FvH4_3g11410

Belongs to the Casparian strip membrane proteins (CASP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0012085
Physical Location & Seq
Reverse (-)
6724181 .. 6725322
1142 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g11410.t1

Sequence Viewer

Length: 570 bp
ATGGCGCTAGAAGATGGAGAGAAACCAGGGTCTACTTTGGTGGTGGTGAGAAAGCCAAACGATTGTATCATTCTCTTGCTGAGAGTTGTTGCATTCTTGGCCACACTTTCCGCAACTCTTGTGATGGCACTCAACAAAGAAACCAAAACCTTGGTTGTTGCTACTGTTGGGACTACTCAAGTTAAAGCAACTCTCACAGCCAAGTTTCAACACAATCCAGCAAATGTGTACTTTGTTGTAGCTAATGCAATGGCCAGCTTTCATAACTTGTTGATGATAATAGTGCACCTCTGCGGAGGCAAGTTCAAGGACAAGGGTCTTCGCCTTGTGATGATGGCCATTTTAGACATGATGACTGTGGCCCTGGCATCATCTGGTGATGGTGCAGCTACCTTCATGGCACAGCTAGGGAAGAACGGAAACTCACACGCAAGGTGGAACAAAATCTGTGACAAGTTTGGCAAGTTCTGTGACCATGGTGGTGGTGCTCTCATTGCTTCTTATATCGGGCTGCTTCTTTTGGTGGTTATCACGGTGTTGTCCATCATCAAGCTACTCAAAACCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0048037 GO:0051536 GO:0051540 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF588

Protein Analysis

190

Amino Acids

20.2

Weight (kDa)

9.67

Isoelectric Point (pI)

