Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0013637

Physical Location & Seq

Genomic Coordinates Forward (+)

63362210 .. 63363193

Gene Structure 984 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015227

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGCAGGATGTGACCCAGCGACAAGATGCGACGGAGACCAAGATGATGATGGCAGCAGTCGGTGGTATGAAACAGTATGATAGGATCGACAATGCCCGGTTAAAGGACGAGTTAGACCGGGTTTGTGCACTTGCCGTCAAGTTCTTAGGCCACCCAATTCCATCTCTTGGTCCATCAATGGGGCTGCCACTGCCGAGTTCAGCTCTAGAACTCGGAGTTGGGAACAATGGGTTCGGTGGGATGAGCTCAGTGGGTACAACAATGCCATTGGGACCCGATTTCGGAGCGGGACTTGGGGGTGGCATGTCTATTGTGGCTCACACTAGGCCAGTGGTGGGAGGGCTCGACGAGAGGACTACGTCTTTGGAGCTAACTTTGGCGGCTATGGATGAGCTTGTGAAGGTGGCTCAGACTGATGAGCCACTTTGGCAAAGGAGCTTGGAAGGTGGGAGAGAGGTGCTGATGGCTTTTTTCTTATCCATATTTGCTGTTAGTTTGACAGCCATTGGGTTTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009628 GO:0009653 GO:0009664 GO:0009791 GO:0009827 GO:0009888 GO:0009889 GO:0009908 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0022622 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042335 GO:0042545 GO:0043473 GO:0043476 GO:0043478 GO:0043479 GO:0043480 GO:0043481 GO:0045229 GO:0045595 GO:0045596 GO:0048364 GO:0048367 GO:0048437 GO:0048468 GO:0048469 GO:0048497 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071554 GO:0071555 GO:0071669 GO:0071695 GO:0071840 GO:0080090 GO:0090558 GO:0090567 GO:0090627 GO:0090700 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

173

Amino Acids

18.12

Weight (kDa)

4.83

Isoelectric Point (pI)

