Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000162.1

Orthogroup ID

OG0013637

Physical Location & Seq

Genomic Coordinates Forward (+)

148958 .. 149428

Gene Structure 471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000162.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

atgataggcaatatttctattgaagagcaacatctcaggatcgacaatgcctggttaaaggacgagttagaccgggtttgtgcacttgccggcaagttcttgggccacccaatttcgtctcttggtccatcaatggggtccccactgccgagttcagctctagaactcggagttgggaacaatgggttctgtgggatgagctcagtggctacaacaatgccattgggacccgattttggagcaggacttgggggtggcatgtctattgtggctcacactaggctggtggcaggaaggctcgacgagaggactatgtttttggagctagctttggcggccatggatgagcttgtgaaggtggctcagactgatgagccactttggctgaggagcttggaaggtgggagaggtgctgatggcttttttcttatccatatcgttgtcagtttgacagccattggattgagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009628 GO:0009653 GO:0009664 GO:0009791 GO:0009827 GO:0009888 GO:0009889 GO:0009908 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0022622 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042335 GO:0042545 GO:0043473 GO:0043476 GO:0043478 GO:0043479 GO:0043480 GO:0043481 GO:0045229 GO:0045595 GO:0045596 GO:0048364 GO:0048367 GO:0048437 GO:0048468 GO:0048469 GO:0048497 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071554 GO:0071555 GO:0071669 GO:0071695 GO:0071840 GO:0080090 GO:0090558 GO:0090567 GO:0090627 GO:0090700 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

156

Amino Acids

16.34

Weight (kDa)

4.91

Isoelectric Point (pI)

