Rorug05G0062600

RNA-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0013637
Physical Location & Seq
Forward (+)
5430649 .. 5436357
5709 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0062600.1

Sequence Viewer

Length: 1941 bp
ATGGCCAATTCTTCGGGCCGTGTTGACTTCTGGGATGCTGAAAAGATGCTTGATCTTTATCTGCACGATTATATGGTGAAGAAGAATATGCACTCCACTGCTGAAATTTTCAGGAGAGAAGCTGATGTCTATTCTGAAAGTCCTGTTGTTATTGATACCAAGGAGGGGTTCTTAAATGAATGGTGGACTTTGTTTTATGATGTGTATTCGTCTAGGACACAATTGAAGCATCAAGATCAGGCCAAGGTTGAAGCACCGGTTCAGGAAAGGAGAGAGAATGAGCAGCAACGTAAACATCCAAGAGTGCCTGAAGATTTACCAAGAGTGCCTACTGCACCTTTAGCAACCAAGCAAAAGAGGTCTCGACGAACGCCTAGGACCAGGAGTATTGACTACTTTAGTAAGTGGTTGGGGATACCAGGTGGAGATTTTGGACCCAATTTGCATCCGCTTCGTGTCAATGATCTGAATATCTCAAAGTCACTTGCAACCAGTTCAAGCCCTCTGCATCAGCAACTCCTCAAGAATATTGCTCAAATGCAGCAAGTGCAGGACAACAGAAATGTCATTAGCTTCAGCAGGACTAACAACATTGGCTCTAAGGTTTTTGGACTGCATAACTCCTTACTCCCACTAACTGGAGCTCAGGATGCAGGTATAAGCGGAGTTCAACCTGGACCACAAATTGGAAGGCCTTTAAAAGTAGTAAGCGCAGCTTTGCAGGCTCCAAACCACCAACAACTGATTGAGACATCAACAGCAGAACATCAGCATCCACCTTTGAGTGATCAGATGGTGGGTCGCCTCTTGAGACAAATTGCAGAGCCCCAGCAACAACCTGATCAGCAGCAGTTACTAGAGGATGACAGAGAGAGGAGGACAGCATCAGGAGCAGGAGACAGTCATTTGGAAAATACGAGTGCTAATGAAGATGTCCCTGTGGAAGAAAATACCGAGTCTTTCTTGTCCTATGAGGATGACAGTGCTGCTGGTGGTACAAGCACTCCATTCAAGGCTTCAAAGCGTCGTGGTGGGAAAAAAAAGCACGAAAGGGGCTTCAAGTTCGAAGAAATTTGTTCTCTCCATTCAAGCATGGCTAAGGTTGTATGCTGCCATTTTTCATCAAATGGGACGTTGTTAGCTAGTGCAGGGCATGAAAAAAAGGTTCTGATTTGGAACATGGAAACTTTTGATGTTGTTAAAACTTTCGAAGAGCATTCTCATCTCATTACAGATGTACGGTTTAGACCAAATTCAACAACGTTTGCAACATCTTCGTTTGATAGAAATGTGAAGATATGGGATGCAGCCAAACCAAGTGAATCAATATCCAAGCTTGAAGGGCACAATGAGCATGTAATGTCAGTGGATTTTCACCCAAGGAAGTTCAATCTCCTTTCATCATGCGATAGTAACGATGAAATCCGACTGTGGAATGTCAACCAATCTAAGTGCACACGCATGTTTAAGGGAGCAACTAAACAAGTCAGATTCCAGCCTCGATTTGGAAAATATTTGGCTGCTGCTTCAGGAAATAGTGTCAATACTTTTGATGTTGAGACTGCCAGTTTCGACTTGTATTCGAAGGGATCTGGACATGCCAAAGATGTCCTTTCAATTTGCTGGGATACAAGTGGGAAGTATCTTGCCTCTGTTAGTGAAGACAGTGCACGGATTTGGTCAACTGCATCAAGCGGAAAATGCATATATGAACTCCACTCAAATGGCAACAAATTCCAATCATGCACATTTCATCCTGGATATTCACTACTCTTGATCATTGGTTGTTACGAGTCCCTTGAGTTGTGGAGTCCAAGTGAGAGCAATAAAACTATGACTGTTCCAGCGCACAAGGGGCTAGTTGCTGCACTGGCGTCATCCCCAAAGACTGATATGGTTGCCTCAGGGAGCCATGATCAGGTCGTCAAACTATGGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

