RLG00000032555

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0013637
Physical Location & Seq
Forward (+)
16410411 .. 16411124
714 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032555

Sequence Viewer

Length: 714 bp
ATGGTGCCTGGTTCTAAGGAGTGGGAGCAATACTACCAGAAAAGCTTCACTCAAACTCCCATGAATGGAGGAGGGATGATTTCATCAGATTCAACTGGTGTGACAACAAGTAGTAGTGCTGTTGTGACTGATCAGAGCTTCATCAGTACCAGCCCCAATAATGGAGGTCAACTAACTCCTACCGGAAGTGTAGCGAAACCAATCCGGCGGAGGTCTAGGGTTTCCAAGAAGACTCCCATCACTCTCCTTAACGCCAACGCCAACAACTTTCGAGCTTTGGTTCAACAATTCACAGGCTGTGCCGCTTCTAGCACGCCAATTTCGTTCGGTAACCAAAAGGGTCCGATCAATCTGAGTTTCGGAGTCAATAGTGCAGGTACTAGTTCTGTAGTTATGGCGCCTTTTGGAAATCCCAACTATAGTTACAACCAGCAGCAGCAGCAACAATTGCAGCGGCTAGCGCAAGCGCAGCAAGAACAGCAACAACAACGACAACCGCTACTGCAACTGCAAGAAAACCATGTCCAACTGCATCAAGAAGAGCAACAGCGTATGTACCCGTTTGATAATGTTAGTGGTAGTGATCATGTGTTTCATTATTCGTCGAATTCGAGTAGTTCTGGTTATAATCCTATGCAAGCTGGTATGGAGATCGGGGATGGGTTTGAGGTCATGGGTCAGGAAGATATATCTTTGCATGAATTGCTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

238

Amino Acids

25.93

Weight (kDa)

5.93

Isoelectric Point (pI)

