Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0013637

Physical Location & Seq

Genomic Coordinates Forward (+)

13150685 .. 13151305

Gene Structure 621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001264

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGTCAATCAGTGATGCCATGAGGACCCAATTTGCACAAACTGCTCCGGCCATGATAGGCAATATTTCTATTGAAGAGCAACATCTCAGGATCGACAATGCCAGGTTAAAGGATGAGTTAGACCGGGTTTGTGTACTTGCCGACAAGTTCTTGGGCCACCCAATTTCATCTCTTGGTCCATCAATGGGGCCGCCACTACCGAGTTTAGCTCTAGAACTCGGAGTTGGGAACAATGGGTTCGGTGGGATGAGCTCAGTGGCTACAACAATGCCATTGGGACCCGATTTCAGAGCGAGACTTGGGGGTGGCATGTCTATTGTGGCTCACACTAGGCCGGTGGCGGGAGGGCTCGATGAGAGGACTATGTTTTTGGAACTAGCTTTGGCGGCCATGGATGAGCTTGTGAAGGTGGCTCAGACTGATGAGCCACTTTGGATGAGGAGCTTGGAAGGTGGGAGAGAGAGAAGCCAAATCCATGGCTTGGATGGCGGGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009628 GO:0009653 GO:0009664 GO:0009791 GO:0009827 GO:0009888 GO:0009889 GO:0009908 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0022622 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042335 GO:0042545 GO:0043473 GO:0043476 GO:0043478 GO:0043479 GO:0043480 GO:0043481 GO:0045229 GO:0045595 GO:0045596 GO:0048364 GO:0048367 GO:0048437 GO:0048468 GO:0048469 GO:0048497 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071554 GO:0071555 GO:0071669 GO:0071695 GO:0071840 GO:0080090 GO:0090558 GO:0090567 GO:0090627 GO:0090700 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

166

Amino Acids

17.51

Weight (kDa)

5.13

Isoelectric Point (pI)