36.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013637)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g12720
prunus_persica	Prupe.4G116000_v2.0.a1
pyrus_communis	pycom10g19230
rosa_chinensis	RchiOBHm_Chr5g0020711
rosa_laevigata	RLG00000001170 RLG00000001264 RLG00000015227 RLG00000032555
rosa_multiflora	Rmu_sc0002527.1_g000001 Rmu_ssc0000162.1_g000028
rosa_roxburghii	Rroxscaffold_1G00057590
rosa_rugosa	Rorug05G0062600
rosa_samantha	Rh5AG152300 Rh5BG152000 Rh5CG163500 Rh5CG532100 Rh5DG151500
rosa_wichuraiana	Rw5G013500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	167
AccBSI	CCGCTC	1 cut(s)	287
AciI	CCGC	2 cut(s)	287, 380
AclWI	GGATC	1 cut(s)	92
AfaI	GTAC	1 cut(s)	256
AfiI	CCNNNNNNNGG	5 cut(s)	103, 167, 179, 281, 335
AjuI	GAANNNNNNNTTGG	2 cut(s)	201, 233
AluBI	AGCT	5 cut(s)	203, 246, 370, 394, 438
AluI	AGCT	5 cut(s)	203, 246, 370, 394, 438
Alw21I	GWGCWC	2 cut(s)	130, 248
Alw26I	GTCTC	1 cut(s)	29
Alw44I	GTGCAC	1 cut(s)	126
AlwI	GGATC	1 cut(s)	92
AoxI	GGCC	2 cut(s)	148, 326
ApaLI	GTGCAC	1 cut(s)	126
ApeKI	GCWGC	2 cut(s)	53, 184
ArsI	GACNNNNNNTTYG	2 cut(s)	346, 378
AspS9I	GGNCC	2 cut(s)	170, 272
AsuC2I	CCSGG	2 cut(s)	97, 119
AvaII	GGWCC	2 cut(s)	170, 272
BaeGI	GKGCMC	1 cut(s)	130
BanII	GRGCYC	2 cut(s)	248, 345
Bbv12I	GWGCWC	2 cut(s)	130, 248
BbvI	GCAGC	2 cut(s)	65, 171
BccI	CCATC	4 cut(s)	43, 169, 181, 457
BceAI	ACGGC	1 cut(s)	119
BcnI	CCSGG	2 cut(s)	97, 119
BcoDI	GTCTC	1 cut(s)	29
BfaI	CTAG	2 cut(s)	206, 324
BglI	GCCNNNNNGGC	1 cut(s)	427
BisI	GCNGC	3 cut(s)	54, 185, 381
BlsI	GCNGC	3 cut(s)	55, 186, 382
Bme1390I	CCNGG	2 cut(s)	97, 119
Bme18I	GGWCC	2 cut(s)	170, 272
BmgT120I	GGNCC	2 cut(s)	170, 272
BmiI	GGNNCC	2 cut(s)	273, 274
BmrFI	CCNGG	2 cut(s)	97, 119
BmsI	GCATC	1 cut(s)	16
BplI	GAGNNNNNCTC	2 cut(s)	187, 219
BpuMI	CCSGG	2 cut(s)	97, 119
BsaI	GGTCTC	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	5 cut(s)	103, 167, 179, 281, 335
Bse1I	ACTGG	1 cut(s)	329
BseGI	GGATG	3 cut(s)	13, 246, 394
BseLI	CCNNNNNNNGG	5 cut(s)	103, 167, 179, 281, 335
BseMII	CTCAG	2 cut(s)	261, 422
BseNI	ACTGG	1 cut(s)	329
BseSI	GKGCMC	1 cut(s)	130
BseXI	GCAGC	2 cut(s)	65, 171
BseYI	CCCAGC	1 cut(s)	15
BshFI	GGCC	2 cut(s)	150, 328
BsiHKAI	GWGCWC	2 cut(s)	130, 248
BsiSI	CCGG	2 cut(s)	97, 118
BslFI	GGGAC	2 cut(s)	285, 303
BslI	CCNNNNNNNGG	5 cut(s)	103, 167, 179, 281, 335
BsmAI	GTCTC	1 cut(s)	29
BsmFI	GGGAC	2 cut(s)	285, 303
BsnI	GGCC	2 cut(s)	150, 328
Bso31I	GGTCTC	1 cut(s)	29
Bsp1286I	GDGCHC	3 cut(s)	130, 248, 345
Bsp143I	GATC	1 cut(s)	84
BspACI	CCGC	2 cut(s)	287, 380
BspANI	GGCC	2 cut(s)	150, 328
BspCNI	CTCAG	2 cut(s)	260, 421
BspLI	GGNNCC	2 cut(s)	273, 274
BspPI	GGATC	1 cut(s)	92
BspTNI	GGTCTC	1 cut(s)	29
BsrBI	CCGCTC	1 cut(s)	287
BsrI	ACTGG	1 cut(s)	329
BssMI	GATC	1 cut(s)	84
Bst4CI	ACNGT	1 cut(s)	75
BstDEI	CTNAG	3 cut(s)	145, 247, 408
BstF5I	GGATG	3 cut(s)	13, 246, 394
BstKTI	GATC	1 cut(s)	87
BstMAI	GTCTC	1 cut(s)	29
BstMBI	GATC	1 cut(s)	84
BstMWI	GCNNNNNNNGC	2 cut(s)	190, 427
BstNSI	RCATGY	1 cut(s)	307
BstSCI	CCNGG	2 cut(s)	95, 117
BstSLI	GKGCMC	1 cut(s)	130
BstV1I	GCAGC	2 cut(s)	65, 171
BsuRI	GGCC	2 cut(s)	150, 328
BtsCI	GGATG	3 cut(s)	13, 246, 394
BtsI	GCAGTG	1 cut(s)	188
BtsIMutI	CAGTG	3 cut(s)	188, 255, 336
Cfr13I	GGNCC	2 cut(s)	170, 272
Csp6I	GTAC	1 cut(s)	255
CviAII	CATG	1 cut(s)	304
CviQI	GTAC	1 cut(s)	255
DdeI	CTNAG	3 cut(s)	145, 247, 408
DpnI	GATC	1 cut(s)	86