42.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013637)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g12720
prunus_persica	Prupe.4G116000_v2.0.a1
pyrus_communis	pycom10g19230
rosa_chinensis	RchiOBHm_Chr5g0020711
rosa_laevigata	RLG00000001170 RLG00000001264 RLG00000015227 RLG00000032555
rosa_multiflora	Rmu_sc0002527.1_g000001 Rmu_ssc0000162.1_g000028
rosa_roxburghii	Rroxscaffold_1G00057590
rosa_rugosa	Rorug05G0062600
rosa_samantha	Rh5AG152300 Rh5BG152000 Rh5CG163500 Rh5CG532100 Rh5DG151500
rosa_wichuraiana	Rw5G013500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	335
AclWI	GGATC	1 cut(s)	47
AcoI	YGGCCR	1 cut(s)	336
AfiI	CCNNNNNNNGG	2 cut(s)	134, 236
AgsI	TTSAA	1 cut(s)	23
AjnI	CCWGG	1 cut(s)	50
AjuI	GAANNNNNNNTTGG	2 cut(s)	156, 188
AluBI	AGCT	6 cut(s)	158, 201, 325, 329, 349, 393
AluI	AGCT	6 cut(s)	158, 201, 325, 329, 349, 393
Alw21I	GWGCWC	2 cut(s)	85, 203
Alw26I	GTCTC	1 cut(s)	123
Alw44I	GTGCAC	1 cut(s)	81
AlwI	GGATC	1 cut(s)	47
AoxI	GGCC	2 cut(s)	103, 336
ApaLI	GTGCAC	1 cut(s)	81
ArsI	GACNNNNNNTTYG	2 cut(s)	301, 333
AspS9I	GGNCC	4 cut(s)	103, 125, 138, 227
AsuC2I	CCSGG	1 cut(s)	74
AsuNHI	GCTAGC	1 cut(s)	325
AvaII	GGWCC	3 cut(s)	125, 138, 227
BaeGI	GKGCMC	1 cut(s)	85
BanII	GRGCYC	1 cut(s)	203
Bbv12I	GWGCWC	2 cut(s)	85, 203
BbvCI	CCTCAGC	1 cut(s)	386
BccI	CCATC	2 cut(s)	136, 410
BciT130I	CCWGG	1 cut(s)	52
BcnI	CCSGG	1 cut(s)	74
BcoDI	GTCTC	1 cut(s)	123
BfaI	CTAG	3 cut(s)	161, 279, 326
BglI	GCCNNNNNGGC	1 cut(s)	382
BisI	GCNGC	1 cut(s)	336
BlsI	GCNGC	1 cut(s)	337
Bme1390I	CCNGG	2 cut(s)	52, 74
Bme18I	GGWCC	3 cut(s)	125, 138, 227
BmgT120I	GGNCC	4 cut(s)	103, 125, 138, 227
BmiI	GGNNCC	4 cut(s)	139, 140, 228, 229
BmrFI	CCNGG	2 cut(s)	52, 74
BmtI	GCTAGC	1 cut(s)	329
BplI	GAGNNNNNCTC	2 cut(s)	142, 174
Bpu10I	CCTNAGC	1 cut(s)	386
BpuMI	CCSGG	1 cut(s)	74
BsaJI	CCNNGG	1 cut(s)	339
Bsc4I	CCNNNNNNNGG	2 cut(s)	134, 236
Bse118I	RCCGGY	1 cut(s)	89
BseBI	CCWGG	1 cut(s)	52
BseDI	CCNNGG	1 cut(s)	339
BseGI	GGATG	2 cut(s)	201, 349
BseLI	CCNNNNNNNGG	2 cut(s)	134, 236
BseMII	CTCAG	4 cut(s)	49, 216, 377, 377
BseRI	GAGGAG	1 cut(s)	403
BseSI	GKGCMC	1 cut(s)	85
BshFI	GGCC	2 cut(s)	105, 338
BsiHKAI	GWGCWC	2 cut(s)	85, 203
BsiSI	CCGG	2 cut(s)	73, 90
BslFI	GGGAC	2 cut(s)	124, 240
BslI	CCNNNNNNNGG	2 cut(s)	134, 236
BsmAI	GTCTC	1 cut(s)	123
BsmBI	CGTCTC	1 cut(s)	123
BsmFI	GGGAC	2 cut(s)	124, 240
BsnI	GGCC	2 cut(s)	105, 338
Bsp1286I	GDGCHC	2 cut(s)	85, 203
Bsp143I	GATC	1 cut(s)	39
Bsp19I	CCATGG	1 cut(s)	339
BspACI	CCGC	1 cut(s)	335
BspANI	GGCC	2 cut(s)	105, 338
BspCNI	CTCAG	4 cut(s)	48, 215, 376, 378
BspLI	GGNNCC	4 cut(s)	139, 140, 228, 229
BspOI	GCTAGC	1 cut(s)	329
BspPI	GGATC	1 cut(s)	47
BspQI	GCTCTTC	1 cut(s)	18
BsrFI	RCCGGY	1 cut(s)	89
BssAI	RCCGGY	1 cut(s)	89
BssECI	CCNNGG	1 cut(s)	339
BssMI	GATC	1 cut(s)	39
BssT1I	CCWWGG	1 cut(s)	339
Bst2UI	CCWGG	1 cut(s)	52
Bst6I	CTCTTC	1 cut(s)	18
BstC8I	GCNNGC	2 cut(s)	91, 327
BstDEI	CTNAG	4 cut(s)	35, 202, 363, 386
BstDSI	CCRYGG	1 cut(s)	339
BstF5I	GGATG	2 cut(s)	201, 349
BstKTI	GATC	1 cut(s)	42
BstMAI	GTCTC	1 cut(s)	123
BstMBI	GATC	1 cut(s)	39
BstMWI	GCNNNNNNNGC	2 cut(s)	335, 382
BstNI	CCWGG	1 cut(s)	52
BstNSI	RCATGY	1 cut(s)	262
BstSCI	CCNGG	2 cut(s)	50, 72
BstSLI	GKGCMC	1 cut(s)	85
BsuRI	GGCC	2 cut(s)	105, 338
BtgI	CCRYGG	1 cut(s)	339
BtsCI	GGATG	2 cut(s)	201, 349
BtsI	GCAGTG	1 cut(s)	143
BtsIMutI	CAGTG	2 cut(s)	143, 210
Cac8I	GCNNGC	2 cut(s)	91, 327
