Prupe.4G101900_v2.0.a1

Belongs to the Casparian strip membrane proteins (CASP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0012085
Physical Location & Seq
Reverse (-)
5208871 .. 5209951
1081 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G101900.1

Sequence Viewer

Length: 576 bp
ATGGCTATAGAAAATGGGGAGAAACCACAGGATGCGTCAGCTTTTGTGGCGGTGACAAAGCCGACGGATTGGACCATTGTCATACTGAGGGTGGTGGCATTTTTGGCCACAGCCTCTGCAACTGTTGTAATGGCGCTCAACAAAGAGACCAAGTCCTTGGTGGTTGCCACCATTGGGACAACCCCAGTTAGAGCCACCCTCACAGCCAAGTTTCAACACAATCCAGCAAATGTGTTCTTTGTGATAGCTAATGGGATGGCCAGCCTTCATAACCTCTCCATGATCACAGTGCACTTCTTTGGAGACAAGTTCAAGGACAAAGCCCTTCGCCTGGTGATGGTGGCCATTTTAGACGTGATGACTGTGTCCCTGGCATCTTCAGGTGATGGTGCAGCAACCTTCATGGCACAGCTAGGGAAGAACGGTAATTCGCATGCGAGGTGGAACAAAATATGTGACAAGTTCCACAAGTTCTGCGACCACGGCGGCGGTGCCCTCATTGCTTCCTACGTGGGGCTCCTCCTCCTGCTGGTTATTACAGTGTTGTCCATTGTCAAACTACTTAAAACAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0048037 GO:0051536 GO:0051540 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF588

Protein Analysis

192

Amino Acids

20.44

Weight (kDa)

9.7

Isoelectric Point (pI)