46.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013637)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g12720
prunus_persica	Prupe.4G116000_v2.0.a1
pyrus_communis	pycom10g19230
rosa_chinensis	RchiOBHm_Chr5g0020711
rosa_laevigata	RLG00000001170 RLG00000001264 RLG00000015227 RLG00000032555
rosa_multiflora	Rmu_sc0002527.1_g000001 Rmu_ssc0000162.1_g000028
rosa_roxburghii	Rroxscaffold_1G00057590
rosa_rugosa	Rorug05G0062600
rosa_samantha	Rh5AG152300 Rh5BG152000 Rh5CG163500 Rh5CG532100 Rh5DG151500
rosa_wichuraiana	Rw5G013500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	481
AciI	CCGC	4 cut(s)	191, 341, 386, 489
AclWI	GGATC	1 cut(s)	98
AcoI	YGGCCR	2 cut(s)	48, 387
AfaI	GTAC	1 cut(s)	135
AfiI	CCNNNNNNNGG	3 cut(s)	185, 341, 481
AgsI	TTSAA	1 cut(s)	74
AjnI	CCWGG	1 cut(s)	101
AjuI	GAANNNNNNNTTGG	2 cut(s)	207, 239
AluBI	AGCT	5 cut(s)	209, 252, 380, 400, 444
AluI	AGCT	5 cut(s)	209, 252, 380, 400, 444
Alw21I	GWGCWC	1 cut(s)	254
Alw26I	GTCTC	1 cut(s)	289
AlwI	GGATC	1 cut(s)	98
AoxI	GGCC	5 cut(s)	48, 154, 188, 332, 387
ArsI	GACNNNNNNTTYG	2 cut(s)	352, 384
AspS9I	GGNCC	5 cut(s)	24, 154, 176, 188, 278
AsuC2I	CCSGG	1 cut(s)	125
AvaII	GGWCC	3 cut(s)	24, 176, 278
BanII	GRGCYC	2 cut(s)	254, 351
Bbv12I	GWGCWC	1 cut(s)	254
BccI	CCATC	2 cut(s)	187, 479
BciT130I	CCWGG	1 cut(s)	103
BcnI	CCSGG	1 cut(s)	125
BcoDI	GTCTC	1 cut(s)	289
BfaI	CTAG	3 cut(s)	212, 330, 377
BisI	GCNGC	2 cut(s)	191, 387
BlsI	GCNGC	2 cut(s)	192, 388
Bme1390I	CCNGG	2 cut(s)	103, 125
Bme18I	GGWCC	3 cut(s)	24, 176, 278
BmgT120I	GGNCC	5 cut(s)	24, 154, 176, 188, 278
BmiI	GGNNCC	4 cut(s)	26, 189, 279, 280
BmrFI	CCNGG	2 cut(s)	103, 125
BmsI	GCATC	1 cut(s)	4
BplI	GAGNNNNNCTC	2 cut(s)	193, 225
BpuMI	CCSGG	1 cut(s)	125
BsaJI	CCNNGG	2 cut(s)	390, 475
Bsc4I	CCNNNNNNNGG	3 cut(s)	185, 341, 481
Bse118I	RCCGGY	1 cut(s)	334
BseBI	CCWGG	1 cut(s)	103
BseDI	CCNNGG	2 cut(s)	390, 475
BseGI	GGATG	5 cut(s)	118, 252, 400, 441, 490
BseLI	CCNNNNNNNGG	3 cut(s)	185, 341, 481
BseMII	CTCAG	3 cut(s)	100, 267, 428
BseRI	GAGGAG	1 cut(s)	454
BshFI	GGCC	5 cut(s)	50, 156, 190, 334, 389
BsiHKAI	GWGCWC	1 cut(s)	254
BsiSI	CCGG	3 cut(s)	47, 124, 335
BslFI	GGGAC	1 cut(s)	291
BslI	CCNNNNNNNGG	3 cut(s)	185, 341, 481
BsmAI	GTCTC	1 cut(s)	289
BsmFI	GGGAC	1 cut(s)	291
BsnI	GGCC	5 cut(s)	50, 156, 190, 334, 389
Bsp1286I	GDGCHC	2 cut(s)	254, 351
Bsp143I	GATC	1 cut(s)	90
Bsp19I	CCATGG	2 cut(s)	390, 475
BspACI	CCGC	4 cut(s)	191, 341, 386, 489
BspANI	GGCC	5 cut(s)	50, 156, 190, 334, 389
BspCNI	CTCAG	3 cut(s)	99, 266, 427
BspLI	GGNNCC	4 cut(s)	26, 189, 279, 280
BspPI	GGATC	1 cut(s)	98
BspQI	GCTCTTC	1 cut(s)	69
BsrFI	RCCGGY	1 cut(s)	334
BssAI	RCCGGY	1 cut(s)	334
BssECI	CCNNGG	2 cut(s)	390, 475
BssMI	GATC	1 cut(s)	90
BssT1I	CCWWGG	2 cut(s)	390, 475
Bst2UI	CCWGG	1 cut(s)	103
Bst6I	CTCTTC	1 cut(s)	69
BstAPI	GCANNNNNTGC	1 cut(s)	41
BstDEI	CTNAG	3 cut(s)	86, 253, 414
BstDSI	CCRYGG	2 cut(s)	390, 475
BstF5I	GGATG	5 cut(s)	118, 252, 400, 441, 490
BstKTI	GATC	1 cut(s)	93
BstMAI	GTCTC	1 cut(s)	289
BstMBI	GATC	1 cut(s)	90
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 386, 486
BstNI	CCWGG	1 cut(s)	103
BstNSI	RCATGY	1 cut(s)	313
BstSCI	CCNGG	2 cut(s)	101, 123
BstXI	CCANNNNNNTGG	1 cut(s)	476
BsuRI	GGCC	5 cut(s)	50, 156, 190, 334, 389
BtgI	CCRYGG	2 cut(s)	390, 475
BtsCI	GGATG	5 cut(s)	118, 252, 400, 441, 490
BtsIMutI	CAGTG	2 cut(s)	16, 261
Cfr10I	RCCGGY	1 cut(s)	334
Cfr13I	GGNCC	5 cut(s)	24, 154, 176, 188, 278
Csp6I	GTAC	1 cut(s)	134
CviAII	CATG	6 cut(s)	19, 52, 310, 391, 476, 495
CviQI	GTAC	1 cut(s)	134
DdeI	CTNAG	3 cut(s)	86, 253, 414
