Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0012085

Physical Location & Seq

Genomic Coordinates Forward (+)

26279277 .. 26280339

Gene Structure 1063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g24760.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGCGGTTGTGCAACGAAGAAAGAAAAAGATTAAAGCAAGGTAGCTCTACGTTTGTTGAGCCAATGTGTCTAGAAATTCTGGGTGACATAAGCAGGGGCAGATTAAACGATTCTAATCAAAGAAAACTAATTACATTCTTCACTTACTCAGCAACTGGTTCTGCCGCTATAAGAAGCAACAAAGCACTCACTTTTGTATATCACTCTCTCTCTCTCTCTAATTCAACCATGGCTCTAGAAAATGGACAGAAAGCCGAGGATAAGGCGGAGTTAGCGGCGGTGACGAAGCCGACGGACTGGACTATTGTCGTTCTGAGGGTGGTTGCGTTTTTTGCCACGGTGACTGCAACCGTTGTAATGGCAAGCAACAAAGAAACCAAGTCCTTGGTGGTTGCCCCACCAATAAGCGTCACTCTCACAGCCAAGTTTCAGCACAATCCTGCAAATGTGTACTTTGTGATAGCTAATGGAATTGCAAGCCTTCATAACGTGTTCATGATAGTTGTGCACTTTTTCGGAGACAAGTTCAAGGACAAGGGCCTTCAACTTGTGATGGTAGCCGTTTTAGACATGATGATTGTGGCCCTGGTATCTTCGGGCGATGGTGCAGCAACCTTCATGGCAGAGCTAGGGAAGAAGGGAAACTCGCACGCAAGGTGGAACAAAATCTGTGACAAGTTCGAGAAGTACTGCGACCGTGGCGGCGGTGCCATCATCTCTTCCTACATCGGACTCCTCTTTTTGCTGGTTATAACAGTGCTGTCCATCATCAAACTACTCAAAAGAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0048037 GO:0051536 GO:0051540 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

264

Amino Acids

28.83

Weight (kDa)

9.57

Isoelectric Point (pI)

