Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0013637

Physical Location & Seq

Genomic Coordinates Forward (+)

6273009 .. 6274145

Gene Structure 1137 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G116000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGCCTGGTTCTACTGAGTGGGGGCAATACTACCAACAAGCCTTCATGGATAATGGGCAGGCAACACCCACTAATGGAGGATTTTCAGATGCAACTATTGTCACAACAAGTACCACTTTAGTGACAGAGAGCAACGGCAGCCCCAGCAGTTCACATACAGGAGGAGGAGGTCAGCTAACTCCAACAAGAAGTGTATCCAAACCAATCAGAAGGAGGTCTAGAGTTTCAAAGAAGACACCGATCACTCTCCTCAATGCCAACGCCAACAACTTTCGAGCTTTGGTGCAACAATTCACAGGATGTGCTACTTCTAGCTCACCCATTTCCTTTGGGAACCAAAGGGGTCCTATCAACTTGAGTTTTGGATCCAACAATAACGTGACTAGTTCTGTTATGGCACCTTTTGGTAATCACAACTACAGCTACCAATATCAACAACAATTGCAGCGGGTGGTGCAGCCGCCACCGCAAGTGCAACAACACCAACAACGACGACAGCCGCTGCTGCAATTGCAAGAAAATCAACAAGTTCATCAAGTGCAACCGATTGACAATAATATTAGTGGTAGTCATGAATTGTTTCAATATTCATTGGGTGGTGGTGGTTATAATCCTATACCAAATCTGGAGACTCTGGATGAATTTTCCATGGATCAAGAAGATATAGCTTTGCATGACTTTTCTATTGATCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

232

Amino Acids

25.35

Weight (kDa)

6.28

Isoelectric Point (pI)