646

Amino Acids

72.35

Weight (kDa)

7.99

Isoelectric Point (pI)

51.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_CAF1B_HIR1 PF24105 349 - 489 6e-11 CAF1B/HIR1 beta-propeller domain
WD40_MABP1-WDR62_2nd PF24782 354 - 557 3.5e-14 MABP1/WDR62 second WD40 domain
EIF3I PF24805 354 - 437 2.7e-07 EIF3I
Beta-prop_THOC3 PF25174 355 - 423 1.2e-08 THOC3 beta-propeller domain
Beta-prop_WDR3_1st PF25173 356 - 496 2.3e-22 WDR3 first beta-propeller domain
WDR55 PF24796 356 - 486 9.7e-09 WDR55
WD40_CDC20-Fz PF24807 358 - 486 2.3e-14 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_2nd PF25172 359 - 480 8.4e-16 WDR3 second beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 361 - 460 5.6e-09 WDR36/Utp21 second beta-propeller domain
WD40_Prp19 PF24814 362 - 495 3.5e-19 Prp19 WD40 domain
Beta-prop_WDR5 PF25175 363 - 496 1.5e-29 WDR5 beta-propeller domain
WD40_WDHD1_1st PF24817 363 - 439 3e-11 WDHD1 first WD40 domain
Beta-prop_EML_2 PF23414 365 - 484 1.8e-15 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_Aladin PF25460 368 - 562 7.6e-09 Aladin seven-bladed propeller
Beta-prop_IFT122_1st PF23381 373 - 548 1.5e-06 IFT122 first beta-propeller
Beta-prop_EML PF23409 385 - 487 4.3e-06 Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_TEP1_2nd PF25047 396 - 494 1.5e-06 TEP-1 second beta-propeller
WD40 PF00400 399 - 435 8.8e-08 WD domain, G-beta repeat
WD40_Gbeta PF25391 402 - 554 1.4e-06 G protein beta WD-40 repeat protein
Beta-prop_THOC3 PF25174 406 - 496 6.3e-16 THOC3 beta-propeller domain
WD40_WDHD1_1st PF24817 410 - 589 2.6e-19 WDHD1 first WD40 domain
WD40_CDC20-Fz PF24807 443 - 594 8.7e-13 CDC20/Fizzy WD40 domain
WD40_Prp19 PF24814 470 - 645 7.2e-17 Prp19 WD40 domain
Beta-prop_WDR3_1st PF25173 473 - 646 2.4e-18 WDR3 first beta-propeller domain
Beta-prop_EML_2 PF23414 491 - 569 3.5e-06 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR5 PF25175 492 - 645 2e-21 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 494 - 645 7.5e-17 THOC3 beta-propeller domain
Beta-prop_WDR36-Utp21_1st PF25171 504 - 642 7.7e-06 WDR36/Utp21 first beta-propeller
Beta-prop_WDR3_2nd PF25172 536 - 646 2.9e-10 WDR3 second beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 644