53.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 81 - 102 2.5e-07 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 627
Acc36I ACCTGC 1 cut(s) 365
AccB1I GGYRCC 2 cut(s) 4, 397
AciI CCGC 4 cut(s) 208, 303, 454, 497
AcsI RAATTY 1 cut(s) 607
AcyI GRCGYC 1 cut(s) 398
AfaI GTAC 3 cut(s) 148, 379, 557
AfiI CCNNNNNNNGG 2 cut(s) 65, 161
AgsI TTSAA 2 cut(s) 93, 284
AhlI ACTAGT 1 cut(s) 380
AjnI CCWGG 1 cut(s) 7
AluBI AGCT 4 cut(s) 45, 138, 275, 641
AluI AGCT 4 cut(s) 45, 138, 275, 641
ApeKI GCWGC 5 cut(s) 433, 436, 439, 451, 469
ApoI RAATTY 1 cut(s) 607
Asp700I GAANNNNTTC 1 cut(s) 44
AspLEI GCGC 3 cut(s) 400, 463, 469
AspS9I GGNCC 1 cut(s) 341
AsuNHI GCTAGC 1 cut(s) 457
AvaII GGWCC 1 cut(s) 341
BanI GGYRCC 2 cut(s) 4, 397
BbsI GAAGAC 1 cut(s) 236
BbvI GCAGC 5 cut(s) 445, 448, 451, 463, 481
BccI CCATC 2 cut(s) 245, 653
BciT130I CCWGG 1 cut(s) 9
BclI TGATCA 2 cut(s) 130, 583
BcuI ACTAGT 1 cut(s) 380
BfaI CTAG 4 cut(s) 216, 309, 381, 458
BfmI CTRYAG 2 cut(s) 387, 418
BfoI RGCGCY 1 cut(s) 401
BfuAI ACCTGC 1 cut(s) 365
BisI GCNGC 7 cut(s) 303, 434, 437, 440, 452, 455, 470
BlsI GCNGC 7 cut(s) 304, 435, 438, 441, 453, 456, 471
Bme1390I CCNGG 1 cut(s) 9
Bme18I GGWCC 1 cut(s) 341
BmgT120I GGNCC 1 cut(s) 341
BmiI GGNNCC 3 cut(s) 6, 342, 399
BmrFI CCNGG 1 cut(s) 9
BmsI GCATC 1 cut(s) 541
BmtI GCTAGC 1 cut(s) 461
BpiI GAAGAC 1 cut(s) 236
BsaHI GRCGYC 1 cut(s) 398
BsaWI WCCGGW 1 cut(s) 182
BsaXI ACNNNNNCTCC 2 cut(s) 40, 70
Bsc4I CCNNNNNNNGG 2 cut(s) 65, 161
Bse1I ACTGG 1 cut(s) 100
BseBI CCWGG 1 cut(s) 9
BseGI GGATG 2 cut(s) 81, 664
BseLI CCNNNNNNNGG 2 cut(s) 65, 161
BseMII CTCAG 1 cut(s) 344
BseNI ACTGG 1 cut(s) 100
BseRI GAGGAG 1 cut(s) 84
BseXI GCAGC 5 cut(s) 445, 448, 451, 463, 481
BsgI GTGCAG 1 cut(s) 393
BshNI GGYRCC 2 cut(s) 4, 397
BsiSI CCGG 2 cut(s) 183, 205
BslI CCNNNNNNNGG 2 cut(s) 65, 161
Bsp143I GATC 4 cut(s) 130, 345, 583, 651
BspACI CCGC 4 cut(s) 208, 303, 454, 497
BspCNI CTCAG 1 cut(s) 345
BspLI GGNNCC 3 cut(s) 6, 342, 399
BspMI ACCTGC 1 cut(s) 365
BspOI GCTAGC 1 cut(s) 461
BspQI GCTCTTC 1 cut(s) 534
BspT107I GGYRCC 2 cut(s) 4, 397
BsrI ACTGG 1 cut(s) 100
BssMI GATC 4 cut(s) 130, 345, 583, 651
BssNI GRCGYC 1 cut(s) 398
Bst2UI CCWGG 1 cut(s) 9
Bst6I CTCTTC 1 cut(s) 534
BstACI GRCGYC 1 cut(s) 398
BstAPI GCANNNNNTGC 2 cut(s) 448, 703
BstC8I GCNNGC 4 cut(s) 314, 459, 465, 639
BstDEI CTNAG 2 cut(s) 15, 353
BstEII GGTNACC 1 cut(s) 329
BstF5I GGATG 2 cut(s) 81, 664
BstH2I RGCGCY 1 cut(s) 401
