Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0013637

Physical Location & Seq

Genomic Coordinates Forward (+)

74415074 .. 74415271

Gene Structure 198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG532100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGATAGGCGATATTTCTATTGAAAAGCAACATCCCAGGATCGACGATGCCCGGTTAAAGGACAAGTTAGACCGGGTTTGTGCACTTGCCGGCAAGTTCTTGGGCCATCCAATTTCGTCTCTTGCTCCATCAATGGGGCCGCCACTGCCGAGTTTAGCTCTAGAACTTGGAGTTAGGAACAATGGGTTGGTAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009628 GO:0009653 GO:0009664 GO:0009791 GO:0009827 GO:0009888 GO:0009889 GO:0009908 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0022622 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042335 GO:0042545 GO:0043473 GO:0043476 GO:0043478 GO:0043479 GO:0043480 GO:0043481 GO:0045229 GO:0045595 GO:0045596 GO:0048364 GO:0048367 GO:0048437 GO:0048468 GO:0048469 GO:0048497 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071554 GO:0071555 GO:0071669 GO:0071695 GO:0071840 GO:0080090 GO:0090558 GO:0090567 GO:0090627 GO:0090700 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

65

Amino Acids

6.9

Weight (kDa)

7.96

Isoelectric Point (pI)

27.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013637)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g12720
prunus_persica	Prupe.4G116000_v2.0.a1
pyrus_communis	pycom10g19230
rosa_chinensis	RchiOBHm_Chr5g0020711
rosa_laevigata	RLG00000001170 RLG00000001264 RLG00000015227 RLG00000032555
rosa_multiflora	Rmu_sc0002527.1_g000001 Rmu_ssc0000162.1_g000028
rosa_roxburghii	Rroxscaffold_1G00057590
rosa_rugosa	Rorug05G0062600
rosa_samantha	Rh5AG152300 Rh5BG152000 Rh5CG163500 Rh5CG532100 Rh5DG151500
rosa_wichuraiana	Rw5G013500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	140
AclWI	GGATC	1 cut(s)	47
AfiI	CCNNNNNNNGG	2 cut(s)	58, 134
AgsI	TTSAA	1 cut(s)	23
AjnI	CCWGG	1 cut(s)	35
AjuI	GAANNNNNNNTTGG	1 cut(s)	170
AluBI	AGCT	1 cut(s)	158
AluI	AGCT	1 cut(s)	158
Alw21I	GWGCWC	1 cut(s)	85
Alw26I	GTCTC	1 cut(s)	123
Alw44I	GTGCAC	1 cut(s)	81
AlwI	GGATC	1 cut(s)	47
AoxI	GGCC	2 cut(s)	103, 137
ApaLI	GTGCAC	1 cut(s)	81
AspS9I	GGNCC	2 cut(s)	103, 137
AsuC2I	CCSGG	2 cut(s)	52, 74
BaeGI	GKGCMC	1 cut(s)	85
Bbv12I	GWGCWC	1 cut(s)	85
BccI	CCATC	2 cut(s)	114, 136
BciT130I	CCWGG	1 cut(s)	37
BcnI	CCSGG	2 cut(s)	52, 74
BcoDI	GTCTC	1 cut(s)	123
BfaI	CTAG	1 cut(s)	161
BisI	GCNGC	1 cut(s)	140
BlsI	GCNGC	1 cut(s)	141
Bme1390I	CCNGG	3 cut(s)	37, 52, 74
BmgT120I	GGNCC	2 cut(s)	103, 137
BmiI	GGNNCC	1 cut(s)	138
BmrFI	CCNGG	3 cut(s)	37, 52, 74
BmsI	GCATC	1 cut(s)	37
BplI	GAGNNNNNCTC	2 cut(s)	142, 174
BpuMI	CCSGG	2 cut(s)	52, 74
BsaJI	CCNNGG	1 cut(s)	35
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 134
Bse118I	RCCGGY	1 cut(s)	89
BseBI	CCWGG	1 cut(s)	37
BseDI	CCNNGG	1 cut(s)	35
BseGI	GGATG	2 cut(s)	31, 106
BseLI	CCNNNNNNNGG	2 cut(s)	58, 134
