Rh5BG152000

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0013637
Physical Location & Seq
Forward (+)
15545858 .. 15547472
1615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG152000.1

Sequence Viewer

Length: 798 bp
ATGGAGATAGAATATCAAGCTTTCATATACATCACCTTCCTTACAGTTCACAACAAAAAGAGACCATTGAAATTAATTAGCATTATGGTGCCTGGTTCTAAGGAGTGGGAGCAATACTACCAGAAAGGCTTCACTGCAACTCCCATGAATGGAGGAGGGATCATTTCATCAGATTCAACTGGTGTGACAACAAGTAGTATTGCTGTTGTGACTGATCAGAGCTTCATCAGTACCAGCCCCAATAATGGAGGTCAGCTAACTCCTACCGGAAGTGTAGCGAAACCAATCCGGCGGAGGTCTAGGGTTTCCAAGAAGACCCCCATCACTCTCCTTAACGCCAACGCCAACAACTTTCGAGCTTTGGTTCAACAATTCACAGGTTGTGCCGCTTCTAGCACGCCCATTTCGTTCGGTAACCAAAAGGGTCCGATCAATCTGAGTTTCGGAGTCAATAGTGCAGGTACTAGTTCTGTAGTTATGGCGCCTTTTGGAAATCCCAACTATAGTTACAACCAGCAGCAGCAGCAACAATTGCAGCGGCTAGCGCAAGCGCAGCAAGAACAGCAACAACAACGACACCCGCTACTGCAACTGCAAGAAAACCATGTCCAACTGCATCAAGAAGAGCAACAGCGTATGTACCCGTTTGAAAATGTTAATGGTAGTGATCATGTGTTTCATTATTCGTCGAATTCGAGTAGTCCTGGTTATAATCCTATGCAAGCTGGTATGGAGATCGGGGATGGGTTTGAGGTCATGGATCAGGAAGATATATCTTTACATGAATTGCTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

265

Amino Acids

29.36

Weight (kDa)

6.38

Isoelectric Point (pI)

