chinensis	RchiOBHm_Chr5g0016371
rosa_multiflora	Rmu_co8412837.1_g000001
rosa_roxburghii	Rroxscaffold_4G00308300
rosa_samantha	Rh2DG622400 Rh5AG125500 Rh5BG124500 Rh5CG136700 Rh5DG124200 Rh6AG143400 Rh6BG143900 Rh6CG140500 Rh6DG128100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	176
AclWI	GGATC	1 cut(s)	201
AfiI	CCNNNNNNNGG	1 cut(s)	211
AflII	CTTAAG	1 cut(s)	26
AgsI	TTSAA	1 cut(s)	251
AluBI	AGCT	1 cut(s)	136
AluI	AGCT	1 cut(s)	136
Alw26I	GTCTC	1 cut(s)	50
AlwI	GGATC	1 cut(s)	201
Aor13HI	TCCGGA	1 cut(s)	176
ApeKI	GCWGC	2 cut(s)	140, 281
AsuHPI	GGTGA	1 cut(s)	178
BbvI	GCAGC	2 cut(s)	127, 268
BccI	CCATC	1 cut(s)	163
BciVI	GTATCC	1 cut(s)	250
BcoDI	GTCTC	1 cut(s)	50
BfrI	CTTAAG	1 cut(s)	26
BfuI	GTATCC	1 cut(s)	250
BisI	GCNGC	2 cut(s)	141, 282
BlsI	GCNGC	2 cut(s)	142, 283
BmsI	GCATC	3 cut(s)	12, 46, 136
BpuEI	CTTGAG	1 cut(s)	260
BsaJI	CCNNGG	1 cut(s)	210
BsaWI	WCCGGW	1 cut(s)	176
Bsc4I	CCNNNNNNNGG	1 cut(s)	211
BseAI	TCCGGA	1 cut(s)	176
BseDI	CCNNGG	1 cut(s)	210
BseGI	GGATG	1 cut(s)	127
BseLI	CCNNNNNNNGG	1 cut(s)	211
BseXI	GCAGC	2 cut(s)	127, 268
BsiSI	CCGG	1 cut(s)	177
BslI	CCNNNNNNNGG	1 cut(s)	211
BsmAI	GTCTC	1 cut(s)	50
BsmI	GAATGC	1 cut(s)	143
Bsp13I	TCCGGA	1 cut(s)	176
Bsp143I	GATC	1 cut(s)	206
BspEI	TCCGGA	1 cut(s)	176
BspPI	GGATC	1 cut(s)	201
BspTI	CTTAAG	1 cut(s)	26
BssECI	CCNNGG	1 cut(s)	210
BssMI	GATC	1 cut(s)	206
Bst6I	CTCTTC	1 cut(s)	246
BstAFI	CTTAAG	1 cut(s)	26
BstC8I	GCNNGC	1 cut(s)	138
BstF5I	GGATG	1 cut(s)	127
BstKTI	GATC	1 cut(s)	209
BstMAI	GTCTC	1 cut(s)	50
BstMBI	GATC	1 cut(s)	206
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 133
BstV1I	GCAGC	2 cut(s)	127, 268
BsuI	GTATCC	1 cut(s)	250
BtsCI	GGATG	1 cut(s)	127
Cac8I	GCNNGC	1 cut(s)	138
CviJI	RGCY	1 cut(s)	136
CviKI_1	RGCY	1 cut(s)	136
DpnI	GATC	1 cut(s)	208
DpnII	GATC	1 cut(s)	206
Eam1104I	CTCTTC	1 cut(s)	246
EarI	CTCTTC	1 cut(s)	246
FaiI	YATR	2 cut(s)	90, 159
Fnu4HI	GCNGC	2 cut(s)	141, 282
FokI	GGATG	1 cut(s)	114
Fsp4HI	GCNGC	2 cut(s)	141, 282
GluI	GCNGC	2 cut(s)	141, 282
HapII	CCGG	1 cut(s)	177
HindIII	AAGCTT	1 cut(s)	134
HinfI	GANTC	3 cut(s)	112, 173, 242
HpaII	CCGG	1 cut(s)	177
HphI	GGTGA	1 cut(s)	178
Hpy188I	TCNGA	2 cut(s)	117, 211
Hpy188III	TCNNGA	3 cut(s)	53, 177, 239
HpyCH4V	TGCA	3 cut(s)	143, 271, 301
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 133
Kpn2I	TCCGGA	1 cut(s)	176
Kzo9I	GATC	1 cut(s)	206
LmnI	GCTCC	2 cut(s)	55, 124
LpnPI	CCDG	2 cut(s)	190, 270
Lsp1109I	GCAGC	2 cut(s)	127, 268
LweI	GCATC	3 cut(s)	12, 46, 136
MalI	GATC	1 cut(s)	208
MboI	GATC	1 cut(s)	206
MboII	GAAGA	2 cut(s)	221, 263
MfeI	CAATTG	1 cut(s)	34
MluCI	AATT	1 cut(s)	34
MlyI	GAGTC	1 cut(s)	251
MnlI	CCTC	4 cut(s)	74, 205, 207, 247
MroI	TCCGGA	1 cut(s)	176
MseI	TTAA	2 cut(s)	27, 305
MspCI	CTTAAG	1 cut(s)	26
MspI	CCGG	1 cut(s)	177
MunI	CAATTG	1 cut(s)	34
Mva1269I	GAATGC	1 cut(s)	143
MwoI	GCNNNNNNNGC	2 cut(s)	56, 133
NdeII	GATC	1 cut(s)	206
PctI	GAATGC	1 cut(s)	143
PfeI	GAWTC	2 cut(s)	112, 173
PkrI	GCNGC	2 cut(s)	142, 283
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
SaqAI	TTAA	2 cut(s)	27, 305
SatI	GCNGC	2 cut(s)	141, 282
Sau3AI	GATC	1 cut(s)	206
SchI	GAGTC	1 cut(s)	251
SetI	ASST	3 cut(s)	66, 138, 216
SfaNI	GCATC	3 cut(s)	12, 46, 136
SgeI	CNNG	9 cut(s)	59, 65, 149, 163, 174, 189, 223, 251, 297
SmlI	CTYRAG	2 cut(s)	26, 239
SmoI	CTYRAG	2 cut(s)	26, 239
Sse9I	AATT	1 cut(s)	34
SspI	AATATT	1 cut(s)	309
TasI	AATT	1 cut(s)	34
TfiI	GAWTC	2 cut(s)	112, 173
Tru1I	TTAA	2 cut(s)	27, 305
Tru9I	TTAA	2 cut(s)	27, 305
TseI	GCWGC	2 cut(s)	140, 281
TspDTI	ATGAA	2 cut(s)	136, 221
Vha464I	CTTAAG	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.