AccB7I CCANNNNNTGG 2 cut(s) 638, 686
AciI CCGC 3 cut(s) 449, 663, 1695
AclI AACGTT 1 cut(s) 1262
AclWI GGATC 1 cut(s) 1597
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 4 cut(s) 105, 1071, 1252, 1733
AcuI CTGAAG 3 cut(s) 330, 559, 1512
AcyI GRCGYC 1 cut(s) 1874
AfaI GTAC 2 cut(s) 997, 1239
AfiI CCNNNNNNNGG 5 cut(s) 165, 638, 686, 1505, 1918
AgeI ACCGGT 1 cut(s) 256
AjnI CCWGG 4 cut(s) 380, 418, 673, 1756
AjuI GAANNNNNNNTTGG 2 cut(s) 152, 184
AluBI AGCT 6 cut(s) 122, 573, 644, 716, 1142, 1336
AluI AGCT 6 cut(s) 122, 573, 644, 716, 1142, 1336
Alw21I GWGCWC 3 cut(s) 646, 1457, 1672
Alw26I GTCTC 5 cut(s) 366, 743, 805, 891, 1553
Alw44I GTGCAC 2 cut(s) 1453, 1668
AlwI GGATC 1 cut(s) 1597
AoxI GGCC 4 cut(s) 3, 16, 240, 692
ApaLI GTGCAC 2 cut(s) 1453, 1668
ApoI RAATTY 4 cut(s) 105, 1071, 1252, 1733
AsiGI ACCGGT 1 cut(s) 256
AspA2I CCTAGG 1 cut(s) 374
AspLEI GCGC 2 cut(s) 713, 1849
AspS9I GGNCC 4 cut(s) 16, 378, 434, 677
AsuHPI GGTGA 2 cut(s) 88, 1367
AsuII TTCGAA 3 cut(s) 1065, 1209, 1583
AvaII GGWCC 3 cut(s) 378, 434, 677
AvrII CCTAGG 1 cut(s) 374
AxyI CCTNAGG 1 cut(s) 1903
BaeGI GKGCMC 3 cut(s) 1347, 1457, 1672
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 2 cut(s) 646, 828
BbsI GAAGAC 1 cut(s) 1668
Bbv12I GWGCWC 3 cut(s) 646, 1457, 1672
BccI CCATC 1 cut(s) 787
BceAI ACGGC 1 cut(s) 3
BcgI CGANNNNNNTGC 4 cut(s) 434, 468, 1257, 1291
BciT130I CCWGG 4 cut(s) 382, 420, 675, 1758
BciVI GTATCC 2 cut(s) 408, 1621
BclI TGATCA 4 cut(s) 787, 841, 1776, 1915
BcoDI GTCTC 5 cut(s) 366, 743, 805, 891, 1553
BfaI CTAG 5 cut(s) 213, 375, 857, 1143, 1859
BfuAI ACCTGC 1 cut(s) 644
BfuI GTATCC 2 cut(s) 408, 1621
BlnI CCTAGG 1 cut(s) 374
Bme1390I CCNGG 4 cut(s) 382, 420, 675, 1758
Bme18I GGWCC 3 cut(s) 378, 434, 677
BmgT120I GGNCC 4 cut(s) 16, 378, 434, 677
BmiI GGNNCC 3 cut(s) 436, 726, 1910
BmrFI CCNGG 4 cut(s) 382, 420, 675, 1758
BpiI GAAGAC 1 cut(s) 1668
BpmI CTGGAG 1 cut(s) 660
Bpu10I CCTNAGC 2 cut(s) 645, 1098
Bpu14I TTCGAA 3 cut(s) 1065, 1209, 1583
BpuEI CTTGAG 3 cut(s) 506, 829, 1820
BsaBI GATNNNNATC 1 cut(s) 57
BsaHI GRCGYC 1 cut(s) 1874
BsaI GGTCTC 1 cut(s) 366
BsaJI CCNNGG 4 cut(s) 159, 243, 374, 1379
BsaWI WCCGGW 1 cut(s) 256
BsaXI ACNNNNNCTCC 4 cut(s) 988, 1018, 1801, 1831