Cfr10I	RCCGGY	1 cut(s)	89
Cfr13I	GGNCC	4 cut(s)	103, 125, 138, 227
CviAII	CATG	2 cut(s)	259, 340
DdeI	CTNAG	4 cut(s)	35, 202, 363, 386
DpnI	GATC	1 cut(s)	41
DpnII	GATC	1 cut(s)	39
EaeI	YGGCCR	1 cut(s)	336
Eam1104I	CTCTTC	1 cut(s)	18
EarI	CTCTTC	1 cut(s)	18
Ecl136II	GAGCTC	1 cut(s)	201
Eco130I	CCWWGG	1 cut(s)	339
Eco24I	GRGCYC	1 cut(s)	203
Eco47I	GGWCC	3 cut(s)	125, 138, 227
Eco53kI	GAGCTC	1 cut(s)	201
EcoICRI	GAGCTC	1 cut(s)	201
EcoO109I	RGGNCCY	2 cut(s)	138, 227
EcoRII	CCWGG	1 cut(s)	50
EcoT14I	CCWWGG	1 cut(s)	339
EcoT38I	GRGCYC	1 cut(s)	203
ErhI	CCWWGG	1 cut(s)	339
Esp3I	CGTCTC	1 cut(s)	123
FaeI	CATG	2 cut(s)	262, 343
FaiI	YATR	4 cut(s)	260, 314, 341, 435
FaqI	GGGAC	2 cut(s)	124, 240
FatI	CATG	2 cut(s)	258, 339
Fnu4HI	GCNGC	1 cut(s)	336
FokI	GGATG	2 cut(s)	208, 356
FriOI	GRGCYC	1 cut(s)	203
Fsp4HI	GCNGC	1 cut(s)	336
FspBI	CTAG	3 cut(s)	161, 279, 326
GluI	GCNGC	1 cut(s)	336
HaeIII	GGCC	2 cut(s)	105, 338
HapII	CCGG	2 cut(s)	73, 90
Hin1II	CATG	2 cut(s)	262, 343
HpaII	CCGG	2 cut(s)	73, 90
Hpy166II	GTNNAC	1 cut(s)	83
Hpy188I	TCNGA	2 cut(s)	170, 366
Hpy188III	TCNNGA	2 cut(s)	37, 161
Hpy8I	GTNNAC	1 cut(s)	83
Hpy99I	CGWCG	1 cut(s)	305
HpyAV	CCTTC	3 cut(s)	288, 349, 392
HpyCH4V	TGCA	1 cut(s)	83
HpyF10VI	GCNNNNNNNGC	2 cut(s)	335, 382
HpyF3I	CTNAG	4 cut(s)	35, 202, 363, 386
Hsp92II	CATG	2 cut(s)	262, 343
KflI	GGGWCCC	2 cut(s)	138, 227
KroI	GCCGGC	1 cut(s)	89
KroNI	GCCGGC	1 cut(s)	91
Kzo9I	GATC	1 cut(s)	39
LguI	GCTCTTC	1 cut(s)	18
LmnI	GCTCC	3 cut(s)	239, 322, 390
LpnPI	CCDG	8 cut(s)	22, 37, 64, 86, 103, 228, 269, 276
MaeI	CTAG	3 cut(s)	161, 279, 326
MalI	GATC	1 cut(s)	41
MboI	GATC	1 cut(s)	39
MboII	GAAGA	1 cut(s)	35
MhlI	GDGCHC	2 cut(s)	85, 203
MluCI	AATT	1 cut(s)	111
MnlI	CCTC	3 cut(s)	300, 381, 401
MroNI	GCCGGC	1 cut(s)	89
MseI	TTAA	1 cut(s)	56
MspI	CCGG	2 cut(s)	73, 90
MspR9I	CCNGG	2 cut(s)	52, 74
MvaI	CCWGG	1 cut(s)	52
MwoI	GCNNNNNNNGC	2 cut(s)	335, 382
NaeI	GCCGGC	1 cut(s)	91
NciI	CCSGG	1 cut(s)	74
NcoI	CCATGG	1 cut(s)	339
NdeII	GATC	1 cut(s)	39
NgoMIV	GCCGGC	1 cut(s)	89
NheI	GCTAGC	1 cut(s)	325
NlaIII	CATG	2 cut(s)	262, 343
NlaIV	GGNNCC	4 cut(s)	139, 140, 228, 229
NmeAIII	GCCGAG	1 cut(s)	174
NspI	RCATGY	1 cut(s)	262
PciSI	GCTCTTC	1 cut(s)	18
PdiI	GCCGGC	1 cut(s)	91
PkrI	GCNGC	1 cut(s)	337
PpuMI	RGGWCCY	2 cut(s)	138, 227
Psp124BI	GAGCTC	1 cut(s)	203
Psp5II	RGGWCCY	2 cut(s)	138, 227
Psp6I	CCWGG	1 cut(s)	50
PspGI	CCWGG	1 cut(s)	50
PspN4I	GGNNCC	4 cut(s)	139, 140, 228, 229
PspPI	GGNCC	4 cut(s)	103, 125, 138, 227
PspPPI	RGGWCCY	2 cut(s)	138, 227
SacI	GAGCTC	1 cut(s)	203
SapI	GCTCTTC	1 cut(s)	18
SaqAI	TTAA	1 cut(s)	56
SatI	GCNGC	1 cut(s)	336
Sau3AI	GATC	1 cut(s)	39
Sau96I	GGNCC	4 cut(s)	103, 125, 138, 227
ScrFI	CCNGG	2 cut(s)	52, 74
SduI	GDGCHC	2 cut(s)	85, 203
SetI	ASST	9 cut(s)	160, 203, 327, 331, 351, 360, 395, 403, 412
SinI	GGWCC	3 cut(s)	125, 138, 227
Sse9I	AATT	1 cut(s)	111
SsiI	CCGC	1 cut(s)	335
SspI	AATATT	1 cut(s)	13
SspMI	CTAG	3 cut(s)	161, 279, 326
SstI	GAGCTC	1 cut(s)	203
StyD4I	CCNGG	2 cut(s)	50, 72
StyI	CCWWGG	1 cut(s)	339
TaqI	TCGA	2 cut(s)	42, 300
TasI	AATT	1 cut(s)	111
TauI	GCSGC	1 cut(s)	338
Tru1I	TTAA	1 cut(s)	56
Tru9I	TTAA	1 cut(s)	56
TscAI	CASTG	2 cut(s)	150, 210
TspRI	CASTG	2 cut(s)	150, 210
VneI	GTGCAC	1 cut(s)	81
VpaK11BI	GGWCC	3 cut(s)	125, 138, 227
XbaI	TCTAGA	1 cut(s)	160
XceI	RCATGY	1 cut(s)	262
XspI	CTAG	3 cut(s)	161, 279, 326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.