BstHHI GCGC 3 cut(s) 400, 463, 469
BstKTI GATC 4 cut(s) 133, 348, 586, 654
BstMBI GATC 4 cut(s) 130, 345, 583, 651
BstMWI GCNNNNNNNGC 6 cut(s) 439, 448, 460, 469, 478, 703
BstNI CCWGG 1 cut(s) 9
BstPI GGTNACC 1 cut(s) 329
BstSCI CCNGG 1 cut(s) 7
BstSFI CTRYAG 2 cut(s) 387, 418
BstV1I GCAGC 5 cut(s) 445, 448, 451, 463, 481
BstV2I GAAGAC 1 cut(s) 236
BtsCI GGATG 2 cut(s) 81, 664
BveI ACCTGC 1 cut(s) 365
Cac8I GCNNGC 4 cut(s) 314, 459, 465, 639
CfoI GCGC 3 cut(s) 400, 463, 469
Cfr13I GGNCC 1 cut(s) 341
Csp6I GTAC 3 cut(s) 147, 378, 556
CviAII CATG 5 cut(s) 61, 521, 587, 673, 698
CviJI RGCY 7 cut(s) 45, 138, 153, 275, 297, 457, 641
CviKI_1 RGCY 7 cut(s) 45, 138, 153, 275, 297, 457, 641
CviQI GTAC 3 cut(s) 147, 378, 556
DdeI CTNAG 2 cut(s) 15, 353
DinI GGCGCC 1 cut(s) 399
DpnI GATC 4 cut(s) 132, 347, 585, 653
DpnII GATC 4 cut(s) 130, 345, 583, 651
Eam1104I CTCTTC 1 cut(s) 534
EarI CTCTTC 1 cut(s) 534
EciI GGCGGA 1 cut(s) 223
Eco47I GGWCC 1 cut(s) 341
Eco91I GGTNACC 1 cut(s) 329
EcoO65I GGTNACC 1 cut(s) 329
EcoRI GAATTC 1 cut(s) 607
EcoRII CCWGG 1 cut(s) 7
EgeI GGCGCC 1 cut(s) 399
EheI GGCGCC 1 cut(s) 399
FaeI CATG 5 cut(s) 64, 524, 590, 676, 701
FatI CATG 5 cut(s) 60, 520, 586, 672, 697
FbaI TGATCA 2 cut(s) 130, 583
Fnu4HI GCNGC 7 cut(s) 303, 434, 437, 440, 452, 455, 470
FokI GGATG 2 cut(s) 88, 671
Fsp4HI GCNGC 7 cut(s) 303, 434, 437, 440, 452, 455, 470
FspBI CTAG 4 cut(s) 216, 309, 381, 458
GlaI GCGC 3 cut(s) 399, 462, 468
GluI GCNGC 7 cut(s) 303, 434, 437, 440, 452, 455, 470
HaeII RGCGCY 1 cut(s) 401
HapII CCGG 2 cut(s) 183, 205
HhaI GCGC 3 cut(s) 400, 463, 469
Hin1I GRCGYC 1 cut(s) 398
Hin1II CATG 5 cut(s) 64, 524, 590, 676, 701
Hin6I GCGC 3 cut(s) 398, 461, 467
HinP1I GCGC 3 cut(s) 398, 461, 467
HincII GTYRAC 1 cut(s) 170
HindII GTYRAC 1 cut(s) 170
HindIII AAGCTT 1 cut(s) 43
HinfI GANTC 3 cut(s) 89, 232, 363
HpaII CCGG 2 cut(s) 183, 205
Hpy166II GTNNAC 1 cut(s) 170
Hpy188I TCNGA 5 cut(s) 88, 135, 345, 354, 362
Hpy188III TCNNGA 2 cut(s) 536, 680
Hpy8I GTNNAC 1 cut(s) 170
Hpy99I CGWCG 1 cut(s) 607
HpyCH4V TGCA 7 cut(s) 374, 451, 505, 511, 532, 637, 697
HpyF10VI GCNNNNNNNGC 6 cut(s) 439, 448, 460, 469, 478, 703
HpyF3I CTNAG 2 cut(s) 15, 353
Hsp92I GRCGYC 1 cut(s) 398
Hsp92II CATG 5 cut(s) 64, 524, 590, 676, 701
HspAI GCGC 3 cut(s) 398, 461, 467
KasI GGCGCC 1 cut(s) 397
Ksp22I TGATCA 2 cut(s) 130, 583
Kzo9I GATC 4 cut(s) 130, 345, 583, 651
LguI GCTCTTC 1 cut(s) 534
LmnI GCTCC 1 cut(s) 25
