Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019610.1

Orthogroup ID

OG0012085

Physical Location & Seq

Genomic Coordinates Forward (+)

2546 .. 3357

Gene Structure 812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019610.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

atggcgctagaaaacggagagaaaccagggtctagtttcgtggcggtgagaaaaccaaatgattgtaccattctcttgctgagagtggttgcattcttggccacacttgccgggactctagtgatggcactcaacaaagaaaccaaaaccttggttgttgccactattgggactactccaattaaagccactctcacagccaagtttcaacacactccagcaaatgtgttctttgttgtagctaatgcaatggccagccttcacaacttgttgatgataatagtgcaactttgcggaggcaagttcaaagacaagggtcttcgccttgtgatgatggccattttagacatgatgactgtggccctgctatcttcaggcgatggtgcagctaccttcatggcacatctagcgaagaaaggtaattcgcatgcaaggtggaacaaaatctgtgacaagtttggcaagttctgcgaccatggtggtggcgctctaattgcttcttatattgggctccttctcttggtggttatcacagtgttgtccatcatcaagctactcaaggcgaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0048037 GO:0051536 GO:0051540 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

189

Amino Acids

20.13

Weight (kDa)

9.85

Isoelectric Point (pI)

21.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012085)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20390 AT5G44550
fragaria_vesca	FvH4_3g11410
malus_domestica	MD05G1263600.v1.1 MD10G1241300.v1.1
prunus_persica	Prupe.4G101900_v2.0.a1
pyrus_communis	pycom05g24760 pycom10g20230
rosa_chinensis	RchiOBHm_Chr5g0018351
rosa_laevigata	RLG00000032354
rosa_multiflora	Rmu_sc0019610.1_g000001 Rmu_sc0029003.1_g000002
rosa_roxburghii	Rroxscaffold_1G00059390
rosa_rugosa	Rorug05G0041700.1
rosa_samantha	Rh5AG135000 Rh5BG133600 Rh5CG145400 Rh5DG135000
rosa_wichuraiana	Rw5G011790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	44, 294
AcoI	YGGCCR	3 cut(s)	99, 252, 336
AcuI	CTGAAG	1 cut(s)	357
AfaI	GTAC	1 cut(s)	67
AfiI	CCNNNNNNNGG	2 cut(s)	168, 520
AgsI	TTSAA	2 cut(s)	209, 307
AjnI	CCWGG	1 cut(s)	25
AluBI	AGCT	3 cut(s)	242, 389, 553
AluI	AGCT	3 cut(s)	242, 389, 553
AoxI	GGCC	4 cut(s)	99, 252, 336, 360
ApeKI	GCWGC	1 cut(s)	386
AspLEI	GCGC	2 cut(s)	7, 488
AspS9I	GGNCC	1 cut(s)	361
AsuC2I	CCSGG	1 cut(s)	112
AsuHPI	GGTGA	1 cut(s)	58
BalI	TGGCCA	3 cut(s)	101, 254, 338
BanII	GRGCYC	1 cut(s)	513
BbsI	GAAGAC	1 cut(s)	311
BbvI	GCAGC	1 cut(s)	398
BccI	CCATC	4 cut(s)	118, 328, 374, 551
BciT130I	CCWGG	1 cut(s)	27
BcnI	CCSGG	1 cut(s)	112
BfaI	CTAG	4 cut(s)	8, 33, 119, 407
BfoI	RGCGCY	2 cut(s)	8, 489
BisI	GCNGC	1 cut(s)	387
BlsI	GCNGC	1 cut(s)	388
Bme1390I	CCNGG	2 cut(s)	27, 112
BmgT120I	GGNCC	1 cut(s)	361