24.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012085)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G20390 AT5G44550
fragaria_vesca FvH4_3g11410
malus_domestica MD05G1263600.v1.1 MD10G1241300.v1.1
prunus_persica Prupe.4G101900_v2.0.a1
pyrus_communis pycom05g24760 pycom10g20230
rosa_chinensis RchiOBHm_Chr5g0018351
rosa_laevigata RLG00000032354
rosa_multiflora Rmu_sc0019610.1_g000001 Rmu_sc0029003.1_g000002
rosa_roxburghii Rroxscaffold_1G00059390
rosa_rugosa Rorug05G0041700.1
rosa_samantha Rh5AG135000 Rh5BG133600 Rh5CG145400 Rh5DG135000
rosa_wichuraiana Rw5G011790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 491
AciI CCGC 3 cut(s) 50, 486, 489
AcoI YGGCCR 3 cut(s) 105, 258, 342
AcuI CTGAAG 1 cut(s) 363
AfiI CCNNNNNNNGG 5 cut(s) 174, 331, 337, 513, 529
AgsI TTSAA 2 cut(s) 215, 313
AjiI CACGTC 1 cut(s) 355
AjnI CCWGG 2 cut(s) 330, 369
AluBI AGCT 3 cut(s) 41, 248, 412
AluI AGCT 3 cut(s) 41, 248, 412
Alw21I GWGCWC 1 cut(s) 294
Alw26I GTCTC 2 cut(s) 140, 297
Alw44I GTGCAC 1 cut(s) 290
AlwNI CAGNNNCTG 1 cut(s) 116
AoxI GGCC 3 cut(s) 105, 258, 342
ApaLI GTGCAC 1 cut(s) 290
ApeKI GCWGC 1 cut(s) 392
AspLEI GCGC 1 cut(s) 136
AspS9I GGNCC 1 cut(s) 72
AsuHPI GGTGA 3 cut(s) 64, 346, 395
AvaII GGWCC 1 cut(s) 72
BaeGI GKGCMC 2 cut(s) 294, 496
BalI TGGCCA 3 cut(s) 107, 260, 344
BanI GGYRCC 1 cut(s) 491
BanII GRGCYC 1 cut(s) 519
Bbv12I GWGCWC 1 cut(s) 294
BbvI GCAGC 1 cut(s) 404
BccI CCATC 3 cut(s) 250, 331, 380
BceAI ACGGC 1 cut(s) 499
BciT130I CCWGG 2 cut(s) 332, 371
BclI TGATCA 1 cut(s) 282
BcoDI GTCTC 2 cut(s) 140, 297
BfaI CTAG 1 cut(s) 413
BfmI CTRYAG 1 cut(s) 6
BfoI RGCGCY 1 cut(s) 137
BisI GCNGC 2 cut(s) 393, 487
BlsI GCNGC 2 cut(s) 394, 488
Bme1390I CCNGG 2 cut(s) 332, 371
Bme18I GGWCC 1 cut(s) 72
BmgBI CACGTC 1 cut(s) 355
BmgT120I GGNCC 1 cut(s) 72
BmiI GGNNCC 2 cut(s) 493, 518
BmrFI CCNGG 2 cut(s) 332, 371
BmrI ACTGGG 1 cut(s) 179
BmsI GCATC 2 cut(s) 22, 383
BmuI ACTGGG 1 cut(s) 179
BoxI GACNNNNGTC 1 cut(s) 77
BplI GAGNNNNNCTC 2 cut(s) 183, 215
BsaAI YACGTR 1 cut(s) 511
BsaI GGTCTC 1 cut(s) 140
BsaJI CCNNGG 3 cut(s) 156, 369, 481
Bsc4I CCNNNNNNNGG 5 cut(s) 174, 331, 337, 513, 529
Bse1I ACTGG 1 cut(s) 185
Bse3DI GCAATG 1 cut(s) 498
BseBI CCWGG 2 cut(s) 332, 371
BseDI CCNNGG 3 cut(s) 156, 369, 481
BseGI GGATG 2 cut(s) 37, 261
BseLI CCNNNNNNNGG 5 cut(s) 174, 331, 337, 513, 529
BseMI GCAATG 1 cut(s) 498
BseMII CTCAG 1 cut(s) 77
BseNI ACTGG 1 cut(s) 185
BseRI GAGGAG 2 cut(s) 509, 512
BseSI GKGCMC 2 cut(s) 294, 496
BseXI GCAGC 1 cut(s) 404
BsgI GTGCAG 1 cut(s) 411
BshFI GGCC 3 cut(s) 107, 260, 344
