FvH4_3g12730

RNA-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0015504
Physical Location & Seq
Forward (+)
7617783 .. 7620493
2711 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g12730.t1

Sequence Viewer

Length: 468 bp
ATGTGGGCAGCTTCACTCTCTCTCCCATCCTACAGCTATGGAAAACCCACTAACACTATCCCAGCTTCTGGGTCAAATCGTAGGGCACCCAAGTCTTTGAAGCTCAGAGCTTCCTTCTACAACTATCCTCTCGCAAGCAGAATCATGGTCAAAAACATACCATATTCCACCAGTGAAAATAGTCTGCAGCAGAAGTTTTCAAATTTCGGAGAGATAGCTGAAGTTAAACTAGTGCAGGATGAAATTTCAAAGAGGTCCAAGGGGTTTGCATTTATTCAGTATACCAGCCAAGATGATGCAATGCTTGCCCTGGAAAATATGGACCGCCAGACTCTTGATGGCAGGGTCATCTACGTAGAGCTTGCAAAACCAGGTAAAGATGCTTATGCAGGGTACCCAAAAACCTCCGGACCCCCAAAGAAGCAGTATATGCAGCAGCAAGAGGAAGTCACAGACTGCTGGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

156

Amino Acids

17.53

Weight (kDa)

9.21

Isoelectric Point (pI)