BmiI	GGNNCC	1 cut(s)	512
BmrFI	CCNGG	2 cut(s)	27, 112
BoxI	GACNNNNGTC	1 cut(s)	315
BpiI	GAAGAC	1 cut(s)	311
BpmI	CTGGAG	1 cut(s)	201
BpuEI	CTTGAG	1 cut(s)	542
BpuMI	CCSGG	1 cut(s)	112
BsaJI	CCNNGG	3 cut(s)	26, 150, 475
Bsc4I	CCNNNNNNNGG	2 cut(s)	168, 520
Bse3DI	GCAATG	1 cut(s)	255
BseBI	CCWGG	1 cut(s)	27
BseDI	CCNNGG	3 cut(s)	26, 150, 475
BseLI	CCNNNNNNNGG	2 cut(s)	168, 520
BseMI	GCAATG	1 cut(s)	255
BseMII	CTCAG	1 cut(s)	71
BseXI	GCAGC	1 cut(s)	398
BsgI	GTGCAG	1 cut(s)	405
BshFI	GGCC	4 cut(s)	101, 254, 338, 362
BsiSI	CCGG	1 cut(s)	111
BslFI	GGGAC	2 cut(s)	127, 184
BslI	CCNNNNNNNGG	2 cut(s)	168, 520
BsmFI	GGGAC	2 cut(s)	127, 184
BsmI	GAATGC	1 cut(s)	92
BsnI	GGCC	4 cut(s)	101, 254, 338, 362
Bsp1286I	GDGCHC	1 cut(s)	513
Bsp19I	CCATGG	1 cut(s)	475
BspACI	CCGC	2 cut(s)	44, 294
BspANI	GGCC	4 cut(s)	101, 254, 338, 362
BspCNI	CTCAG	1 cut(s)	72
BspLI	GGNNCC	1 cut(s)	512
BsrDI	GCAATG	1 cut(s)	255
BssECI	CCNNGG	3 cut(s)	26, 150, 475
BssT1I	CCWWGG	2 cut(s)	150, 475
Bst2UI	CCWGG	1 cut(s)	27
Bst4CI	ACNGT	2 cut(s)	358, 535
BstAPI	GCANNNNNTGC	1 cut(s)	468
BstC8I	GCNNGC	2 cut(s)	256, 429
BstDEI	CTNAG	1 cut(s)	80
BstDSI	CCRYGG	1 cut(s)	475
BstH2I	RGCGCY	2 cut(s)	8, 489
BstHHI	GCGC	2 cut(s)	7, 488
BstMWI	GCNNNNNNNGC	5 cut(s)	98, 107, 407, 468, 494
BstNI	CCWGG	1 cut(s)	27
BstNSI	RCATGY	1 cut(s)	431
BstPAI	GACNNNNGTC	1 cut(s)	315
BstSCI	CCNGG	2 cut(s)	25, 110
BstV1I	GCAGC	1 cut(s)	398
BstV2I	GAAGAC	1 cut(s)	311
BstXI	CCANNNNNNTGG	2 cut(s)	151, 482
BsuRI	GGCC	4 cut(s)	101, 254, 338, 362
BtgI	CCRYGG	1 cut(s)	475
BtgZI	GCGATG	1 cut(s)	393
BtsIMutI	CAGTG	1 cut(s)	540
Cac8I	GCNNGC	2 cut(s)	256, 429
CfoI	GCGC	2 cut(s)	7, 488
Cfr13I	GGNCC	1 cut(s)	361
Csp6I	GTAC	1 cut(s)	66
CviAII	CATG	4 cut(s)	349, 397, 428, 476
CviQI	GTAC	1 cut(s)	66
DdeI	CTNAG	1 cut(s)	80
EaeI	YGGCCR	3 cut(s)	99, 252, 336
Eco130I	CCWWGG	2 cut(s)	150, 475
Eco24I	GRGCYC	1 cut(s)	513
Eco57I	CTGAAG	1 cut(s)	357
EcoRII	CCWGG	1 cut(s)	25
EcoT14I	CCWWGG	2 cut(s)	150, 475
EcoT38I	GRGCYC	1 cut(s)	513
ErhI	CCWWGG	2 cut(s)	150, 475
FaeI	CATG	4 cut(s)	352, 400, 431, 479
FaiI	YATR	5 cut(s)	350, 398, 429, 477, 504
FaqI	GGGAC	2 cut(s)	127, 184
FatI	CATG	4 cut(s)	348, 396, 427, 475
Fnu4HI	GCNGC	1 cut(s)	387
FriOI	GRGCYC	1 cut(s)	513
Fsp4HI	GCNGC	1 cut(s)	387
FspBI	CTAG	4 cut(s)	8, 33, 119, 407
GlaI	GCGC	2 cut(s)	6, 487
GluI	GCNGC	1 cut(s)	387
GsuI	CTGGAG	1 cut(s)	201
HaeII	RGCGCY	2 cut(s)	8, 489
HaeIII	GGCC	4 cut(s)	101, 254, 338, 362
HapII	CCGG	1 cut(s)	111
HhaI	GCGC	2 cut(s)	7, 488