50.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013637)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g12720
prunus_persica	Prupe.4G116000_v2.0.a1
pyrus_communis	pycom10g19230
rosa_chinensis	RchiOBHm_Chr5g0020711
rosa_laevigata	RLG00000001170 RLG00000001264 RLG00000015227 RLG00000032555
rosa_multiflora	Rmu_sc0002527.1_g000001 Rmu_ssc0000162.1_g000028
rosa_roxburghii	Rroxscaffold_1G00057590
rosa_rugosa	Rorug05G0062600
rosa_samantha	Rh5AG152300 Rh5BG152000 Rh5CG163500 Rh5CG532100 Rh5DG151500
rosa_wichuraiana	Rw5G013500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	609
AccB1I	GGYRCC	1 cut(s)	397
AciI	CCGC	4 cut(s)	448, 461, 467, 500
AclWI	GGATC	3 cut(s)	360, 373, 660
AcsI	RAATTY	1 cut(s)	641
AfaI	GTAC	1 cut(s)	112
AfiI	CCNNNNNNNGG	1 cut(s)	74
AgsI	TTSAA	2 cut(s)	228, 584
AhlI	ACTAGT	1 cut(s)	383
AjnI	CCWGG	1 cut(s)	4
AleI	CACNNNNGTG	1 cut(s)	119
AluBI	AGCT	5 cut(s)	175, 278, 315, 423, 668
AluI	AGCT	5 cut(s)	175, 278, 315, 423, 668
Alw26I	GTCTC	1 cut(s)	623
AlwI	GGATC	3 cut(s)	360, 373, 660
AlwNI	CAGNNNCTG	1 cut(s)	502
ApeKI	GCWGC	5 cut(s)	138, 445, 457, 502, 505
ApoI	RAATTY	1 cut(s)	641
Asp700I	GAANNNNTTC	1 cut(s)	579
AspS9I	GGNCC	1 cut(s)	344
AsuHPI	GGTGA	1 cut(s)	309
AvaII	GGWCC	1 cut(s)	344
BamHI	GGATCC	1 cut(s)	365
BanI	GGYRCC	1 cut(s)	397
BbsI	GAAGAC	1 cut(s)	239
BbvI	GCAGC	5 cut(s)	150, 457, 469, 489, 492
BceAI	ACGGC	1 cut(s)	151
BciT130I	CCWGG	1 cut(s)	6
BciVI	GTATCC	1 cut(s)	205
BcoDI	GTCTC	1 cut(s)	623
BcuI	ACTAGT	1 cut(s)	383
BfaI	CTAG	4 cut(s)	219, 312, 384, 694
BfmI	CTRYAG	1 cut(s)	418
BfuI	GTATCC	1 cut(s)	205
BisI	GCNGC	7 cut(s)	139, 446, 458, 461, 500, 503, 506
BlsI	GCNGC	7 cut(s)	140, 447, 459, 462, 501, 504, 507
Bme1390I	CCNGG	1 cut(s)	6
Bme18I	GGWCC	1 cut(s)	344
BmgT120I	GGNCC	1 cut(s)	344
BmiI	GGNNCC	4 cut(s)	335, 345, 367, 399
BmrFI	CCNGG	1 cut(s)	6
BmsI	GCATC	1 cut(s)	79
BpiI	GAAGAC	1 cut(s)	239
BpmI	CTGGAG	1 cut(s)	647
BpuEI	CTTGAG	1 cut(s)	376
BsaJI	CCNNGG	1 cut(s)	648
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
BseBI	CCWGG	1 cut(s)	6
BseDI	CCNNGG	1 cut(s)	648
BseGI	GGATG	2 cut(s)	305, 643
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseMII	CTCAG	1 cut(s)	6
BseRI	GAGGAG	3 cut(s)	177, 180, 239
BseXI	GCAGC	5 cut(s)	150, 457, 469, 489, 492
BseYI	CCCAGC	1 cut(s)	143
BsgI	GTGCAG	1 cut(s)	476
BshNI	GGYRCC	1 cut(s)	397
BslI	CCNNNNNNNGG	1 cut(s)	74
BsmAI	GTCTC	1 cut(s)	623
Bsp143I	GATC	4 cut(s)	240, 365, 652, 688
Bsp19I	CCATGG	1 cut(s)	648
BspACI	CCGC	4 cut(s)	448, 461, 467, 500
BspCNI	CTCAG	1 cut(s)	7