52.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 109 - 130 2.9e-07 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 711
Acc36I ACCTGC 1 cut(s) 449
AccB1I GGYRCC 2 cut(s) 88, 481
AciI CCGC 4 cut(s) 292, 387, 538, 581
AclWI GGATC 2 cut(s) 167, 768
AcsI RAATTY 1 cut(s) 691
AcyI GRCGYC 1 cut(s) 482
AfaI GTAC 3 cut(s) 232, 463, 641
AfiI CCNNNNNNNGG 2 cut(s) 149, 245
AgsI TTSAA 4 cut(s) 70, 177, 368, 650
AhlI ACTAGT 1 cut(s) 464
AjnI CCWGG 2 cut(s) 91, 703
AluBI AGCT 5 cut(s) 20, 222, 256, 359, 725
AluI AGCT 5 cut(s) 20, 222, 256, 359, 725
Alw26I GTCTC 1 cut(s) 55
AlwI GGATC 2 cut(s) 167, 768
ApeKI GCWGC 5 cut(s) 517, 520, 523, 535, 553
ApoI RAATTY 1 cut(s) 691
AseI ATTAAT 1 cut(s) 74
Asp700I GAANNNNTTC 1 cut(s) 128
AspLEI GCGC 3 cut(s) 484, 547, 553
AspS9I GGNCC 1 cut(s) 425
AsuHPI GGTGA 1 cut(s) 25
AsuNHI GCTAGC 1 cut(s) 541
AvaII GGWCC 1 cut(s) 425
BanI GGYRCC 2 cut(s) 88, 481
BbsI GAAGAC 1 cut(s) 320
BbvI GCAGC 5 cut(s) 529, 532, 535, 547, 565
BccI CCATC 2 cut(s) 329, 737
BciT130I CCWGG 2 cut(s) 93, 705
BclI TGATCA 2 cut(s) 214, 667
BcoDI GTCTC 1 cut(s) 55
BcuI ACTAGT 1 cut(s) 464
BfaI CTAG 4 cut(s) 300, 393, 465, 542
BfmI CTRYAG 2 cut(s) 471, 502
BfoI RGCGCY 1 cut(s) 485
BfuAI ACCTGC 1 cut(s) 449
BisI GCNGC 7 cut(s) 387, 518, 521, 524, 536, 539, 554
BlsI GCNGC 7 cut(s) 388, 519, 522, 525, 537, 540, 555
Bme1390I CCNGG 2 cut(s) 93, 705
Bme18I GGWCC 1 cut(s) 425
BmgT120I GGNCC 1 cut(s) 425
BmiI GGNNCC 3 cut(s) 90, 426, 483
BmrFI CCNGG 2 cut(s) 93, 705
BmsI GCATC 1 cut(s) 625
BmtI GCTAGC 1 cut(s) 545
BpiI GAAGAC 1 cut(s) 320
BsaHI GRCGYC 1 cut(s) 482
BsaI GGTCTC 1 cut(s) 55
BsaWI WCCGGW 1 cut(s) 266
BsaXI ACNNNNNCTCC 2 cut(s) 124, 154
Bsc4I CCNNNNNNNGG 2 cut(s) 149, 245
Bse1I ACTGG 1 cut(s) 184
BseBI CCWGG 2 cut(s) 93, 705
BseGI GGATG 1 cut(s) 748
BseLI CCNNNNNNNGG 2 cut(s) 149, 245
BseMII CTCAG 1 cut(s) 428
BseNI ACTGG 1 cut(s) 184
BseRI GAGGAG 1 cut(s) 168
BseXI GCAGC 5 cut(s) 529, 532, 535, 547, 565
BsgI GTGCAG 1 cut(s) 477
BshNI GGYRCC 2 cut(s) 88, 481
BsiSI CCGG 2 cut(s) 267, 289
BslI CCNNNNNNNGG 2 cut(s) 149, 245
BsmAI GTCTC 1 cut(s) 55
Bso31I GGTCTC 1 cut(s) 55
Bsp143I GATC 6 cut(s) 159, 214, 429, 667, 735, 760
BspACI CCGC 4 cut(s) 292, 387, 538, 581
BspCNI CTCAG 1 cut(s) 429
BspLI GGNNCC 3 cut(s) 90, 426, 483
BspMI ACCTGC 1 cut(s) 449
BspOI GCTAGC 1 cut(s) 545
BspPI GGATC 2 cut(s) 167, 768
BspQI GCTCTTC 1 cut(s) 618
BspT107I GGYRCC 2 cut(s) 88, 481
BspTNI GGTCTC 1 cut(s) 55
BsrI ACTGG 1 cut(s) 184
BssMI GATC 6 cut(s) 159, 214, 429, 667, 735, 760
BssNI GRCGYC 1 cut(s) 482
Bst2UI CCWGG 2 cut(s) 93, 705
Bst4CI ACNGT 1 cut(s) 46
Bst6I CTCTTC 1 cut(s) 618
BstACI GRCGYC 1 cut(s) 482
BstAPI GCANNNNNTGC 1 cut(s) 532
BstC8I GCNNGC 4 cut(s) 398, 543, 549, 723