Bsc4I CCNNNNNNNGG 5 cut(s) 165, 638, 686, 1505, 1918
Bse118I RCCGGY 1 cut(s) 256
Bse1I ACTGG 4 cut(s) 492, 643, 1566, 1875
Bse21I CCTNAGG 1 cut(s) 1903
Bse8I GATNNNNATC 1 cut(s) 57
BseBI CCWGG 4 cut(s) 382, 420, 675, 1758
BseDI CCNNGG 4 cut(s) 159, 243, 374, 1379
BseJI GATNNNNATC 1 cut(s) 57
BseLI CCNNNNNNNGG 5 cut(s) 165, 638, 686, 1505, 1918
BseMII CTCAG 2 cut(s) 659, 1917
BseNI ACTGG 4 cut(s) 492, 643, 1566, 1875
BseRI GAGGAG 2 cut(s) 509, 889
BseSI GKGCMC 3 cut(s) 1347, 1457, 1672
BseYI CCCAGC 2 cut(s) 828, 1623
BsgI GTGCAG 5 cut(s) 47, 318, 569, 1167, 1851
BshFI GGCC 4 cut(s) 5, 18, 242, 694
BshTI ACCGGT 1 cut(s) 256
BsiHKAI GWGCWC 3 cut(s) 646, 1457, 1672
BsiSI CCGG 1 cut(s) 257
BslFI GGGAC 3 cut(s) 920, 1144, 1780
BslI CCNNNNNNNGG 5 cut(s) 165, 638, 686, 1505, 1918
BsmAI GTCTC 5 cut(s) 366, 743, 805, 891, 1553
BsmFI GGGAC 3 cut(s) 920, 1144, 1780
BsmI GAATGC 1 cut(s) 1216
BsnI GGCC 4 cut(s) 5, 18, 242, 694
Bso31I GGTCTC 1 cut(s) 366
Bsp119I TTCGAA 3 cut(s) 1065, 1209, 1583
Bsp1286I GDGCHC 5 cut(s) 646, 828, 1347, 1457, 1672
Bsp143I GATC 8 cut(s) 52, 235, 463, 787, 841, 1589, 1776, 1915
BspACI CCGC 3 cut(s) 449, 663, 1695
BspANI GGCC 4 cut(s) 5, 18, 242, 694
BspCNI CTCAG 2 cut(s) 658, 1916
BspLI GGNNCC 3 cut(s) 436, 726, 1910
BspMI ACCTGC 1 cut(s) 644
BspPI GGATC 1 cut(s) 1597
BspQI GCTCTTC 1 cut(s) 1206
BspT104I TTCGAA 3 cut(s) 1065, 1209, 1583
BspTNI GGTCTC 1 cut(s) 366
BsrFI RCCGGY 1 cut(s) 256
BsrI ACTGG 4 cut(s) 492, 643, 1566, 1875
BssAI RCCGGY 1 cut(s) 256
BssECI CCNNGG 4 cut(s) 159, 243, 374, 1379
BssMI GATC 8 cut(s) 52, 235, 463, 787, 841, 1589, 1776, 1915
BssNI GRCGYC 1 cut(s) 1874
BssT1I CCWWGG 4 cut(s) 159, 243, 374, 1379
Bst2UI CCWGG 4 cut(s) 382, 420, 675, 1758
Bst4CI ACNGT 6 cut(s) 902, 983, 1242, 1431, 1667, 1840
Bst6I CTCTTC 1 cut(s) 1206
BstACI GRCGYC 1 cut(s) 1874
BstAPI GCANNNNNTGC 1 cut(s) 547
BstBI TTCGAA 3 cut(s) 1065, 1209, 1583
BstC8I GCNNGC 1 cut(s) 723
BstDEI CTNAG 5 cut(s) 600, 645, 1098, 1449, 1903
BstHHI GCGC 2 cut(s) 713, 1849
BstKTI GATC 8 cut(s) 55, 238, 466, 790, 844, 1592, 1779, 1918
BstMAI GTCTC 5 cut(s) 366, 743, 805, 891, 1553
BstMBI GATC 8 cut(s) 52, 235, 463, 787, 841, 1589, 1776, 1915
BstNI CCWGG 4 cut(s) 382, 420, 675, 1758