28.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012085)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20390 AT5G44550
fragaria_vesca	FvH4_3g11410
malus_domestica	MD05G1263600.v1.1 MD10G1241300.v1.1
prunus_persica	Prupe.4G101900_v2.0.a1
pyrus_communis	pycom05g24760 pycom10g20230
rosa_chinensis	RchiOBHm_Chr5g0018351
rosa_laevigata	RLG00000032354
rosa_multiflora	Rmu_sc0019610.1_g000001 Rmu_sc0029003.1_g000002
rosa_roxburghii	Rroxscaffold_1G00059390
rosa_rugosa	Rorug05G0041700.1
rosa_samantha	Rh5AG135000 Rh5BG133600 Rh5CG145400 Rh5DG135000
rosa_wichuraiana	Rw5G011790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	752
AccB1I	GGYRCC	1 cut(s)	707
AciI	CCGC	7 cut(s)	4, 165, 266, 275, 278, 702, 705
AcsI	RAATTY	1 cut(s)	75
AfaI	GTAC	2 cut(s)	452, 689
AflIII	ACRYGT	1 cut(s)	489
AgsI	TTSAA	3 cut(s)	225, 529, 545
AjnI	CCWGG	1 cut(s)	585
AluBI	AGCT	3 cut(s)	45, 464, 628
AluI	AGCT	3 cut(s)	45, 464, 628
Alw21I	GWGCWC	1 cut(s)	510
Alw26I	GTCTC	1 cut(s)	513
Alw44I	GTGCAC	1 cut(s)	506
AlwNI	CAGNNNCTG	1 cut(s)	155
AoxI	GGCC	2 cut(s)	538, 582
ApaLI	GTGCAC	1 cut(s)	506
ApeKI	GCWGC	1 cut(s)	608
ApoI	RAATTY	1 cut(s)	75
AspS9I	GGNCC	2 cut(s)	538, 583
AsuHPI	GGTGA	3 cut(s)	95, 292, 352
BaeGI	GKGCMC	1 cut(s)	510
BanI	GGYRCC	1 cut(s)	707
Bbv12I	GWGCWC	1 cut(s)	510
BbvI	GCAGC	1 cut(s)	620
BccI	CCATC	4 cut(s)	547, 596, 719, 773
BceAI	ACGGC	1 cut(s)	545
BciT130I	CCWGG	1 cut(s)	587
BcoDI	GTCTC	1 cut(s)	513
BfaI	CTAG	3 cut(s)	71, 236, 629
BisI	GCNGC	4 cut(s)	165, 276, 609, 703
BlsI	GCNGC	4 cut(s)	166, 277, 610, 704
BmcAI	AGTACT	1 cut(s)	689
Bme1390I	CCNGG	1 cut(s)	587
BmgT120I	GGNCC	2 cut(s)	538, 583
BmiI	GGNNCC	1 cut(s)	709
BmrFI	CCNGG	1 cut(s)	587
BoxI	GACNNNNGTC	1 cut(s)	305
BsaBI	GATNNNNATC	1 cut(s)	114
BsaJI	CCNNGG	6 cut(s)	228, 255, 336, 384, 585, 697
Bse1I	ACTGG	2 cut(s)	160, 302
Bse8I	GATNNNNATC	1 cut(s)	114
BseBI	CCWGG	1 cut(s)	587
BseDI	CCNNGG	6 cut(s)	228, 255, 336, 384, 585, 697
BseJI	GATNNNNATC	1 cut(s)	114
BseMII	CTCAG	2 cut(s)	162, 305
BseNI	ACTGG	2 cut(s)	160, 302
BseRI	GAGGAG	1 cut(s)	725
BseSI	GKGCMC	1 cut(s)	510
BseXI	GCAGC	1 cut(s)	620
BsgI	GTGCAG	1 cut(s)	627
Bsh1285I	CGRYCG	1 cut(s)	697
BshFI	GGCC	2 cut(s)	540, 584
BshNI	GGYRCC	1 cut(s)	707
BsiEI	CGRYCG	1 cut(s)	697
BsiHKAI	GWGCWC	1 cut(s)	510
BsmAI	GTCTC	1 cut(s)	513
BsnI	GGCC	2 cut(s)	540, 584
Bsp1286I	GDGCHC	1 cut(s)	510
Bsp19I	CCATGG	1 cut(s)	228
BspACI	CCGC	7 cut(s)	4, 165, 266, 275, 278, 702, 705
BspANI	GGCC	2 cut(s)	540, 584
BspCNI	CTCAG	2 cut(s)	161, 306
BspHI	TCATGA	1 cut(s)	495
BspLI	GGNNCC	1 cut(s)	709
BspT107I	GGYRCC	1 cut(s)	707
BsrI	ACTGG	2 cut(s)	160, 302
BssECI	CCNNGG	6 cut(s)	228, 255, 336, 384, 585, 697
BssT1I	CCWWGG	2 cut(s)	228, 384
Bst2UI	CCWGG	1 cut(s)	587
Bst4CI	ACNGT	4 cut(s)	340, 352, 698, 757
Bst6I	CTCTTC	1 cut(s)	724
BstC8I	GCNNGC	3 cut(s)	364, 478, 651
BstDEI	CTNAG	2 cut(s)	148, 314
BstDSI	CCRYGG	3 cut(s)	228, 336, 697
BstMAI	GTCTC	1 cut(s)	513
BstMCI	CGRYCG	1 cut(s)	697
BstMWI	GCNNNNNNNGC	3 cut(s)	272, 332, 699
BstNI	CCWGG	1 cut(s)	587
BstPAI	GACNNNNGTC	1 cut(s)	305
BstSCI	CCNGG	1 cut(s)	585
BstSLI	GKGCMC	1 cut(s)	510
BstV1I	GCAGC	1 cut(s)	620
BstXI	CCANNNNNNTGG	1 cut(s)	385
BsuRI	GGCC	2 cut(s)	540, 584
BtgI	CCRYGG	3 cut(s)	228, 336, 697
BtgZI	GCGATG	1 cut(s)	615
BtsIMutI	CAGTG	1 cut(s)	762
Cac8I	GCNNGC	3 cut(s)	364, 478, 651
CaiI	CAGNNNCTG	1 cut(s)	155
CciI	TCATGA	1 cut(s)	495
Cfr13I	GGNCC	2 cut(s)	538, 583
CseI	GACGC	1 cut(s)	397
Csp6I	GTAC	2 cut(s)	451, 688