21.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CASP_dom PF04535 21 - 172 4.2e-37 Casparian strip membrane protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012085)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G20390 AT5G44550
fragaria_vesca FvH4_3g11410
malus_domestica MD05G1263600.v1.1 MD10G1241300.v1.1
prunus_persica Prupe.4G101900_v2.0.a1
pyrus_communis pycom05g24760 pycom10g20230
rosa_chinensis RchiOBHm_Chr5g0018351
rosa_laevigata RLG00000032354
rosa_multiflora Rmu_sc0019610.1_g000001 Rmu_sc0029003.1_g000002
rosa_roxburghii Rroxscaffold_1G00059390
rosa_rugosa Rorug05G0041700.1
rosa_samantha Rh5AG135000 Rh5BG133600 Rh5CG145400 Rh5DG135000
rosa_wichuraiana Rw5G011790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 32
AciI CCGC 2 cut(s) 111, 294
AcoI YGGCCR 3 cut(s) 99, 252, 336
AfaI GTAC 1 cut(s) 230
AgsI TTSAA 2 cut(s) 209, 307
AjnI CCWGG 2 cut(s) 25, 363
AluBI AGCT 5 cut(s) 242, 258, 389, 406, 553
AluI AGCT 5 cut(s) 242, 258, 389, 406, 553
Alw21I GWGCWC 2 cut(s) 288, 490
Alw44I GTGCAC 1 cut(s) 284
AoxI GGCC 4 cut(s) 99, 252, 336, 360
ApaLI GTGCAC 1 cut(s) 284
ApeKI GCWGC 2 cut(s) 386, 511
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 361
AsuHPI GGTGA 2 cut(s) 58, 389
BaeGI GKGCMC 1 cut(s) 288
BaeI ACNNNNGTAYC 2 cut(s) 49, 82
BalI TGGCCA 3 cut(s) 101, 254, 338
BbsI GAAGAC 1 cut(s) 311
Bbv12I GWGCWC 2 cut(s) 288, 490
BbvI GCAGC 2 cut(s) 398, 498
BccI CCATC 5 cut(s) 8, 118, 328, 374, 551
BciT130I CCWGG 2 cut(s) 27, 365
BfaI CTAG 2 cut(s) 8, 407
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 2 cut(s) 387, 512
BlsI GCNGC 2 cut(s) 388, 513
Bme1390I CCNGG 2 cut(s) 27, 365
BmgT120I GGNCC 1 cut(s) 361
BmrFI CCNGG 2 cut(s) 27, 365
BmsI GCATC 1 cut(s) 377
BoxI GACNNNNGTC 1 cut(s) 315
BpiI GAAGAC 1 cut(s) 311
BpuEI CTTGAG 1 cut(s) 162
BsaJI CCNNGG 4 cut(s) 26, 150, 363, 475
Bse3DI GCAATG 2 cut(s) 255, 492
BseBI CCWGG 2 cut(s) 27, 365
BseDI CCNNGG 4 cut(s) 26, 150, 363, 475
BseMI GCAATG 2 cut(s) 255, 492
BseMII CTCAG 1 cut(s) 71
BseSI GKGCMC 1 cut(s) 288
BseXI GCAGC 2 cut(s) 398, 498
BsgI GTGCAG 1 cut(s) 405
BshFI GGCC 4 cut(s) 101, 254, 338, 362
BsiHKAI GWGCWC 2 cut(s) 288, 490
BslFI GGGAC 1 cut(s) 184
BsmFI GGGAC 1 cut(s) 184
BsmI GAATGC 1 cut(s) 92
BsnI GGCC 4 cut(s) 101, 254, 338, 362
Bsp1286I GDGCHC 2 cut(s) 288, 490
Bsp19I CCATGG 1 cut(s) 475
BspACI CCGC 2 cut(s) 111, 294
BspANI GGCC 4 cut(s) 101, 254, 338, 362
BspCNI CTCAG 1 cut(s) 72
BsrDI GCAATG 2 cut(s) 255, 492
BssECI CCNNGG 4 cut(s) 26, 150, 363, 475
BssT1I CCWWGG 2 cut(s) 150, 475
Bst2UI CCWGG 2 cut(s) 27, 365
Bst4CI ACNGT 3 cut(s) 166, 358, 535
BstC8I GCNNGC 1 cut(s) 256
BstDEI CTNAG 1 cut(s) 80
BstDSI CCRYGG 1 cut(s) 475
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstMWI GCNNNNNNNGC 2 cut(s) 98, 494
BstNI CCWGG 2 cut(s) 27, 365
BstPAI GACNNNNGTC 1 cut(s) 315
BstSCI CCNGG 2 cut(s) 25, 363
BstSLI GKGCMC 1 cut(s) 288
BstV1I GCAGC 2 cut(s) 398, 498
BstV2I GAAGAC 1 cut(s) 311
BstXI CCANNNNNNTGG 2 cut(s) 151, 482