BstNSI RCATGY 3 cut(s) 1358, 1465, 1601
BstSCI CCNGG 4 cut(s) 380, 418, 673, 1756
BstSLI GKGCMC 3 cut(s) 1347, 1457, 1672
BstV2I GAAGAC 1 cut(s) 1668
BstX2I RGATCY 1 cut(s) 1589
BstXI CCANNNNNNTGG 1 cut(s) 1724
BstYI RGATCY 1 cut(s) 1589
Bsu36I CCTNAGG 1 cut(s) 1903
BsuI GTATCC 2 cut(s) 408, 1621
BsuRI GGCC 4 cut(s) 5, 18, 242, 694
BtsI GCAGTG 1 cut(s) 96
BtsIMutI CAGTG 5 cut(s) 96, 988, 1371, 1672, 1868
BveI ACCTGC 1 cut(s) 644
Cac8I GCNNGC 1 cut(s) 723
CfoI GCGC 2 cut(s) 713, 1849
Cfr10I RCCGGY 1 cut(s) 256
Cfr13I GGNCC 4 cut(s) 16, 378, 434, 677
CseI GACGC 2 cut(s) 1013, 1863
CsiI ACCWGGT 1 cut(s) 418
Csp6I GTAC 2 cut(s) 996, 1238
CspAI ACCGGT 1 cut(s) 256
CviAII CATG 9 cut(s) 1093, 1154, 1180, 1355, 1404, 1462, 1598, 1743, 1913
CviQI GTAC 2 cut(s) 996, 1238
DdeI CTNAG 5 cut(s) 600, 645, 1098, 1449, 1903
DpnI GATC 8 cut(s) 54, 237, 465, 789, 843, 1591, 1778, 1917
DpnII GATC 8 cut(s) 52, 235, 463, 787, 841, 1589, 1776, 1915
DraI TTTAAA 1 cut(s) 699
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 1206
EarI CTCTTC 1 cut(s) 1206
Ecl136II GAGCTC 1 cut(s) 644
Eco130I CCWWGG 4 cut(s) 159, 243, 374, 1379
Eco147I AGGCCT 1 cut(s) 694
Eco24I GRGCYC 2 cut(s) 646, 828
Eco31I GGTCTC 1 cut(s) 366
Eco47I GGWCC 3 cut(s) 378, 434, 677
Eco53kI GAGCTC 1 cut(s) 644
Eco57I CTGAAG 3 cut(s) 330, 559, 1512
Eco81I CCTNAGG 1 cut(s) 1903
EcoICRI GAGCTC 1 cut(s) 644
EcoRII CCWGG 4 cut(s) 380, 418, 673, 1756
EcoT14I CCWWGG 4 cut(s) 159, 243, 374, 1379
EcoT22I ATGCAT 1 cut(s) 1706
EcoT38I GRGCYC 2 cut(s) 646, 828
ErhI CCWWGG 4 cut(s) 159, 243, 374, 1379
FaeI CATG 9 cut(s) 1096, 1157, 1183, 1358, 1407, 1465, 1601, 1746, 1916
FalI AAGNNNNNCTT 4 cut(s) 700, 732, 1596, 1628
FaqI GGGAC 3 cut(s) 920, 1144, 1780
FatI CATG 9 cut(s) 1092, 1153, 1179, 1354, 1403, 1461, 1597, 1742, 1912
FbaI TGATCA 4 cut(s) 787, 841, 1776, 1915
FriOI GRGCYC 2 cut(s) 646, 828
FspBI CTAG 5 cut(s) 213, 375, 857, 1143, 1859
GlaI GCGC 2 cut(s) 712, 1848
GsaI CCCAGC 2 cut(s) 832, 1627
GsuI CTGGAG 1 cut(s) 660
HaeIII GGCC 4 cut(s) 5, 18, 242, 694
HapII CCGG 1 cut(s) 257
HgaI GACGC 2 cut(s) 1013, 1863
HhaI GCGC 2 cut(s) 713, 1849
Hin1I GRCGYC 1 cut(s) 1874
Hin1II CATG 9 cut(s) 1096, 1157, 1183, 1358, 1407, 1465, 1601, 1746, 1916