46.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 48 - 117 8.8e-21 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015504)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G20030
fragaria_vesca FvH4_3g12730
malus_domestica MD10G1228700.v1.1
prunus_persica Prupe.4G116100_v2.0.a1
pyrus_communis pycom10g19220
rosa_chinensis RchiOBHm_Chr5g0020731
rosa_laevigata RLG00000032556
rosa_multiflora Rmu_sc0002527.1_g000003
rosa_roxburghii Rroxscaffold_1G00057570 Rroxscaffold_1G00057580
rosa_rugosa Rorug05G0062600
rosa_samantha Rh5AG152400 Rh5BG152100 Rh5CG163600 Rh5DG151600
rosa_wichuraiana Rw5G013510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 393
AccB1I GGYRCC 2 cut(s) 85, 393
AccB7I CCANNNNNTGG 1 cut(s) 68
AccI GTMKAC 1 cut(s) 281
AccIII TCCGGA 1 cut(s) 407
AciI CCGC 1 cut(s) 325
AcsI RAATTY 2 cut(s) 202, 243
AcuI CTGAAG 1 cut(s) 240
AfaI GTAC 2 cut(s) 395, 464
AfiI CCNNNNNNNGG 1 cut(s) 68
AgsI TTSAA 3 cut(s) 100, 201, 249
AhlI ACTAGT 1 cut(s) 229
AjnI CCWGG 2 cut(s) 309, 370
AluBI AGCT 7 cut(s) 11, 36, 65, 103, 110, 218, 361
AluI AGCT 7 cut(s) 11, 36, 65, 103, 110, 218, 361
AlwNI CAGNNNCTG 1 cut(s) 68
Aor13HI TCCGGA 1 cut(s) 407
ApeKI GCWGC 4 cut(s) 8, 187, 433, 436
ApoI RAATTY 2 cut(s) 202, 243
Asp718I GGTACC 1 cut(s) 393
AspS9I GGNCC 3 cut(s) 255, 322, 410
AvaII GGWCC 3 cut(s) 255, 322, 410
BaeGI GKGCMC 1 cut(s) 88
BanI GGYRCC 2 cut(s) 85, 393
BbvI GCAGC 4 cut(s) 20, 199, 445, 448
BccI CCATC 2 cut(s) 34, 332
BciT130I CCWGG 2 cut(s) 311, 372
BcuI ACTAGT 1 cut(s) 229
BfaI CTAG 1 cut(s) 230
BfmI CTRYAG 2 cut(s) 31, 185
BisI GCNGC 4 cut(s) 9, 188, 434, 437
BlsI GCNGC 4 cut(s) 10, 189, 435, 438
Bme1390I CCNGG 2 cut(s) 311, 372
Bme18I GGWCC 3 cut(s) 255, 322, 410
BmgT120I GGNCC 3 cut(s) 255, 322, 410
BmiI GGNNCC 3 cut(s) 87, 395, 412
BmrFI CCNGG 2 cut(s) 311, 372
BmsI GCATC 2 cut(s) 286, 370
BsaAI YACGTR 1 cut(s) 355
BsaJI CCNNGG 2 cut(s) 258, 309
BsaWI WCCGGW 1 cut(s) 407
BsaXI ACNNNNNCTCC 2 cut(s) 6, 36
Bsc4I CCNNNNNNNGG 1 cut(s) 68
Bse1I ACTGG 1 cut(s) 171
Bse3DI GCAATG 1 cut(s) 306
BseAI TCCGGA 1 cut(s) 407
BseBI CCWGG 2 cut(s) 311, 372
BseDI CCNNGG 2 cut(s) 258, 309
BseGI GGATG 2 cut(s) 26, 244
BseLI CCNNNNNNNGG 1 cut(s) 68
BseMI GCAATG 1 cut(s) 306
BseMII CTCAG 1 cut(s) 118
BseNI ACTGG 1 cut(s) 171
BseSI GKGCMC 1 cut(s) 88
BseXI GCAGC 4 cut(s) 20, 199, 445, 448
BseYI CCCAGC 1 cut(s) 61
BsgI GTGCAG 1 cut(s) 254
BshNI GGYRCC 2 cut(s) 85, 393
BsiSI CCGG 1 cut(s) 408
BslI CCNNNNNNNGG 1 cut(s) 68
Bsp1286I GDGCHC 1 cut(s) 88
Bsp13I TCCGGA 1 cut(s) 407
BspACI CCGC 1 cut(s) 325
BspCNI CTCAG 1 cut(s) 117
BspEI TCCGGA 1 cut(s) 407
BspLI GGNNCC 3 cut(s) 87, 395, 412
BspMAI CTGCAG 1 cut(s) 189
BspT107I GGYRCC 2 cut(s) 85, 393
BsrDI GCAATG 1 cut(s) 306
BsrI ACTGG 1 cut(s) 171
BssECI CCNNGG 2 cut(s) 258, 309
BssNAI GTATAC 1 cut(s) 282
BssT1I CCWWGG 1 cut(s) 258
Bst1107I GTATAC 1 cut(s) 282
Bst2UI CCWGG 2 cut(s) 311, 372
BstAPI GCANNNNNTGC 2 cut(s) 305, 430
BstBAI YACGTR 1 cut(s) 355
BstC8I GCNNGC 3 cut(s) 136, 306, 363
BstDEI CTNAG 1 cut(s) 104
BstF5I GGATG 2 cut(s) 26, 244
BstMWI GCNNNNNNNGC 2 cut(s) 305, 430
BstNI CCWGG 2 cut(s) 311, 372
BstSCI CCNGG 2 cut(s) 309, 370
BstSFI CTRYAG 2 cut(s) 31, 185
BstSLI GKGCMC 1 cut(s) 88
BstSNI TACGTA 1 cut(s) 355
BstV1I GCAGC 4 cut(s) 20, 199, 445, 448
BstZ17I GTATAC 1 cut(s) 282
BtsCI GGATG 2 cut(s) 26, 244
BtsIMutI CAGTG 1 cut(s) 178