DpnII	GATC	1 cut(s)	84
Ecl136II	GAGCTC	1 cut(s)	246
Eco24I	GRGCYC	2 cut(s)	248, 345
Eco31I	GGTCTC	1 cut(s)	29
Eco47I	GGWCC	2 cut(s)	170, 272
Eco53kI	GAGCTC	1 cut(s)	246
EcoICRI	GAGCTC	1 cut(s)	246
EcoO109I	RGGNCCY	1 cut(s)	272
EcoT38I	GRGCYC	2 cut(s)	248, 345
FaeI	CATG	1 cut(s)	307
FaiI	YATR	5 cut(s)	68, 78, 305, 386, 482
FaqI	GGGAC	2 cut(s)	285, 303
FatI	CATG	1 cut(s)	303
FauI	CCCGC	1 cut(s)	280
Fnu4HI	GCNGC	3 cut(s)	54, 185, 381
FokI	GGATG	3 cut(s)	20, 253, 401
FriOI	GRGCYC	2 cut(s)	248, 345
Fsp4HI	GCNGC	3 cut(s)	54, 185, 381
FspBI	CTAG	2 cut(s)	206, 324
GluI	GCNGC	3 cut(s)	54, 185, 381
GsaI	CCCAGC	1 cut(s)	19
HaeIII	GGCC	2 cut(s)	150, 328
HapII	CCGG	2 cut(s)	97, 118
Hin1II	CATG	1 cut(s)	307
HpaII	CCGG	2 cut(s)	97, 118
Hpy166II	GTNNAC	1 cut(s)	128
Hpy188I	TCNGA	3 cut(s)	215, 284, 411
Hpy188III	TCNNGA	1 cut(s)	206
Hpy8I	GTNNAC	1 cut(s)	128
Hpy99I	CGWCG	2 cut(s)	34, 350
HpyAV	CCTTC	2 cut(s)	394, 437
HpyCH4III	ACNGT	1 cut(s)	75
HpyCH4IV	ACGT	1 cut(s)	359
HpyCH4V	TGCA	2 cut(s)	4, 128
HpyF10VI	GCNNNNNNNGC	2 cut(s)	190, 427
HpyF3I	CTNAG	3 cut(s)	145, 247, 408
HpySE526I	ACGT	1 cut(s)	359
Hsp92II	CATG	1 cut(s)	307
KflI	GGGWCCC	1 cut(s)	272
Kzo9I	GATC	1 cut(s)	84
LmnI	GCTCC	3 cut(s)	284, 367, 435
LpnPI	CCDG	4 cut(s)	29, 110, 131, 342
Lsp1109I	GCAGC	2 cut(s)	65, 171
LweI	GCATC	1 cut(s)	16
MaeI	CTAG	2 cut(s)	206, 324
MaeII	ACGT	1 cut(s)	359
MaeIII	GTNAC	1 cut(s)	10
MalI	GATC	1 cut(s)	86
MbiI	CCGCTC	1 cut(s)	287
MboI	GATC	1 cut(s)	84
MhlI	GDGCHC	3 cut(s)	130, 248, 345
MluCI	AATT	1 cut(s)	156
MnlI	CCTC	3 cut(s)	332, 345, 448
MseI	TTAA	1 cut(s)	101
MspI	CCGG	2 cut(s)	97, 118
MspR9I	CCNGG	2 cut(s)	97, 119
MwoI	GCNNNNNNNGC	2 cut(s)	190, 427
NciI	CCSGG	2 cut(s)	97, 119
NdeII	GATC	1 cut(s)	84
NlaIII	CATG	1 cut(s)	307
NlaIV	GGNNCC	2 cut(s)	273, 274
NmeAIII	GCCGAG	1 cut(s)	219
NmuCI	GTSAC	1 cut(s)	10
NspI	RCATGY	1 cut(s)	307
PflFI	GACNNNGTC	1 cut(s)	358
PflMI	CCANNNNNTGG	1 cut(s)	167
PkrI	GCNGC	3 cut(s)	55, 186, 382
PpuMI	RGGWCCY	1 cut(s)	272
Psp124BI	GAGCTC	1 cut(s)	248
Psp5II	RGGWCCY	1 cut(s)	272
PspFI	CCCAGC	1 cut(s)	15
PspN4I	GGNNCC	2 cut(s)	273, 274
PspPI	GGNCC	2 cut(s)	170, 272
PspPPI	RGGWCCY	1 cut(s)	272
PsyI	GACNNNGTC	1 cut(s)	358
RsaI	GTAC	1 cut(s)	256
RsaNI	GTAC	1 cut(s)	255
SacI	GAGCTC	1 cut(s)	248
SaqAI	TTAA	1 cut(s)	101
SatI	GCNGC	3 cut(s)	54, 185, 381
Sau3AI	GATC	1 cut(s)	84
Sau96I	GGNCC	2 cut(s)	170, 272
ScrFI	CCNGG	2 cut(s)	97, 119
SduI	GDGCHC	3 cut(s)	130, 248, 345
SetI	ASST	9 cut(s)	205, 248, 362, 372, 396, 405, 440, 448, 459
SfaNI	GCATC	1 cut(s)	16
SinI	GGWCC	2 cut(s)	170, 272
Sse9I	AATT	1 cut(s)	156
SsiI	CCGC	2 cut(s)	287, 380
SspMI	CTAG	2 cut(s)	206, 324
SstI	GAGCTC	1 cut(s)	248
StyD4I	CCNGG	2 cut(s)	95, 117
TaaI	ACNGT	1 cut(s)	75
TaiI	ACGT	1 cut(s)	362
TaqI	TCGA	2 cut(s)	87, 345
TasI	AATT	1 cut(s)	156
TauI	GCSGC	1 cut(s)	383
Tru1I	TTAA	1 cut(s)	101
Tru9I	TTAA	1 cut(s)	101
TscAI	CASTG	3 cut(s)	195, 255, 336
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	2 cut(s)	53, 184
Tsp45I	GTSAC	1 cut(s)	10
TspDTI	ATGAA	1 cut(s)	83
TspGWI	ACGGA	1 cut(s)	47
TspRI	CASTG	3 cut(s)	195, 255, 336
Tth111I	GACNNNGTC	1 cut(s)	358
Van91I	CCANNNNNTGG	1 cut(s)	167
VneI	GTGCAC	1 cut(s)	126
VpaK11BI	GGWCC	2 cut(s)	170, 272
XbaI	TCTAGA	1 cut(s)	205
XceI	RCATGY	1 cut(s)	307
XcmI	CCANNNNNNNNNTGG	1 cut(s)	46
XspI	CTAG	2 cut(s)	206, 324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.