Hin6I GCGC 2 cut(s) 711, 1847
HinP1I GCGC 2 cut(s) 711, 1847
HincII GTYRAC 3 cut(s) 25, 1441, 1683
HindII GTYRAC 3 cut(s) 25, 1441, 1683
HindIII AAGCTT 1 cut(s) 1334
HinfI GANTC 5 cut(s) 956, 1322, 1491, 1793, 1810
HpaII CCGG 1 cut(s) 257
HphI GGTGA 2 cut(s) 88, 1367
Hpy166II GTNNAC 7 cut(s) 25, 186, 293, 1441, 1455, 1670, 1683
Hpy188I TCNGA 6 cut(s) 136, 468, 792, 1170, 1427, 1490
Hpy8I GTNNAC 7 cut(s) 25, 186, 293, 1441, 1455, 1670, 1683
Hpy99I CGWCG 2 cut(s) 369, 1029
HpyAV CCTTC 3 cut(s) 684, 1334, 1579
HpyCH4III ACNGT 6 cut(s) 902, 983, 1242, 1431, 1667, 1840
HpyCH4IV ACGT 3 cut(s) 289, 1133, 1262
HpyF3I CTNAG 5 cut(s) 600, 645, 1098, 1449, 1903
HpySE526I ACGT 3 cut(s) 289, 1133, 1262
Hsp92I GRCGYC 1 cut(s) 1874
Hsp92II CATG 9 cut(s) 1096, 1157, 1183, 1358, 1407, 1465, 1601, 1746, 1916
HspAI GCGC 2 cut(s) 711, 1847
Ksp22I TGATCA 4 cut(s) 787, 841, 1776, 1915
Kzo9I GATC 8 cut(s) 52, 235, 463, 787, 841, 1589, 1776, 1915
LguI GCTCTTC 1 cut(s) 1206
LmnI GCTCC 5 cut(s) 641, 730, 890, 1472, 1908
MabI ACCWGGT 1 cut(s) 418
MaeI CTAG 5 cut(s) 213, 375, 857, 1143, 1859
MaeII ACGT 3 cut(s) 289, 1133, 1262
MaeIII GTNAC 4 cut(s) 480, 852, 1412, 1787
MalI GATC 8 cut(s) 54, 237, 465, 789, 843, 1591, 1778, 1917
MboI GATC 8 cut(s) 52, 235, 463, 787, 841, 1589, 1776, 1915
MfeI CAATTG 1 cut(s) 221
MflI RGATCY 1 cut(s) 1589
MhlI GDGCHC 5 cut(s) 646, 828, 1347, 1457, 1672
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 965, 1802, 1819
MmeI TCCRAC 1 cut(s) 1450
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 1706
MscI TGGCCA 1 cut(s) 5
MseI TTAA 4 cut(s) 173, 698, 1200, 1467
MslI CAYNNNNRTG 2 cut(s) 1460, 1722
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 257
MspR9I CCNGG 4 cut(s) 382, 420, 675, 1758
MunI CAATTG 1 cut(s) 221
Mva1269I GAATGC 1 cut(s) 1216
MvaI CCWGG 4 cut(s) 382, 420, 675, 1758
NdeII GATC 8 cut(s) 52, 235, 463, 787, 841, 1589, 1776, 1915
NlaIII CATG 9 cut(s) 1096, 1157, 1183, 1358, 1407, 1465, 1601, 1746, 1916
NlaIV GGNNCC 3 cut(s) 436, 726, 1910
NmuCI GTSAC 1 cut(s) 480
NsiI ATGCAT 1 cut(s) 1706
NspI RCATGY 3 cut(s) 1358, 1465, 1601
NspV TTCGAA 3 cut(s) 1065, 1209, 1583
PceI AGGCCT 1 cut(s) 694
PciSI GCTCTTC 1 cut(s) 1206
PctI GAATGC 1 cut(s) 1216