BspHI	TCATGA	1 cut(s)	571
BspLI	GGNNCC	4 cut(s)	335, 345, 367, 399
BspPI	GGATC	3 cut(s)	360, 373, 660
BspT107I	GGYRCC	1 cut(s)	397
BssECI	CCNNGG	1 cut(s)	648
BssMI	GATC	4 cut(s)	240, 365, 652, 688
BssT1I	CCWWGG	1 cut(s)	648
Bst2UI	CCWGG	1 cut(s)	6
BstC8I	GCNNGC	1 cut(s)	60
BstDEI	CTNAG	1 cut(s)	15
BstDSI	CCRYGG	1 cut(s)	648
BstF5I	GGATG	2 cut(s)	305, 643
BstKTI	GATC	4 cut(s)	243, 368, 655, 691
BstMAI	GTCTC	1 cut(s)	623
BstMBI	GATC	4 cut(s)	240, 365, 652, 688
BstMWI	GCNNNNNNNGC	6 cut(s)	138, 144, 454, 466, 505, 511
BstNI	CCWGG	1 cut(s)	6
BstSCI	CCNGG	1 cut(s)	4
BstSFI	CTRYAG	1 cut(s)	418
BstV1I	GCAGC	5 cut(s)	150, 457, 469, 489, 492
BstV2I	GAAGAC	1 cut(s)	239
BstX2I	RGATCY	1 cut(s)	365
BstYI	RGATCY	1 cut(s)	365
BsuI	GTATCC	1 cut(s)	205
BtgI	CCRYGG	1 cut(s)	648
BtsCI	GGATG	2 cut(s)	305, 643
Cac8I	GCNNGC	1 cut(s)	60
CaiI	CAGNNNCTG	1 cut(s)	502
CciI	TCATGA	1 cut(s)	571
Cfr13I	GGNCC	1 cut(s)	344
Csp6I	GTAC	1 cut(s)	111
CviAII	CATG	4 cut(s)	46, 572, 649, 674
CviJI	RGCY	9 cut(s)	41, 141, 175, 278, 315, 423, 460, 499, 668
CviKI_1	RGCY	9 cut(s)	41, 141, 175, 278, 315, 423, 460, 499, 668
CviQI	GTAC	1 cut(s)	111
DdeI	CTNAG	1 cut(s)	15
DpnI	GATC	4 cut(s)	242, 367, 654, 690
DpnII	GATC	4 cut(s)	240, 365, 652, 688
Eco130I	CCWWGG	1 cut(s)	648
Eco47I	GGWCC	1 cut(s)	344
EcoO109I	RGGNCCY	1 cut(s)	344
EcoRII	CCWGG	1 cut(s)	4
EcoT14I	CCWWGG	1 cut(s)	648
ErhI	CCWWGG	1 cut(s)	648
FaeI	CATG	4 cut(s)	49, 575, 652, 677
FaiI	YATR	9 cut(s)	47, 156, 395, 573, 609, 617, 650, 665, 675
FalI	AAGNNNNNCTT	2 cut(s)	100, 132
FatI	CATG	4 cut(s)	45, 571, 648, 673
FauI	CCCGC	1 cut(s)	441
Fnu4HI	GCNGC	7 cut(s)	139, 446, 458, 461, 500, 503, 506
FokI	GGATG	2 cut(s)	312, 650
Fsp4HI	GCNGC	7 cut(s)	139, 446, 458, 461, 500, 503, 506
FspBI	CTAG	4 cut(s)	219, 312, 384, 694
GluI	GCNGC	7 cut(s)	139, 446, 458, 461, 500, 503, 506
GsaI	CCCAGC	1 cut(s)	147
GsuI	CTGGAG	1 cut(s)	647
Hin1II	CATG	4 cut(s)	49, 575, 652, 677
HinfI	GANTC	1 cut(s)	631
HphI	GGTGA	1 cut(s)	309
Hpy166II	GTNNAC	1 cut(s)	152
Hpy188I	TCNGA	2 cut(s)	88, 209
Hpy188III	TCNNGA	5 cut(s)	219, 572, 626, 635, 656
Hpy8I	GTNNAC	1 cut(s)	152
Hpy99I	CGWCG	1 cut(s)	495
HpyAV	CCTTC	2 cut(s)	52, 204
HpyCH4IV	ACGT	1 cut(s)	378
HpyCH4V	TGCA	9 cut(s)	92, 286, 445, 457, 475, 508, 514, 541, 673
HpyF10VI	GCNNNNNNNGC	6 cut(s)	138, 144, 454, 466, 505, 511
HpyF3I	CTNAG	1 cut(s)	15
HpySE526I	ACGT	1 cut(s)	378
Hsp92II	CATG	4 cut(s)	49, 575, 652, 677
Kzo9I	GATC	4 cut(s)	240, 365, 652, 688
LpnPI	CCDG	7 cut(s)	18, 44, 144, 157, 282, 611, 620
Lsp1109I	GCAGC	5 cut(s)	150, 457, 469, 489, 492