BsuRI GGCC 4 cut(s) 101, 254, 338, 362
BtgI CCRYGG 1 cut(s) 475
Cac8I GCNNGC 1 cut(s) 256
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 361
Csp6I GTAC 1 cut(s) 229
CviAII CATG 3 cut(s) 349, 397, 476
CviQI GTAC 1 cut(s) 229
DdeI CTNAG 1 cut(s) 80
EaeI YGGCCR 3 cut(s) 99, 252, 336
Eco130I CCWWGG 2 cut(s) 150, 475
EcoRII CCWGG 2 cut(s) 25, 363
EcoT14I CCWWGG 2 cut(s) 150, 475
ErhI CCWWGG 2 cut(s) 150, 475
FaeI CATG 3 cut(s) 352, 400, 479
FaiI YATR 5 cut(s) 264, 350, 398, 477, 504
FaqI GGGAC 1 cut(s) 184
FatI CATG 3 cut(s) 348, 396, 475
FblI GTMKAC 1 cut(s) 32
Fnu4HI GCNGC 2 cut(s) 387, 512
Fsp4HI GCNGC 2 cut(s) 387, 512
FspBI CTAG 2 cut(s) 8, 407
GlaI GCGC 1 cut(s) 6
GluI GCNGC 2 cut(s) 387, 512
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 4 cut(s) 101, 254, 338, 362
HhaI GCGC 1 cut(s) 7
Hin1II CATG 3 cut(s) 352, 400, 479
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HphI GGTGA 2 cut(s) 58, 389
Hpy166II GTNNAC 3 cut(s) 33, 229, 286
Hpy8I GTNNAC 3 cut(s) 33, 229, 286
HpyAV CCTTC 1 cut(s) 403
HpyCH4III ACNGT 3 cut(s) 166, 358, 535
HpyCH4V TGCA 4 cut(s) 92, 248, 286, 386
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 494
HpyF3I CTNAG 1 cut(s) 80
Hsp92II CATG 3 cut(s) 352, 400, 479
HspAI GCGC 1 cut(s) 5
LpnPI CCDG 7 cut(s) 12, 39, 231, 268, 350, 360, 377
Lsp1109I GCAGC 2 cut(s) 398, 498
LweI GCATC 1 cut(s) 377
MaeI CTAG 2 cut(s) 8, 407
MaeIII GTNAC 2 cut(s) 449, 470
MboII GAAGA 3 cut(s) 23, 311, 424
MhlI GDGCHC 2 cut(s) 288, 490
MlsI TGGCCA 3 cut(s) 101, 254, 338
MluNI TGGCCA 3 cut(s) 101, 254, 338
MnlI CCTC 2 cut(s) 290, 299
Mox20I TGGCCA 3 cut(s) 101, 254, 338
MscI TGGCCA 3 cut(s) 101, 254, 338
MseI TTAA 1 cut(s) 183
MslI CAYNNNNRTG 1 cut(s) 480
Msp20I TGGCCA 3 cut(s) 101, 254, 338
MspR9I CCNGG 2 cut(s) 27, 365
Mva1269I GAATGC 1 cut(s) 92
MvaI CCWGG 2 cut(s) 27, 365
MwoI GCNNNNNNNGC 2 cut(s) 98, 494
NcoI CCATGG 1 cut(s) 475
NlaIII CATG 3 cut(s) 352, 400, 479
NmuCI GTSAC 2 cut(s) 449, 470
PctI GAATGC 1 cut(s) 92
PkrI GCNGC 2 cut(s) 388, 513
PshAI GACNNNNGTC 1 cut(s) 315
Psp6I CCWGG 2 cut(s) 25, 363
PspGI CCWGG 2 cut(s) 25, 363
PspPI GGNCC 1 cut(s) 361
RsaI GTAC 1 cut(s) 230
RsaNI GTAC 1 cut(s) 229
RseI CAYNNNNRTG 1 cut(s) 480
SaqAI TTAA 1 cut(s) 183
SatI GCNGC 2 cut(s) 387, 512
Sau96I GGNCC 1 cut(s) 361
ScrFI CCNGG 2 cut(s) 27, 365
SduI GDGCHC 2 cut(s) 288, 490
SetI ASST 9 cut(s) 152, 244, 260, 291, 391, 395, 408, 437, 555
SfaNI GCATC 1 cut(s) 377
SmiMI CAYNNNNRTG 1 cut(s) 480
SmlI CTYRAG 1 cut(s) 177
SmoI CTYRAG 1 cut(s) 177
SsiI CCGC 2 cut(s) 111, 294
SspMI CTAG 2 cut(s) 8, 407
StyD4I CCNGG 2 cut(s) 25, 363
StyI CCWWGG 2 cut(s) 150, 475
TaaI ACNGT 3 cut(s) 166, 358, 535
TatI WGTACW 1 cut(s) 228
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TseFI GTSAC 2 cut(s) 449, 470
TseI GCWGC 2 cut(s) 386, 511
Tsp45I GTSAC 2 cut(s) 449, 470
TspDTI ATGAA 2 cut(s) 251, 385
TspGWI ACGGA 1 cut(s) 432
VneI GTGCAC 1 cut(s) 284
XmiI GTMKAC 1 cut(s) 32
XspI CTAG 2 cut(s) 8, 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.