BseSI	GKGCMC	1 cut(s)	85
BshFI	GGCC	2 cut(s)	105, 139
BsiHKAI	GWGCWC	1 cut(s)	85
BsiSI	CCGG	3 cut(s)	52, 73, 90
BslI	CCNNNNNNNGG	2 cut(s)	58, 134
BsmAI	GTCTC	1 cut(s)	123
BsmBI	CGTCTC	1 cut(s)	123
BsnI	GGCC	2 cut(s)	105, 139
Bsp1286I	GDGCHC	1 cut(s)	85
Bsp143I	GATC	1 cut(s)	39
BspACI	CCGC	1 cut(s)	140
BspANI	GGCC	2 cut(s)	105, 139
BspLI	GGNNCC	1 cut(s)	138
BspPI	GGATC	1 cut(s)	47
BsrFI	RCCGGY	1 cut(s)	89
BssAI	RCCGGY	1 cut(s)	89
BssECI	CCNNGG	1 cut(s)	35
BssMI	GATC	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	37
BstC8I	GCNNGC	1 cut(s)	91
BstF5I	GGATG	2 cut(s)	31, 106
BstKTI	GATC	1 cut(s)	42
BstMAI	GTCTC	1 cut(s)	123
BstMBI	GATC	1 cut(s)	39
BstMWI	GCNNNNNNNGC	1 cut(s)	145
BstNI	CCWGG	1 cut(s)	37
BstSCI	CCNGG	3 cut(s)	35, 50, 72
BstSLI	GKGCMC	1 cut(s)	85
BsuRI	GGCC	2 cut(s)	105, 139
BtsCI	GGATG	2 cut(s)	31, 106
BtsI	GCAGTG	1 cut(s)	143
BtsIMutI	CAGTG	1 cut(s)	143
Cac8I	GCNNGC	1 cut(s)	91
Cfr10I	RCCGGY	1 cut(s)	89
Cfr13I	GGNCC	2 cut(s)	103, 137
CviJI	RGCY	3 cut(s)	105, 139, 158
CviKI_1	RGCY	3 cut(s)	105, 139, 158
DpnI	GATC	1 cut(s)	41
DpnII	GATC	1 cut(s)	39
EcoRII	CCWGG	1 cut(s)	35
Esp3I	CGTCTC	1 cut(s)	123
Fnu4HI	GCNGC	1 cut(s)	140
FokI	GGATG	2 cut(s)	18, 93
Fsp4HI	GCNGC	1 cut(s)	140
FspBI	CTAG	1 cut(s)	161
GluI	GCNGC	1 cut(s)	140
HaeIII	GGCC	2 cut(s)	105, 139
HapII	CCGG	3 cut(s)	52, 73, 90
HpaII	CCGG	3 cut(s)	52, 73, 90
Hpy166II	GTNNAC	1 cut(s)	83
Hpy188III	TCNNGA	1 cut(s)	161
Hpy8I	GTNNAC	1 cut(s)	83
Hpy99I	CGWCG	1 cut(s)	47
HpyCH4V	TGCA	1 cut(s)	83
HpyF10VI	GCNNNNNNNGC	1 cut(s)	145
KroI	GCCGGC	1 cut(s)	89
KroNI	GCCGGC	1 cut(s)	91
Kzo9I	GATC	1 cut(s)	39
LmnI	GCTCC	1 cut(s)	130
LpnPI	CCDG	5 cut(s)	22, 49, 65, 86, 103
LweI	GCATC	1 cut(s)	37
MaeI	CTAG	1 cut(s)	161
MalI	GATC	1 cut(s)	41
MboI	GATC	1 cut(s)	39
MhlI	GDGCHC	1 cut(s)	85
MluCI	AATT	1 cut(s)	111
MroNI	GCCGGC	1 cut(s)	89
MseI	TTAA	1 cut(s)	56
MspI	CCGG	3 cut(s)	52, 73, 90
MspR9I	CCNGG	3 cut(s)	37, 52, 74
MvaI	CCWGG	1 cut(s)	37
MwoI	GCNNNNNNNGC	1 cut(s)	145
NaeI	GCCGGC	1 cut(s)	91
NciI	CCSGG	2 cut(s)	52, 74
NdeII	GATC	1 cut(s)	39
NgoMIV	GCCGGC	1 cut(s)	89
NlaIV	GGNNCC	1 cut(s)	138
NmeAIII	GCCGAG	1 cut(s)	174
PdiI	GCCGGC	1 cut(s)	91
PkrI	GCNGC	1 cut(s)	141
Psp6I	CCWGG	1 cut(s)	35
PspGI	CCWGG	1 cut(s)	35
PspN4I	GGNNCC	1 cut(s)	138
PspPI	GGNCC	2 cut(s)	103, 137
SaqAI	TTAA	1 cut(s)	56
SatI	GCNGC	1 cut(s)	140
Sau3AI	GATC	1 cut(s)	39
Sau96I	GGNCC	2 cut(s)	103, 137
ScrFI	CCNGG	3 cut(s)	37, 52, 74
SduI	GDGCHC	1 cut(s)	85
SetI	ASST	1 cut(s)	160
SfaNI	GCATC	1 cut(s)	37
Sse9I	AATT	1 cut(s)	111
SsiI	CCGC	1 cut(s)	140
SspMI	CTAG	1 cut(s)	161
StyD4I	CCNGG	3 cut(s)	35, 50, 72
TaqI	TCGA	1 cut(s)	42
TasI	AATT	1 cut(s)	111
TauI	GCSGC	1 cut(s)	142
Tru1I	TTAA	1 cut(s)	56
Tru9I	TTAA	1 cut(s)	56
TscAI	CASTG	1 cut(s)	150
TspRI	CASTG	1 cut(s)	150
VneI	GTGCAC	1 cut(s)	81
XbaI	TCTAGA	1 cut(s)	160
XspI	CTAG	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.