VQ motif
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g12720 |
| prunus_persica | Prupe.4G116000_v2.0.a1 |
| pyrus_communis | pycom10g19230 |
| rosa_chinensis | RchiOBHm_Chr5g0020711 |
| rosa_laevigata | RLG00000001170 RLG00000001264 RLG00000015227 RLG00000032555 |
| rosa_multiflora | Rmu_sc0002527.1_g000001 Rmu_ssc0000162.1_g000028 |
| rosa_roxburghii | Rroxscaffold_1G00057590 |
| rosa_rugosa | Rorug05G0062600 |
| rosa_samantha | Rh5AG152300 Rh5BG152000 Rh5CG163500 Rh5CG532100 Rh5DG151500 |
| rosa_wichuraiana | Rw5G013500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 234 |
| AciI | CCGC | 4 cut(s) | 55, 113, 186, 225 |
| AclI | AACGTT | 1 cut(s) | 180 |
| AclWI | GGATC | 1 cut(s) | 285 |
| AfaI | GTAC | 1 cut(s) | 243 |
| AluBI | AGCT | 3 cut(s) | 124, 142, 293 |
| AluI | AGCT | 3 cut(s) | 124, 142, 293 |
| AlwI | GGATC | 1 cut(s) | 285 |
| ApeKI | GCWGC | 5 cut(s) | 52, 64, 67, 115, 222 |
| AspLEI | GCGC | 1 cut(s) | 64 |
| BbvI | GCAGC | 5 cut(s) | 64, 76, 79, 102, 234 |
| BccI | CCATC | 1 cut(s) | 257 |
| BciVI | GTATCC | 1 cut(s) | 177 |
| BfmI | CTRYAG | 1 cut(s) | 119 |
| BfuI | GTATCC | 1 cut(s) | 177 |
| BisI | GCNGC | 5 cut(s) | 53, 65, 68, 116, 223 |
| BlsI | GCNGC | 5 cut(s) | 54, 66, 69, 117, 224 |
| BmsI | GCATC | 1 cut(s) | 163 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 305 |
| BsaWI | WCCGGW | 1 cut(s) | 323 |
| Bse1I | ACTGG | 1 cut(s) | 34 |
| BseGI | GGATG | 1 cut(s) | 268 |
| BseNI | ACTGG | 1 cut(s) | 34 |
| BseXI | GCAGC | 5 cut(s) | 64, 76, 79, 102, 234 |
| BsiSI | CCGG | 1 cut(s) | 324 |
| Bsp143I | GATC | 1 cut(s) | 277 |
| BspACI | CCGC | 4 cut(s) | 55, 113, 186, 225 |
| BspPI | GGATC | 1 cut(s) | 285 |
| BsrI | ACTGG | 1 cut(s) | 34 |
| BssMI | GATC | 1 cut(s) | 277 |
| Bst4CI | ACNGT | 1 cut(s) | 48 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 49 |
| BstF5I | GGATG | 1 cut(s) | 268 |
| BstHHI | GCGC | 1 cut(s) | 64 |
| BstKTI | GATC | 1 cut(s) | 280 |
| BstMBI | GATC | 1 cut(s) | 277 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 49, 61, 121 |
| BstNSI | RCATGY | 1 cut(s) | 166 |
| BstSFI | CTRYAG | 1 cut(s) | 119 |
| BstV1I | GCAGC | 5 cut(s) | 64, 76, 79, 102, 234 |
| BsuI | GTATCC | 1 cut(s) | 177 |
| BtsCI | GGATG | 1 cut(s) | 268 |
| CfoI | GCGC | 1 cut(s) | 64 |
| Csp6I | GTAC | 1 cut(s) | 242 |
| CviAII | CATG | 2 cut(s) | 163, 274 |
| CviJI | RGCY | 4 cut(s) | 70, 124, 142, 293 |
| CviKI_1 | RGCY | 4 cut(s) | 70, 124, 142, 293 |
| CviQI | GTAC | 1 cut(s) | 242 |