BshNI GGYRCC 1 cut(s) 491
BsiHKAI GWGCWC 1 cut(s) 294
BslFI GGGAC 2 cut(s) 190, 352
BslI CCNNNNNNNGG 5 cut(s) 174, 331, 337, 513, 529
BsmAI GTCTC 2 cut(s) 140, 297
BsmFI GGGAC 2 cut(s) 190, 352
BsnI GGCC 3 cut(s) 107, 260, 344
Bso31I GGTCTC 1 cut(s) 140
Bsp1286I GDGCHC 3 cut(s) 294, 496, 519
Bsp143I GATC 1 cut(s) 282
BspACI CCGC 3 cut(s) 50, 486, 489
BspANI GGCC 3 cut(s) 107, 260, 344
BspCNI CTCAG 1 cut(s) 78
BspLI GGNNCC 2 cut(s) 493, 518
BspT107I GGYRCC 1 cut(s) 491
BspTNI GGTCTC 1 cut(s) 140
BsrDI GCAATG 1 cut(s) 498
BsrI ACTGG 1 cut(s) 185
BssECI CCNNGG 3 cut(s) 156, 369, 481
BssMI GATC 1 cut(s) 282
BssT1I CCWWGG 1 cut(s) 156
Bst2UI CCWGG 2 cut(s) 332, 371
Bst4CI ACNGT 5 cut(s) 124, 289, 364, 425, 541
BstBAI YACGTR 1 cut(s) 511
BstC8I GCNNGC 2 cut(s) 262, 435
BstDEI CTNAG 1 cut(s) 86
BstDSI CCRYGG 1 cut(s) 481
BstF5I GGATG 2 cut(s) 37, 261
BstH2I RGCGCY 1 cut(s) 137
BstHHI GCGC 1 cut(s) 136
BstKTI GATC 1 cut(s) 285
BstMAI GTCTC 2 cut(s) 140, 297
BstMBI GATC 1 cut(s) 282
BstMWI GCNNNNNNNGC 4 cut(s) 47, 104, 483, 500
BstNI CCWGG 2 cut(s) 332, 371
BstNSI RCATGY 1 cut(s) 437
BstPAI GACNNNNGTC 1 cut(s) 77
BstSCI CCNGG 2 cut(s) 330, 369
BstSFI CTRYAG 1 cut(s) 6
BstSLI GKGCMC 2 cut(s) 294, 496
BstV1I GCAGC 1 cut(s) 404
BstXI CCANNNNNNTGG 1 cut(s) 157
BsuRI GGCC 3 cut(s) 107, 260, 344
BtgI CCRYGG 1 cut(s) 481
BtrI CACGTC 1 cut(s) 355
BtsCI GGATG 2 cut(s) 37, 261
BtsIMutI CAGTG 2 cut(s) 294, 546
Cac8I GCNNGC 2 cut(s) 262, 435
CaiI CAGNNNCTG 1 cut(s) 116
CfoI GCGC 1 cut(s) 136
Cfr13I GGNCC 1 cut(s) 72
CseI GACGC 1 cut(s) 24
CviAII CATG 3 cut(s) 280, 403, 434
DdeI CTNAG 1 cut(s) 86
DpnI GATC 1 cut(s) 284
DpnII GATC 1 cut(s) 282
EaeI YGGCCR 3 cut(s) 105, 258, 342
Eco130I CCWWGG 1 cut(s) 156
Eco24I GRGCYC 1 cut(s) 519
Eco31I GGTCTC 1 cut(s) 140
Eco47I GGWCC 1 cut(s) 72
Eco57I CTGAAG 1 cut(s) 363
EcoRII CCWGG 2 cut(s) 330, 369
EcoT14I CCWWGG 1 cut(s) 156
EcoT38I GRGCYC 1 cut(s) 519
ErhI CCWWGG 1 cut(s) 156
FaeI CATG 3 cut(s) 283, 406, 437
FaiI YATR 7 cut(s) 8, 83, 270, 281, 404, 435, 454
FaqI GGGAC 2 cut(s) 190, 352
FatI CATG 3 cut(s) 279, 402, 433
FbaI TGATCA 1 cut(s) 282
Fnu4HI GCNGC 2 cut(s) 393, 487
FokI GGATG 2 cut(s) 44, 268
FriOI GRGCYC 1 cut(s) 519
Fsp4HI GCNGC 2 cut(s) 393, 487
FspBI CTAG 1 cut(s) 413
GlaI GCGC 1 cut(s) 135
GluI GCNGC 2 cut(s) 393, 487
HaeII RGCGCY 1 cut(s) 137
HaeIII GGCC 3 cut(s) 107, 260, 344
HgaI GACGC 1 cut(s) 24
HhaI GCGC 1 cut(s) 136
Hin1II CATG 3 cut(s) 283, 406, 437
Hin6I GCGC 1 cut(s) 134
HinP1I GCGC 1 cut(s) 134
HphI GGTGA 3 cut(s) 64, 346, 395
Hpy166II GTNNAC 1 cut(s) 292
Hpy8I GTNNAC 1 cut(s) 292