LweI	GCATC	1 cut(s)	79
MaeI	CTAG	4 cut(s)	219, 312, 384, 694
MaeII	ACGT	1 cut(s)	378
MaeIII	GTNAC	3 cut(s)	100, 121, 379
MalI	GATC	4 cut(s)	242, 367, 654, 690
MboI	GATC	4 cut(s)	240, 365, 652, 688
MboII	GAAGA	2 cut(s)	244, 671
MfeI	CAATTG	2 cut(s)	440, 509
MflI	RGATCY	1 cut(s)	365
MluCI	AATT	5 cut(s)	290, 440, 509, 575, 641
MlyI	GAGTC	1 cut(s)	625
MmeI	TCCRAC	2 cut(s)	206, 393
MnlI	CCTC	6 cut(s)	71, 155, 158, 161, 207, 260
MroXI	GAANNNNTTC	1 cut(s)	579
MslI	CAYNNNNRTG	1 cut(s)	119
MspA1I	CMGCKG	2 cut(s)	448, 502
MspR9I	CCNGG	1 cut(s)	6
MunI	CAATTG	2 cut(s)	440, 509
MvaI	CCWGG	1 cut(s)	6
MwoI	GCNNNNNNNGC	6 cut(s)	138, 144, 454, 466, 505, 511
NcoI	CCATGG	1 cut(s)	648
NdeII	GATC	4 cut(s)	240, 365, 652, 688
NlaIII	CATG	4 cut(s)	49, 575, 652, 677
NlaIV	GGNNCC	4 cut(s)	335, 345, 367, 399
NmuCI	GTSAC	3 cut(s)	100, 121, 379
OliI	CACNNNNGTG	1 cut(s)	119
PagI	TCATGA	1 cut(s)	571
PdmI	GAANNNNTTC	1 cut(s)	579
PkrI	GCNGC	7 cut(s)	140, 447, 459, 462, 501, 504, 507
PleI	GAGTC	1 cut(s)	625
PpsI	GAGTC	1 cut(s)	625
PpuMI	RGGWCCY	1 cut(s)	344
PsiI	TTATAA	1 cut(s)	609
Psp5II	RGGWCCY	1 cut(s)	344
Psp6I	CCWGG	1 cut(s)	4
PspFI	CCCAGC	1 cut(s)	143
PspGI	CCWGG	1 cut(s)	4
PspN4I	GGNNCC	4 cut(s)	335, 345, 367, 399
PspPI	GGNCC	1 cut(s)	344
PspPPI	RGGWCCY	1 cut(s)	344
PstNI	CAGNNNCTG	1 cut(s)	502
PsuI	RGATCY	1 cut(s)	365
RsaI	GTAC	1 cut(s)	112
RsaNI	GTAC	1 cut(s)	111
RseI	CAYNNNNRTG	1 cut(s)	119
SatI	GCNGC	7 cut(s)	139, 446, 458, 461, 500, 503, 506
Sau3AI	GATC	4 cut(s)	240, 365, 652, 688
Sau96I	GGNCC	1 cut(s)	344
SchI	GAGTC	1 cut(s)	625
ScrFI	CCNGG	1 cut(s)	6
SetI	ASST	9 cut(s)	172, 177, 218, 280, 317, 381, 403, 425, 670
SfaNI	GCATC	1 cut(s)	79
SfcI	CTRYAG	1 cut(s)	418
SinI	GGWCC	1 cut(s)	344
SmiMI	CAYNNNNRTG	1 cut(s)	119
SmlI	CTYRAG	1 cut(s)	355
SmoI	CTYRAG	1 cut(s)	355
SpeI	ACTAGT	1 cut(s)	383
Sse9I	AATT	5 cut(s)	290, 440, 509, 575, 641
SsiI	CCGC	4 cut(s)	448, 461, 467, 500
SspI	AATATT	2 cut(s)	559, 587
SspMI	CTAG	4 cut(s)	219, 312, 384, 694
StyD4I	CCNGG	1 cut(s)	4
StyI	CCWWGG	1 cut(s)	648
TaiI	ACGT	1 cut(s)	381
TaqI	TCGA	1 cut(s)	274
TasI	AATT	5 cut(s)	290, 440, 509, 575, 641
TauI	GCSGC	2 cut(s)	463, 502
TseFI	GTSAC	3 cut(s)	100, 121, 379
TseI	GCWGC	5 cut(s)	138, 445, 457, 502, 505
Tsp45I	GTSAC	3 cut(s)	100, 121, 379
TspDTI	ATGAA	5 cut(s)	34, 521, 579, 588, 654
VpaK11BI	GGWCC	1 cut(s)	344
XapI	RAATTY	1 cut(s)	641
XbaI	TCTAGA	1 cut(s)	218
XmnI	GAANNNNTTC	1 cut(s)	579
XspI	CTAG	4 cut(s)	219, 312, 384, 694

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.