Lsp1109I GCAGC 5 cut(s) 445, 448, 451, 463, 481
LweI GCATC 1 cut(s) 541
MaeI CTAG 4 cut(s) 216, 309, 381, 458
MaeIII GTNAC 4 cut(s) 100, 124, 329, 422
MalI GATC 4 cut(s) 132, 347, 585, 653
MboI GATC 4 cut(s) 130, 345, 583, 651
MboII GAAGA 3 cut(s) 241, 551, 695
MfeI CAATTG 1 cut(s) 446
MluCI AATT 5 cut(s) 287, 318, 446, 607, 701
Mly113I GGCGCC 1 cut(s) 398
MlyI GAGTC 2 cut(s) 226, 372
MmeI TCCRAC 1 cut(s) 550
MnlI CCTC 5 cut(s) 62, 65, 158, 204, 661
MroXI GAANNNNTTC 1 cut(s) 44
MseI TTAA 2 cut(s) 249, 712
MspA1I CMGCKG 1 cut(s) 454
MspI CCGG 2 cut(s) 183, 205
MspR9I CCNGG 1 cut(s) 9
MunI CAATTG 1 cut(s) 446
MvaI CCWGG 1 cut(s) 9
MwoI GCNNNNNNNGC 6 cut(s) 439, 448, 460, 469, 478, 703
NarI GGCGCC 1 cut(s) 398
NdeII GATC 4 cut(s) 130, 345, 583, 651
NheI GCTAGC 1 cut(s) 457
NlaIII CATG 5 cut(s) 64, 524, 590, 676, 701
NlaIV GGNNCC 3 cut(s) 6, 342, 399
NmuCI GTSAC 2 cut(s) 100, 124
PciSI GCTCTTC 1 cut(s) 534
PcsI WCGNNNNNNNCGW 2 cut(s) 320, 608
PdmI GAANNNNTTC 1 cut(s) 44
PfeI GAWTC 1 cut(s) 89
PkrI GCNGC 7 cut(s) 304, 435, 438, 441, 453, 456, 471
PleI GAGTC 2 cut(s) 226, 371
PluTI GGCGCC 1 cut(s) 401
PpsI GAGTC 2 cut(s) 226, 371
PsiI TTATAA 1 cut(s) 627
Psp6I CCWGG 1 cut(s) 7
PspEI GGTNACC 1 cut(s) 329
PspGI CCWGG 1 cut(s) 7
PspN4I GGNNCC 3 cut(s) 6, 342, 399
PspPI GGNCC 1 cut(s) 341
RsaI GTAC 3 cut(s) 148, 379, 557
RsaNI GTAC 3 cut(s) 147, 378, 556
SapI GCTCTTC 1 cut(s) 534
SaqAI TTAA 2 cut(s) 249, 712
SatI GCNGC 7 cut(s) 303, 434, 437, 440, 452, 455, 470
Sau3AI GATC 4 cut(s) 130, 345, 583, 651
Sau96I GGNCC 1 cut(s) 341
SchI GAGTC 2 cut(s) 226, 372
ScrFI CCNGG 1 cut(s) 9
SetI ASST 8 cut(s) 47, 140, 169, 215, 277, 379, 643, 672
SfaNI GCATC 1 cut(s) 541
SfcI CTRYAG 2 cut(s) 387, 418
SfoI GGCGCC 1 cut(s) 399
SinI GGWCC 1 cut(s) 341
SpeI ACTAGT 1 cut(s) 380
Sse9I AATT 5 cut(s) 287, 318, 446, 607, 701
SsiI CCGC 4 cut(s) 208, 303, 454, 497
SspDI GGCGCC 1 cut(s) 397
SspMI CTAG 4 cut(s) 216, 309, 381, 458
StyD4I CCNGG 1 cut(s) 7
TaqI TCGA 3 cut(s) 271, 605, 611
TasI AATT 5 cut(s) 287, 318, 446, 607, 701
TauI GCSGC 2 cut(s) 305, 457
TfiI GAWTC 1 cut(s) 89
Tru1I TTAA 2 cut(s) 249, 712
Tru9I TTAA 2 cut(s) 249, 712
TseFI GTSAC 2 cut(s) 100, 124
TseI GCWGC 5 cut(s) 433, 436, 439, 451, 469
Tsp45I GTSAC 2 cut(s) 100, 124
TspDTI ATGAA 5 cut(s) 72, 77, 130, 584, 714
VpaK11BI GGWCC 1 cut(s) 341
XapI RAATTY 1 cut(s) 607
XmnI GAANNNNTTC 1 cut(s) 44
XspI CTAG 4 cut(s) 216, 309, 381, 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.