Hin1II	CATG	4 cut(s)	352, 400, 431, 479
Hin6I	GCGC	2 cut(s)	5, 486
HinP1I	GCGC	2 cut(s)	5, 486
HinfI	GANTC	1 cut(s)	115
HpaII	CCGG	1 cut(s)	111
HphI	GGTGA	1 cut(s)	58
HpyAV	CCTTC	3 cut(s)	269, 403, 524
HpyCH4III	ACNGT	2 cut(s)	358, 535
HpyCH4V	TGCA	5 cut(s)	92, 248, 286, 386, 431
HpyF10VI	GCNNNNNNNGC	5 cut(s)	98, 107, 407, 468, 494
HpyF3I	CTNAG	1 cut(s)	80
Hsp92II	CATG	4 cut(s)	352, 400, 431, 479
HspAI	GCGC	2 cut(s)	5, 486
LmnI	GCTCC	1 cut(s)	516
LpnPI	CCDG	7 cut(s)	12, 39, 124, 231, 268, 360, 377
Lsp1109I	GCAGC	1 cut(s)	398
MaeI	CTAG	4 cut(s)	8, 33, 119, 407
MaeIII	GTNAC	1 cut(s)	449
MboII	GAAGA	3 cut(s)	311, 363, 424
MhlI	GDGCHC	1 cut(s)	513
MlsI	TGGCCA	3 cut(s)	101, 254, 338
MluCI	AATT	3 cut(s)	180, 421, 492
MluNI	TGGCCA	3 cut(s)	101, 254, 338
MlyI	GAGTC	1 cut(s)	109
MnlI	CCTC	1 cut(s)	290
Mox20I	TGGCCA	3 cut(s)	101, 254, 338
MscI	TGGCCA	3 cut(s)	101, 254, 338
MseI	TTAA	1 cut(s)	183
MslI	CAYNNNNRTG	1 cut(s)	480
Msp20I	TGGCCA	3 cut(s)	101, 254, 338
MspI	CCGG	1 cut(s)	111
MspR9I	CCNGG	2 cut(s)	27, 112
Mva1269I	GAATGC	1 cut(s)	92
MvaI	CCWGG	1 cut(s)	27
MwoI	GCNNNNNNNGC	5 cut(s)	98, 107, 407, 468, 494
NciI	CCSGG	1 cut(s)	112
NcoI	CCATGG	1 cut(s)	475
NlaIII	CATG	4 cut(s)	352, 400, 431, 479
NlaIV	GGNNCC	1 cut(s)	512
NmuCI	GTSAC	1 cut(s)	449
NspI	RCATGY	1 cut(s)	431
PaeI	GCATGC	1 cut(s)	431
PctI	GAATGC	1 cut(s)	92
PkrI	GCNGC	1 cut(s)	388
PleI	GAGTC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	109
PshAI	GACNNNNGTC	1 cut(s)	315
Psp6I	CCWGG	1 cut(s)	25
PspGI	CCWGG	1 cut(s)	25
PspN4I	GGNNCC	1 cut(s)	512
PspPI	GGNCC	1 cut(s)	361
RsaI	GTAC	1 cut(s)	67
RsaNI	GTAC	1 cut(s)	66
RseI	CAYNNNNRTG	1 cut(s)	480
SaqAI	TTAA	1 cut(s)	183
SatI	GCNGC	1 cut(s)	387
Sau96I	GGNCC	1 cut(s)	361
SchI	GAGTC	1 cut(s)	109
ScrFI	CCNGG	2 cut(s)	27, 112
SduI	GDGCHC	1 cut(s)	513
SetI	ASST	7 cut(s)	152, 244, 391, 395, 421, 437, 555
SmiMI	CAYNNNNRTG	1 cut(s)	480
SmlI	CTYRAG	1 cut(s)	557
SmoI	CTYRAG	1 cut(s)	557
SphI	GCATGC	1 cut(s)	431
Sse9I	AATT	3 cut(s)	180, 421, 492
SsiI	CCGC	2 cut(s)	44, 294
SspMI	CTAG	4 cut(s)	8, 33, 119, 407
StyD4I	CCNGG	2 cut(s)	25, 110
StyI	CCWWGG	2 cut(s)	150, 475
TaaI	ACNGT	2 cut(s)	358, 535
TasI	AATT	3 cut(s)	180, 421, 492
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TscAI	CASTG	1 cut(s)	540
TseFI	GTSAC	1 cut(s)	449
TseI	GCWGC	1 cut(s)	386
Tsp45I	GTSAC	1 cut(s)	449
TspDTI	ATGAA	1 cut(s)	385
TspGWI	ACGGA	1 cut(s)	30
TspRI	CASTG	1 cut(s)	540
XceI	RCATGY	1 cut(s)	431
XspI	CTAG	4 cut(s)	8, 33, 119, 407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.