Cac8I GCNNGC 3 cut(s) 136, 306, 363
CaiI CAGNNNCTG 1 cut(s) 68
Cfr13I GGNCC 3 cut(s) 255, 322, 410
CsiI ACCWGGT 1 cut(s) 370
Csp6I GTAC 2 cut(s) 394, 463
CviAII CATG 1 cut(s) 145
CviJI RGCY 8 cut(s) 11, 36, 65, 103, 110, 218, 288, 361
CviKI_1 RGCY 8 cut(s) 11, 36, 65, 103, 110, 218, 288, 361
CviQI GTAC 2 cut(s) 394, 463
DdeI CTNAG 1 cut(s) 104
Eco105I TACGTA 1 cut(s) 355
Eco130I CCWWGG 1 cut(s) 258
Eco47I GGWCC 3 cut(s) 255, 322, 410
Eco57I CTGAAG 1 cut(s) 240
EcoRII CCWGG 2 cut(s) 309, 370
EcoT14I CCWWGG 1 cut(s) 258
ErhI CCWWGG 1 cut(s) 258
FaeI CATG 1 cut(s) 148
FaiI YATR 9 cut(s) 39, 146, 158, 163, 282, 320, 387, 429, 431
FatI CATG 1 cut(s) 144
FblI GTMKAC 1 cut(s) 281
Fnu4HI GCNGC 4 cut(s) 9, 188, 434, 437
FokI GGATG 2 cut(s) 13, 251
Fsp4HI GCNGC 4 cut(s) 9, 188, 434, 437
FspBI CTAG 1 cut(s) 230
GluI GCNGC 4 cut(s) 9, 188, 434, 437
GsaI CCCAGC 1 cut(s) 65
HapII CCGG 1 cut(s) 408
Hin1II CATG 1 cut(s) 148
HinfI GANTC 2 cut(s) 141, 331
HpaII CCGG 1 cut(s) 408
Hpy166II GTNNAC 1 cut(s) 282
Hpy188I TCNGA 2 cut(s) 107, 209
Hpy188III TCNNGA 2 cut(s) 335, 408
Hpy8I GTNNAC 1 cut(s) 282
HpyAV CCTTC 1 cut(s) 124
HpyCH4IV ACGT 1 cut(s) 354
HpyCH4V TGCA 7 cut(s) 187, 235, 269, 299, 365, 389, 433
HpyF10VI GCNNNNNNNGC 2 cut(s) 305, 430
HpyF3I CTNAG 1 cut(s) 104
HpySE526I ACGT 1 cut(s) 354
Hsp92II CATG 1 cut(s) 148
Kpn2I TCCGGA 1 cut(s) 407
KpnI GGTACC 1 cut(s) 397
Lsp1109I GCAGC 4 cut(s) 20, 199, 445, 448
LweI GCATC 2 cut(s) 286, 370
MabI ACCWGGT 1 cut(s) 370
MaeI CTAG 1 cut(s) 230
MaeII ACGT 1 cut(s) 354
MaeIII GTNAC 1 cut(s) 448
MhlI GDGCHC 1 cut(s) 88
MluCI AATT 2 cut(s) 202, 243
MlyI GAGTC 1 cut(s) 325
MnlI CCTC 4 cut(s) 138, 246, 415, 436
MroI TCCGGA 1 cut(s) 407
MseI TTAA 1 cut(s) 225
MspI CCGG 1 cut(s) 408
MspR9I CCNGG 2 cut(s) 311, 372
MvaI CCWGG 2 cut(s) 311, 372
MwoI GCNNNNNNNGC 2 cut(s) 305, 430
NlaIII CATG 1 cut(s) 148
NlaIV GGNNCC 3 cut(s) 87, 395, 412
NmuCI GTSAC 1 cut(s) 448
PfeI GAWTC 1 cut(s) 141
PflMI CCANNNNNTGG 1 cut(s) 68
PkrI GCNGC 4 cut(s) 10, 189, 435, 438
PleI GAGTC 1 cut(s) 325
PpsI GAGTC 1 cut(s) 325
Ppu21I YACGTR 1 cut(s) 355
Psp6I CCWGG 2 cut(s) 309, 370
PspFI CCCAGC 1 cut(s) 61
PspGI CCWGG 2 cut(s) 309, 370
PspN4I GGNNCC 3 cut(s) 87, 395, 412
PspPI GGNCC 3 cut(s) 255, 322, 410
PstI CTGCAG 1 cut(s) 189
PstNI CAGNNNCTG 1 cut(s) 68
RsaI GTAC 2 cut(s) 395, 464
RsaNI GTAC 2 cut(s) 394, 463
SaqAI TTAA 1 cut(s) 225
SatI GCNGC 4 cut(s) 9, 188, 434, 437
Sau96I GGNCC 3 cut(s) 255, 322, 410
SchI GAGTC 1 cut(s) 325
ScrFI CCNGG 2 cut(s) 311, 372
SduI GDGCHC 1 cut(s) 88
SexAI ACCWGGT 1 cut(s) 370
SfaNI GCATC 2 cut(s) 286, 370
SfcI CTRYAG 2 cut(s) 31, 185
SinI GGWCC 3 cut(s) 255, 322, 410
SnaBI TACGTA 1 cut(s) 355
SpeI ACTAGT 1 cut(s) 229
Sse9I AATT 2 cut(s) 202, 243
SsiI CCGC 1 cut(s) 325
SspMI CTAG 1 cut(s) 230
StyD4I CCNGG 2 cut(s) 309, 370
StyI CCWWGG 1 cut(s) 258
TaiI ACGT 1 cut(s) 357
TasI AATT 2 cut(s) 202, 243
TfiI GAWTC 1 cut(s) 141
Tru1I TTAA 1 cut(s) 225
Tru9I TTAA 1 cut(s) 225
TscAI CASTG 1 cut(s) 178
TseFI GTSAC 1 cut(s) 448
TseI GCWGC 4 cut(s) 8, 187, 433, 436
Tsp45I GTSAC 1 cut(s) 448
TspDTI ATGAA 1 cut(s) 255
TspRI CASTG 1 cut(s) 178
Van91I CCANNNNNTGG 1 cut(s) 68
VpaK11BI GGWCC 3 cut(s) 255, 322, 410
XapI RAATTY 2 cut(s) 202, 243
XcmI CCANNNNNNNNNTGG 1 cut(s) 335
XmiI GTMKAC 1 cut(s) 281
XspI CTAG 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.