| DpnI | GATC | 1 cut(s) | 279 |
| DpnII | GATC | 1 cut(s) | 277 |
| FaeI | CATG | 2 cut(s) | 166, 277 |
| FaiI | YATR | 6 cut(s) | 27, 164, 234, 275, 290, 300 |
| FatI | CATG | 2 cut(s) | 162, 273 |
| Fnu4HI | GCNGC | 5 cut(s) | 53, 65, 68, 116, 223 |
| FokI | GGATG | 1 cut(s) | 275 |
| Fsp4HI | GCNGC | 5 cut(s) | 53, 65, 68, 116, 223 |
| GlaI | GCGC | 1 cut(s) | 63 |
| GluI | GCNGC | 5 cut(s) | 53, 65, 68, 116, 223 |
| HapII | CCGG | 1 cut(s) | 324 |
| HhaI | GCGC | 1 cut(s) | 64 |
| Hin1II | CATG | 2 cut(s) | 166, 277 |
| Hin6I | GCGC | 1 cut(s) | 62 |
| HinP1I | GCGC | 1 cut(s) | 62 |
| HpaII | CCGG | 1 cut(s) | 324 |
| Hpy188I | TCNGA | 1 cut(s) | 171 |
| Hpy188III | TCNNGA | 2 cut(s) | 149, 281 |
| Hpy99I | CGWCG | 1 cut(s) | 220 |
| HpyCH4III | ACNGT | 1 cut(s) | 48 |
| HpyCH4IV | ACGT | 1 cut(s) | 180 |
| HpyCH4V | TGCA | 1 cut(s) | 52 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 49, 61, 121 |
| HpySE526I | ACGT | 1 cut(s) | 180 |
| Hsp92II | CATG | 2 cut(s) | 166, 277 |
| HspAI | GCGC | 1 cut(s) | 62 |
| Kzo9I | GATC | 1 cut(s) | 277 |
| LpnPI | CCDG | 3 cut(s) | 47, 266, 294 |
| Lsp1109I | GCAGC | 5 cut(s) | 64, 76, 79, 102, 234 |
| LweI | GCATC | 1 cut(s) | 163 |
| MaeII | ACGT | 1 cut(s) | 180 |
| MaeIII | GTNAC | 1 cut(s) | 194 |
| MalI | GATC | 1 cut(s) | 279 |
| MboI | GATC | 1 cut(s) | 277 |
| MboII | GAAGA | 1 cut(s) | 296 |
| MluCI | AATT | 3 cut(s) | 77, 229, 235 |
| MnlI | CCTC | 1 cut(s) | 247 |
| MspA1I | CMGCKG | 3 cut(s) | 55, 115, 225 |
| MspI | CCGG | 1 cut(s) | 324 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 49, 61, 121 |
| NdeII | GATC | 1 cut(s) | 277 |
| NlaIII | CATG | 2 cut(s) | 166, 277 |
| NspI | RCATGY | 1 cut(s) | 166 |
| PkrI | GCNGC | 5 cut(s) | 54, 66, 69, 117, 224 |
| PsiI | TTATAA | 1 cut(s) | 234 |
| Psp1406I | AACGTT | 1 cut(s) | 180 |
| RsaI | GTAC | 1 cut(s) | 243 |
| RsaNI | GTAC | 1 cut(s) | 242 |
| SatI | GCNGC | 5 cut(s) | 53, 65, 68, 116, 223 |
| Sau3AI | GATC | 1 cut(s) | 277 |
| SetI | ASST | 6 cut(s) | 10, 126, 144, 183, 258, 295 |
| SfaNI | GCATC | 1 cut(s) | 163 |
| SfcI | CTRYAG | 1 cut(s) | 119 |
| Sse9I | AATT | 3 cut(s) | 77, 229, 235 |
| SsiI | CCGC | 4 cut(s) | 55, 113, 186, 225 |
| TaaI | ACNGT | 1 cut(s) | 48 |
| TaiI | ACGT | 1 cut(s) | 183 |
| TaqI | TCGA | 3 cut(s) | 106, 218, 252 |
| TasI | AATT | 3 cut(s) | 77, 229, 235 |
| TseI | GCWGC | 5 cut(s) | 52, 64, 67, 115, 222 |
| TspDTI | ATGAA | 2 cut(s) | 134, 315 |
| XceI | RCATGY | 1 cut(s) | 166 |