CviAII	CATG	4 cut(s)	229, 496, 571, 619
CviQI	GTAC	2 cut(s)	451, 688
DdeI	CTNAG	2 cut(s)	148, 314
Eam1104I	CTCTTC	1 cut(s)	724
EarI	CTCTTC	1 cut(s)	724
EciI	GGCGGA	1 cut(s)	281
Eco130I	CCWWGG	2 cut(s)	228, 384
EcoO109I	RGGNCCY	1 cut(s)	538
EcoRII	CCWGG	1 cut(s)	585
EcoT14I	CCWWGG	2 cut(s)	228, 384
ErhI	CCWWGG	2 cut(s)	228, 384
FaeI	CATG	4 cut(s)	232, 499, 574, 622
FaiI	YATR	9 cut(s)	89, 170, 199, 230, 486, 497, 572, 620, 752
FatI	CATG	4 cut(s)	228, 495, 570, 618
Fnu4HI	GCNGC	4 cut(s)	165, 276, 609, 703
Fsp4HI	GCNGC	4 cut(s)	165, 276, 609, 703
FspBI	CTAG	3 cut(s)	71, 236, 629
GluI	GCNGC	4 cut(s)	165, 276, 609, 703
HaeIII	GGCC	2 cut(s)	540, 584
HgaI	GACGC	1 cut(s)	397
Hin1II	CATG	4 cut(s)	232, 499, 574, 622
HinfI	GANTC	2 cut(s)	110, 732
HphI	GGTGA	3 cut(s)	95, 292, 352
Hpy166II	GTNNAC	2 cut(s)	451, 508
Hpy188I	TCNGA	3 cut(s)	315, 518, 731
Hpy188III	TCNNGA	4 cut(s)	71, 236, 496, 682
Hpy8I	GTNNAC	2 cut(s)	451, 508
Hpy99I	CGWCG	1 cut(s)	295
HpyAV	CCTTC	4 cut(s)	491, 551, 625, 631
HpyCH4III	ACNGT	4 cut(s)	340, 352, 698, 757
HpyCH4IV	ACGT	2 cut(s)	50, 489
HpyCH4V	TGCA	6 cut(s)	12, 347, 443, 476, 508, 608
HpyF10VI	GCNNNNNNNGC	3 cut(s)	272, 332, 699
HpyF3I	CTNAG	2 cut(s)	148, 314
HpySE526I	ACGT	2 cut(s)	50, 489
Hsp92II	CATG	4 cut(s)	232, 499, 574, 622
LpnPI	CCDG	8 cut(s)	65, 79, 141, 283, 453, 572, 599, 731
Lsp1109I	GCAGC	1 cut(s)	620
MaeI	CTAG	3 cut(s)	71, 236, 629
MaeII	ACGT	2 cut(s)	50, 489
MaeIII	GTNAC	5 cut(s)	83, 280, 340, 409, 671
MboII	GAAGA	5 cut(s)	29, 130, 585, 646, 711
MhlI	GDGCHC	1 cut(s)	510
MluCI	AATT	5 cut(s)	75, 129, 220, 471, 787
MlyI	GAGTC	1 cut(s)	726
MnlI	CCTC	3 cut(s)	250, 309, 746
MseI	TTAA	2 cut(s)	32, 104
MspR9I	CCNGG	1 cut(s)	587
MvaI	CCWGG	1 cut(s)	587
MwoI	GCNNNNNNNGC	3 cut(s)	272, 332, 699
NcoI	CCATGG	1 cut(s)	228
NlaIII	CATG	4 cut(s)	232, 499, 574, 622
NlaIV	GGNNCC	1 cut(s)	709
NmeAIII	GCCGAG	1 cut(s)	280
NmuCI	GTSAC	5 cut(s)	83, 280, 340, 409, 671
PagI	TCATGA	1 cut(s)	495
PfeI	GAWTC	1 cut(s)	110
PkrI	GCNGC	4 cut(s)	166, 277, 610, 704
PleI	GAGTC	1 cut(s)	726
PpsI	GAGTC	1 cut(s)	726
PshAI	GACNNNNGTC	1 cut(s)	305
PsiI	TTATAA	1 cut(s)	752
Psp6I	CCWGG	1 cut(s)	585
PspGI	CCWGG	1 cut(s)	585
PspN4I	GGNNCC	1 cut(s)	709
PspPI	GGNCC	2 cut(s)	538, 583
PstNI	CAGNNNCTG	1 cut(s)	155
RsaI	GTAC	2 cut(s)	452, 689
RsaNI	GTAC	2 cut(s)	451, 688
SaqAI	TTAA	2 cut(s)	32, 104
SatI	GCNGC	4 cut(s)	165, 276, 609, 703
Sau96I	GGNCC	2 cut(s)	538, 583
ScaI	AGTACT	1 cut(s)	689
SchI	GAGTC	1 cut(s)	726
ScrFI	CCNGG	1 cut(s)	587
SduI	GDGCHC	1 cut(s)	510
SetI	ASST	8 cut(s)	43, 47, 53, 466, 492, 617, 630, 659
Sse9I	AATT	5 cut(s)	75, 129, 220, 471, 787
SsiI	CCGC	7 cut(s)	4, 165, 266, 275, 278, 702, 705
SspMI	CTAG	3 cut(s)	71, 236, 629
StyD4I	CCNGG	1 cut(s)	585
StyI	CCWWGG	2 cut(s)	228, 384
TaaI	ACNGT	4 cut(s)	340, 352, 698, 757
TaiI	ACGT	2 cut(s)	53, 492
TaqI	TCGA	1 cut(s)	681
TasI	AATT	5 cut(s)	75, 129, 220, 471, 787
TatI	WGTACW	2 cut(s)	450, 687
TauI	GCSGC	3 cut(s)	167, 278, 705
TfiI	GAWTC	1 cut(s)	110
Tru1I	TTAA	2 cut(s)	32, 104
Tru9I	TTAA	2 cut(s)	32, 104
TscAI	CASTG	1 cut(s)	762
TseFI	GTSAC	5 cut(s)	83, 280, 340, 409, 671
TseI	GCWGC	1 cut(s)	608
Tsp45I	GTSAC	5 cut(s)	83, 280, 340, 409, 671
TspDTI	ATGAA	3 cut(s)	473, 484, 607
TspGWI	ACGGA	1 cut(s)	308
TspRI	CASTG	1 cut(s)	762
VneI	GTGCAC	1 cut(s)	506
XapI	RAATTY	1 cut(s)	75
XbaI	TCTAGA	2 cut(s)	70, 235
XcmI	CCANNNNNNNNNTGG	1 cut(s)	385
XspI	CTAG	3 cut(s)	71, 236, 629
ZrmI	AGTACT	1 cut(s)	689

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.