PfeI GAWTC 2 cut(s) 1322, 1491
PflMI CCANNNNNTGG 2 cut(s) 638, 686
PfoI TCCNGGA 1 cut(s) 1756
PinAI ACCGGT 1 cut(s) 256
PleI GAGTC 3 cut(s) 964, 1801, 1818
PpsI GAGTC 3 cut(s) 964, 1801, 1818
Psp124BI GAGCTC 1 cut(s) 646
Psp1406I AACGTT 1 cut(s) 1262
Psp6I CCWGG 4 cut(s) 380, 418, 673, 1756
PspFI CCCAGC 2 cut(s) 828, 1623
PspGI CCWGG 4 cut(s) 380, 418, 673, 1756
PspN4I GGNNCC 3 cut(s) 436, 726, 1910
PspPI GGNCC 4 cut(s) 16, 378, 434, 677
PsuI RGATCY 1 cut(s) 1589
RsaI GTAC 2 cut(s) 997, 1239
RsaNI GTAC 2 cut(s) 996, 1238
RseI CAYNNNNRTG 2 cut(s) 1460, 1722
SacI GAGCTC 1 cut(s) 646
SapI GCTCTTC 1 cut(s) 1206
SaqAI TTAA 4 cut(s) 173, 698, 1200, 1467
Sau3AI GATC 8 cut(s) 52, 235, 463, 787, 841, 1589, 1776, 1915
Sau96I GGNCC 4 cut(s) 16, 378, 434, 677
SchI GAGTC 3 cut(s) 965, 1802, 1819
ScrFI CCNGG 4 cut(s) 382, 420, 675, 1758
SduI GDGCHC 5 cut(s) 646, 828, 1347, 1457, 1672
SexAI ACCWGGT 1 cut(s) 418
SfuI TTCGAA 3 cut(s) 1065, 1209, 1583
SinI GGWCC 3 cut(s) 378, 434, 677
SmiMI CAYNNNNRTG 2 cut(s) 1460, 1722
SmlI CTYRAG 3 cut(s) 521, 808, 1799
SmoI CTYRAG 3 cut(s) 521, 808, 1799
SseBI AGGCCT 1 cut(s) 694
SsiI CCGC 3 cut(s) 449, 663, 1695
SspI AATATT 2 cut(s) 529, 1514
SspMI CTAG 5 cut(s) 213, 375, 857, 1143, 1859
SstI GAGCTC 1 cut(s) 646
StuI AGGCCT 1 cut(s) 694
StyD4I CCNGG 4 cut(s) 380, 418, 673, 1756
StyI CCWWGG 4 cut(s) 159, 243, 374, 1379
TaaI ACNGT 6 cut(s) 902, 983, 1242, 1431, 1667, 1840
TaiI ACGT 3 cut(s) 292, 1136, 1265
TaqI TCGA 6 cut(s) 364, 1065, 1209, 1501, 1572, 1583
TfiI GAWTC 2 cut(s) 1322, 1491
Tru1I TTAA 4 cut(s) 173, 698, 1200, 1467
Tru9I TTAA 4 cut(s) 173, 698, 1200, 1467
TscAI CASTG 5 cut(s) 103, 988, 1371, 1672, 1875
TseFI GTSAC 1 cut(s) 480
Tsp45I GTSAC 1 cut(s) 480
TspDTI ATGAA 8 cut(s) 192, 942, 1110, 1170, 1389, 1434, 1725, 1742
TspGWI ACGGA 1 cut(s) 1687
TspRI CASTG 5 cut(s) 103, 988, 1371, 1672, 1875
Van91I CCANNNNNTGG 2 cut(s) 638, 686
VneI GTGCAC 2 cut(s) 1453, 1668
VpaK11BI GGWCC 3 cut(s) 378, 434, 677
XapI RAATTY 4 cut(s) 105, 1071, 1252, 1733
XceI RCATGY 3 cut(s) 1358, 1465, 1601
XcmI CCANNNNNNNNNTGG 1 cut(s) 1502
XmaJI CCTAGG 1 cut(s) 374
XspI CTAG 5 cut(s) 213, 375, 857, 1143, 1859
Zsp2I ATGCAT 1 cut(s) 1706
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.