DpnI	GATC	1 cut(s)	92
DpnII	GATC	1 cut(s)	90
EaeI	YGGCCR	2 cut(s)	48, 387
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
Ecl136II	GAGCTC	1 cut(s)	252
Eco130I	CCWWGG	2 cut(s)	390, 475
Eco24I	GRGCYC	2 cut(s)	254, 351
Eco47I	GGWCC	3 cut(s)	24, 176, 278
Eco53kI	GAGCTC	1 cut(s)	252
EcoICRI	GAGCTC	1 cut(s)	252
EcoO109I	RGGNCCY	2 cut(s)	24, 278
EcoRII	CCWGG	1 cut(s)	101
EcoT14I	CCWWGG	2 cut(s)	390, 475
EcoT38I	GRGCYC	2 cut(s)	254, 351
ErhI	CCWWGG	2 cut(s)	390, 475
FaeI	CATG	6 cut(s)	22, 55, 313, 394, 479, 498
FaiI	YATR	7 cut(s)	20, 53, 311, 365, 392, 477, 496
FaqI	GGGAC	1 cut(s)	291
FatI	CATG	6 cut(s)	18, 51, 309, 390, 475, 494
FauI	CCCGC	2 cut(s)	334, 482
Fnu4HI	GCNGC	2 cut(s)	191, 387
FokI	GGATG	4 cut(s)	125, 259, 407, 448
FriOI	GRGCYC	2 cut(s)	254, 351
Fsp4HI	GCNGC	2 cut(s)	191, 387
FspBI	CTAG	3 cut(s)	212, 330, 377
GluI	GCNGC	2 cut(s)	191, 387
HaeIII	GGCC	5 cut(s)	50, 156, 190, 334, 389
HapII	CCGG	3 cut(s)	47, 124, 335
Hin1II	CATG	6 cut(s)	22, 55, 313, 394, 479, 498
HpaII	CCGG	3 cut(s)	47, 124, 335
Hpy166II	GTNNAC	1 cut(s)	134
Hpy188I	TCNGA	3 cut(s)	221, 290, 417
Hpy188III	TCNNGA	2 cut(s)	88, 212
Hpy8I	GTNNAC	1 cut(s)	134
HpyAV	CCTTC	2 cut(s)	400, 443
HpyCH4V	TGCA	1 cut(s)	35
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 386, 486
HpyF3I	CTNAG	3 cut(s)	86, 253, 414
Hsp92II	CATG	6 cut(s)	22, 55, 313, 394, 479, 498
KflI	GGGWCCC	1 cut(s)	278
Kzo9I	GATC	1 cut(s)	90
LguI	GCTCTTC	1 cut(s)	69
LmnI	GCTCC	2 cut(s)	49, 441
LpnPI	CCDG	6 cut(s)	60, 73, 88, 115, 137, 348
LweI	GCATC	1 cut(s)	4
MaeI	CTAG	3 cut(s)	212, 330, 377
MalI	GATC	1 cut(s)	92
MboI	GATC	1 cut(s)	90
MboII	GAAGA	1 cut(s)	86
MhlI	GDGCHC	2 cut(s)	254, 351
MluCI	AATT	2 cut(s)	29, 162
MnlI	CCTC	4 cut(s)	15, 338, 351, 432
MseI	TTAA	1 cut(s)	107
MspI	CCGG	3 cut(s)	47, 124, 335
MspR9I	CCNGG	2 cut(s)	103, 125
MvaI	CCWGG	1 cut(s)	103
MwoI	GCNNNNNNNGC	3 cut(s)	41, 386, 486
NciI	CCSGG	1 cut(s)	125
NcoI	CCATGG	2 cut(s)	390, 475
NdeII	GATC	1 cut(s)	90
NlaIII	CATG	6 cut(s)	22, 55, 313, 394, 479, 498
NlaIV	GGNNCC	4 cut(s)	26, 189, 279, 280
NspI	RCATGY	1 cut(s)	313
PciSI	GCTCTTC	1 cut(s)	69
PflMI	CCANNNNNTGG	1 cut(s)	481
PkrI	GCNGC	2 cut(s)	192, 388
PpuMI	RGGWCCY	2 cut(s)	24, 278
Psp124BI	GAGCTC	1 cut(s)	254
Psp5II	RGGWCCY	2 cut(s)	24, 278
Psp6I	CCWGG	1 cut(s)	101
PspGI	CCWGG	1 cut(s)	101
PspN4I	GGNNCC	4 cut(s)	26, 189, 279, 280
PspPI	GGNCC	5 cut(s)	24, 154, 176, 188, 278
PspPPI	RGGWCCY	2 cut(s)	24, 278
RsaI	GTAC	1 cut(s)	135
RsaNI	GTAC	1 cut(s)	134
SacI	GAGCTC	1 cut(s)	254
SapI	GCTCTTC	1 cut(s)	69
SaqAI	TTAA	1 cut(s)	107
SatI	GCNGC	2 cut(s)	191, 387
Sau3AI	GATC	1 cut(s)	90
Sau96I	GGNCC	5 cut(s)	24, 154, 176, 188, 278
ScrFI	CCNGG	2 cut(s)	103, 125
SduI	GDGCHC	2 cut(s)	254, 351
SetI	ASST	8 cut(s)	107, 211, 254, 382, 402, 411, 446, 454
SfaNI	GCATC	1 cut(s)	4
SinI	GGWCC	3 cut(s)	24, 176, 278
Sse9I	AATT	2 cut(s)	29, 162
SsiI	CCGC	4 cut(s)	191, 341, 386, 489
SspI	AATATT	1 cut(s)	64
SspMI	CTAG	3 cut(s)	212, 330, 377
SstI	GAGCTC	1 cut(s)	254
StyD4I	CCNGG	2 cut(s)	101, 123
StyI	CCWWGG	2 cut(s)	390, 475
TaqI	TCGA	2 cut(s)	93, 351
TasI	AATT	2 cut(s)	29, 162
TatI	WGTACW	1 cut(s)	133
TauI	GCSGC	2 cut(s)	193, 389
Tru1I	TTAA	1 cut(s)	107
Tru9I	TTAA	1 cut(s)	107
TscAI	CASTG	2 cut(s)	16, 261
TspDTI	ATGAA	1 cut(s)	156
TspRI	CASTG	2 cut(s)	16, 261
Van91I	CCANNNNNTGG	1 cut(s)	481
VpaK11BI	GGWCC	3 cut(s)	24, 176, 278
XbaI	TCTAGA	1 cut(s)	211
XceI	RCATGY	1 cut(s)	313
XcmI	CCANNNNNNNNNTGG	1 cut(s)	482
XspI	CTAG	3 cut(s)	212, 330, 377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.