Hpy99I CGWCG 1 cut(s) 67
HpyAV CCTTC 3 cut(s) 275, 335, 409
HpyCH4III ACNGT 5 cut(s) 124, 289, 364, 425, 541
HpyCH4IV ACGT 2 cut(s) 354, 510
HpyCH4V TGCA 3 cut(s) 119, 292, 392
HpyF10VI GCNNNNNNNGC 4 cut(s) 47, 104, 483, 500
HpyF3I CTNAG 1 cut(s) 86
HpySE526I ACGT 2 cut(s) 354, 510
Hsp92II CATG 3 cut(s) 283, 406, 437
HspAI GCGC 1 cut(s) 134
Ksp22I TGATCA 1 cut(s) 282
Kzo9I GATC 1 cut(s) 282
LmnI GCTCC 1 cut(s) 522
Lsp1109I GCAGC 1 cut(s) 404
LweI GCATC 2 cut(s) 22, 383
MaeI CTAG 1 cut(s) 413
MaeII ACGT 2 cut(s) 354, 510
MaeIII GTNAC 2 cut(s) 52, 455
MalI GATC 1 cut(s) 284
MboI GATC 1 cut(s) 282
MboII GAAGA 2 cut(s) 369, 430
MhlI GDGCHC 3 cut(s) 294, 496, 519
MlsI TGGCCA 3 cut(s) 107, 260, 344
MluCI AATT 1 cut(s) 427
MluNI TGGCCA 3 cut(s) 107, 260, 344
MnlI CCTC 8 cut(s) 81, 124, 209, 284, 432, 506, 530, 533
Mox20I TGGCCA 3 cut(s) 107, 260, 344
MscI TGGCCA 3 cut(s) 107, 260, 344
MseI TTAA 1 cut(s) 564
Msp20I TGGCCA 3 cut(s) 107, 260, 344
MspR9I CCNGG 2 cut(s) 332, 371
MvaI CCWGG 2 cut(s) 332, 371
MwoI GCNNNNNNNGC 4 cut(s) 47, 104, 483, 500
NdeII GATC 1 cut(s) 282
NlaIII CATG 3 cut(s) 283, 406, 437
NlaIV GGNNCC 2 cut(s) 493, 518
NmuCI GTSAC 2 cut(s) 52, 455
NspI RCATGY 1 cut(s) 437
PaeI GCATGC 1 cut(s) 437
PflFI GACNNNGTC 2 cut(s) 151, 364
PkrI GCNGC 2 cut(s) 394, 488
Ppu21I YACGTR 1 cut(s) 511
PshAI GACNNNNGTC 1 cut(s) 77
Psp6I CCWGG 2 cut(s) 330, 369
PspGI CCWGG 2 cut(s) 330, 369
PspN4I GGNNCC 2 cut(s) 493, 518
PspPI GGNCC 1 cut(s) 72
PstNI CAGNNNCTG 1 cut(s) 116
PsyI GACNNNGTC 2 cut(s) 151, 364
SaqAI TTAA 1 cut(s) 564
SatI GCNGC 2 cut(s) 393, 487
Sau3AI GATC 1 cut(s) 282
Sau96I GGNCC 1 cut(s) 72
ScrFI CCNGG 2 cut(s) 332, 371
SduI GDGCHC 3 cut(s) 294, 496, 519
SetI ASST 9 cut(s) 43, 250, 276, 357, 385, 401, 414, 443, 513
SfaNI GCATC 2 cut(s) 22, 383
SfcI CTRYAG 1 cut(s) 6
SinI GGWCC 1 cut(s) 72
SphI GCATGC 1 cut(s) 437
Sse9I AATT 1 cut(s) 427
SsiI CCGC 3 cut(s) 50, 486, 489
SspMI CTAG 1 cut(s) 413
StyD4I CCNGG 2 cut(s) 330, 369
StyI CCWWGG 1 cut(s) 156
TaaI ACNGT 5 cut(s) 124, 289, 364, 425, 541
TaiI ACGT 2 cut(s) 357, 513
TasI AATT 1 cut(s) 427
TauI GCSGC 1 cut(s) 489
Tru1I TTAA 1 cut(s) 564
Tru9I TTAA 1 cut(s) 564
TscAI CASTG 2 cut(s) 294, 546
TseFI GTSAC 2 cut(s) 52, 455
TseI GCWGC 1 cut(s) 392
Tsp45I GTSAC 2 cut(s) 52, 455
TspDTI ATGAA 2 cut(s) 257, 391
TspGWI ACGGA 1 cut(s) 80
TspRI CASTG 2 cut(s) 294, 546
Tth111I GACNNNGTC 2 cut(s) 151, 364
VneI GTGCAC 1 cut(s) 290
VpaK11BI GGWCC 1 cut(s) 72
XceI RCATGY 1 cut(s) 437
XcmI CCANNNNNNNNNTGG 1 cut(s) 157
XspI CTAG 1 cut(s) 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.