BstDEI CTNAG 2 cut(s) 99, 437
BstEII GGTNACC 1 cut(s) 413
BstF5I GGATG 1 cut(s) 748
BstH2I RGCGCY 1 cut(s) 485
BstHHI GCGC 3 cut(s) 484, 547, 553
BstKTI GATC 6 cut(s) 162, 217, 432, 670, 738, 763
BstMAI GTCTC 1 cut(s) 55
BstMBI GATC 6 cut(s) 159, 214, 429, 667, 735, 760
BstMWI GCNNNNNNNGC 5 cut(s) 523, 532, 544, 553, 562
BstNI CCWGG 2 cut(s) 93, 705
BstPI GGTNACC 1 cut(s) 413
BstSCI CCNGG 2 cut(s) 91, 703
BstSFI CTRYAG 2 cut(s) 471, 502
BstV1I GCAGC 5 cut(s) 529, 532, 535, 547, 565
BstV2I GAAGAC 1 cut(s) 320
BtsCI GGATG 1 cut(s) 748
BtsI GCAGTG 1 cut(s) 132
BtsIMutI CAGTG 1 cut(s) 132
BveI ACCTGC 1 cut(s) 449
Cac8I GCNNGC 4 cut(s) 398, 543, 549, 723
CfoI GCGC 3 cut(s) 484, 547, 553
Cfr13I GGNCC 1 cut(s) 425
Csp6I GTAC 3 cut(s) 231, 462, 640
CviAII CATG 5 cut(s) 145, 605, 671, 757, 782
CviJI RGCY 8 cut(s) 20, 129, 222, 237, 256, 359, 541, 725
CviKI_1 RGCY 8 cut(s) 20, 129, 222, 237, 256, 359, 541, 725
CviQI GTAC 3 cut(s) 231, 462, 640
DdeI CTNAG 2 cut(s) 99, 437
DinI GGCGCC 1 cut(s) 483
DpnI GATC 6 cut(s) 161, 216, 431, 669, 737, 762
DpnII GATC 6 cut(s) 159, 214, 429, 667, 735, 760
Eam1104I CTCTTC 1 cut(s) 618
EarI CTCTTC 1 cut(s) 618
EciI GGCGGA 1 cut(s) 307
Eco31I GGTCTC 1 cut(s) 55
Eco47I GGWCC 1 cut(s) 425
Eco91I GGTNACC 1 cut(s) 413
EcoO65I GGTNACC 1 cut(s) 413
EcoRI GAATTC 1 cut(s) 691
EcoRII CCWGG 2 cut(s) 91, 703
EgeI GGCGCC 1 cut(s) 483
EheI GGCGCC 1 cut(s) 483
FaeI CATG 5 cut(s) 148, 608, 674, 760, 785
FatI CATG 5 cut(s) 144, 604, 670, 756, 781
FauI CCCGC 1 cut(s) 588
FbaI TGATCA 2 cut(s) 214, 667
Fnu4HI GCNGC 7 cut(s) 387, 518, 521, 524, 536, 539, 554
FokI GGATG 1 cut(s) 755
Fsp4HI GCNGC 7 cut(s) 387, 518, 521, 524, 536, 539, 554
FspBI CTAG 4 cut(s) 300, 393, 465, 542
GlaI GCGC 3 cut(s) 483, 546, 552
GluI GCNGC 7 cut(s) 387, 518, 521, 524, 536, 539, 554
HaeII RGCGCY 1 cut(s) 485
HapII CCGG 2 cut(s) 267, 289
HhaI GCGC 3 cut(s) 484, 547, 553
Hin1I GRCGYC 1 cut(s) 482
Hin1II CATG 5 cut(s) 148, 608, 674, 760, 785
Hin6I GCGC 3 cut(s) 482, 545, 551
HinP1I GCGC 3 cut(s) 482, 545, 551
HindIII AAGCTT 1 cut(s) 18
HinfI GANTC 2 cut(s) 173, 447
HpaII CCGG 2 cut(s) 267, 289
HphI GGTGA 1 cut(s) 25
Hpy166II GTNNAC 1 cut(s) 49
Hpy188I TCNGA 5 cut(s) 172, 219, 429, 438, 446
Hpy188III TCNNGA 2 cut(s) 620, 764
Hpy8I GTNNAC 1 cut(s) 49
Hpy99I CGWCG 1 cut(s) 691
HpyAV CCTTC 1 cut(s) 46
HpyCH4III ACNGT 1 cut(s) 46
HpyCH4V TGCA 7 cut(s) 137, 458, 535, 589, 595, 616, 721
HpyF10VI GCNNNNNNNGC 5 cut(s) 523, 532, 544, 553, 562
HpyF3I CTNAG 2 cut(s) 99, 437
Hsp92I GRCGYC 1 cut(s) 482
Hsp92II CATG 5 cut(s) 148, 608, 674, 760, 785
HspAI GCGC 3 cut(s) 482, 545, 551
KasI GGCGCC 1 cut(s) 481
Ksp22I TGATCA 2 cut(s) 214, 667
Kzo9I GATC 6 cut(s) 159, 214, 429, 667, 735, 760
LguI GCTCTTC 1 cut(s) 618
LmnI GCTCC 1 cut(s) 109
Lsp1109I GCAGC 5 cut(s) 529, 532, 535, 547, 565
LweI GCATC 1 cut(s) 625
MaeI CTAG 4 cut(s) 300, 393, 465, 542
MaeIII GTNAC 4 cut(s) 184, 208, 413, 506
MalI GATC 6 cut(s) 161, 216, 431, 669, 737, 762
MboI GATC 6 cut(s) 159, 214, 429, 667, 735, 760
MboII GAAGA 3 cut(s) 325, 635, 779
MfeI CAATTG 1 cut(s) 530
MluCI AATT 6 cut(s) 71, 75, 371, 530, 691, 785
Mly113I GGCGCC 1 cut(s) 482
MlyI GAGTC 1 cut(s) 456
MmeI TCCRAC 1 cut(s) 634
MnlI CCTC 5 cut(s) 146, 149, 242, 288, 745
MroXI GAANNNNTTC 1 cut(s) 128
MseI TTAA 4 cut(s) 74, 333, 657, 796
MslI CAYNNNNRTG 1 cut(s) 86
MspA1I CMGCKG 1 cut(s) 538
MspI CCGG 2 cut(s) 267, 289
MspR9I CCNGG 2 cut(s) 93, 705
MunI CAATTG 1 cut(s) 530
MvaI CCWGG 2 cut(s) 93, 705
MwoI GCNNNNNNNGC 5 cut(s) 523, 532, 544, 553, 562
NarI GGCGCC 1 cut(s) 482
NdeII GATC 6 cut(s) 159, 214, 429, 667, 735, 760
NheI GCTAGC 1 cut(s) 541
NlaIII CATG 5 cut(s) 148, 608, 674, 760, 785
NlaIV GGNNCC 3 cut(s) 90, 426, 483
NmuCI GTSAC 2 cut(s) 184, 208
PciSI GCTCTTC 1 cut(s) 618
PcsI WCGNNNNNNNCGW 2 cut(s) 404, 692
PdmI GAANNNNTTC 1 cut(s) 128
PfeI GAWTC 1 cut(s) 173
PkrI GCNGC 7 cut(s) 388, 519, 522, 525, 537, 540, 555
PleI GAGTC 1 cut(s) 455
PluTI GGCGCC 1 cut(s) 485
PpsI GAGTC 1 cut(s) 455
PshBI ATTAAT 1 cut(s) 74
PsiI TTATAA 1 cut(s) 711
Psp6I CCWGG 2 cut(s) 91, 703
PspEI GGTNACC 1 cut(s) 413
PspGI CCWGG 2 cut(s) 91, 703
PspN4I GGNNCC 3 cut(s) 90, 426, 483
PspPI GGNCC 1 cut(s) 425
RsaI GTAC 3 cut(s) 232, 463, 641
RsaNI GTAC 3 cut(s) 231, 462, 640
RseI CAYNNNNRTG 1 cut(s) 86
SapI GCTCTTC 1 cut(s) 618
SaqAI TTAA 4 cut(s) 74, 333, 657, 796
SatI GCNGC 7 cut(s) 387, 518, 521, 524, 536, 539, 554
Sau3AI GATC 6 cut(s) 159, 214, 429, 667, 735, 760
Sau96I GGNCC 1 cut(s) 425
SchI GAGTC 1 cut(s) 456
ScrFI CCNGG 2 cut(s) 93, 705
SfaNI GCATC 1 cut(s) 625
SfcI CTRYAG 2 cut(s) 471, 502
SfoI GGCGCC 1 cut(s) 483
SinI GGWCC 1 cut(s) 425
SmiMI CAYNNNNRTG 1 cut(s) 86
SpeI ACTAGT 1 cut(s) 464
Sse9I AATT 6 cut(s) 71, 75, 371, 530, 691, 785
SsiI CCGC 4 cut(s) 292, 387, 538, 581
SspDI GGCGCC 1 cut(s) 481
SspMI CTAG 4 cut(s) 300, 393, 465, 542
StyD4I CCNGG 2 cut(s) 91, 703
TaaI ACNGT 1 cut(s) 46
TaqI TCGA 3 cut(s) 355, 689, 695
TasI AATT 6 cut(s) 71, 75, 371, 530, 691, 785
TauI GCSGC 2 cut(s) 389, 541
TfiI GAWTC 1 cut(s) 173
Tru1I TTAA 4 cut(s) 74, 333, 657, 796
Tru9I TTAA 4 cut(s) 74, 333, 657, 796
TscAI CASTG 1 cut(s) 139
TseFI GTSAC 2 cut(s) 184, 208
TseI GCWGC 5 cut(s) 517, 520, 523, 535, 553
Tsp45I GTSAC 2 cut(s) 184, 208
TspDTI ATGAA 6 cut(s) 13, 156, 161, 214, 668, 798
TspRI CASTG 1 cut(s) 139
VpaK11BI GGWCC 1 cut(s) 425
VspI ATTAAT 1 cut(s) 74
XapI RAATTY 1 cut(s) 691
XmnI GAANNNNTTC 1 cut(s) 128
XspI CTAG 4 cut(s) 300, 393, 465, 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.