Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0013637

Physical Location & Seq

Genomic Coordinates Reverse (-)

79539154 .. 79545414

Gene Structure 6261 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00057590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGAATGGAGGAGGGATCATTTCATCAGATTCAACTGGTGTGACAACAAGTAGTAGTGCTGTTGTGACTGATCAGAGCTTCATCAGTACCAGCCCCAATAATGGAGGTCAGCTAACTCCTACCGGAAGTGTAGCGAAACCAATCCGGCGGAGGTCTAGGGTTTCCAAGAAGACCCCTATCACTCTCCTTAACGCCAACGCCAACAACTTTCGAGCTTTGGTTCAACAATTCACAGGTTGTGCCGCTTCTAGCACGCCCATTTCGTTCGGTAACCAAAAGGGTCCGATCAATCTGAGTTTCGGAGTCAATAGTGCAGGACGAGTTAGACCGGGTTTGTGCACTTGCCGACAAGTTCTTGGGCCACCCAATTTCGTCTCTTGGTCCATCAATGGGGCCGCCACCGCCGAGTTCAGCTCTAGAACTCGAGTTGGGAACAATGGGTTCGGTGGGATGAGCTCGGTGGCTACAACAATGCCATGGGGACCCGATTTTGGAGTGGGACTTGGGGGTGGCATGTCTATTGTGGCTCACACTAGGCCGGTGGCGGGAGGACTCGACAAGAGGACTATGTTTTTGGAGCTAGCTTTGGCGGCCATGGATGAGCTTGTGAAGGTGGCTCGTACTAATGAGCCACTTTGGTCGAGGAGCTTGGAAGGTGGGAGAGAGCCTCCTAGTGACTCCGTGAGAAGATTGGTATGCGAGGAACTTCGCTATCAATTTGGCTGCGTGGATTCGGGGAAGGTCAAGGTCTGCACCGTCTGCTATCACCCGGAAGGTCTACAGCGCCTTTATCCGACGTGGAGGACAACACCACCACTGTGGTACACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009628 GO:0009653 GO:0009664 GO:0009791 GO:0009827 GO:0009888 GO:0009889 GO:0009908 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0022622 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042335 GO:0042545 GO:0043473 GO:0043476 GO:0043478 GO:0043479 GO:0043480 GO:0043481 GO:0045229 GO:0045595 GO:0045596 GO:0048364 GO:0048367 GO:0048437 GO:0048468 GO:0048469 GO:0048497 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071554 GO:0071555 GO:0071669 GO:0071695 GO:0071840 GO:0080090 GO:0090558 GO:0090567 GO:0090627 GO:0090700 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

276

Amino Acids

29.32

Weight (kDa)

9.82

Isoelectric Point (pI)

42.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VQ	PF05678	61 - 82	3e-07	VQ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013637)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g12720
prunus_persica	Prupe.4G116000_v2.0.a1
pyrus_communis	pycom10g19230
rosa_chinensis	RchiOBHm_Chr5g0020711
rosa_laevigata	RLG00000001170 RLG00000001264 RLG00000015227 RLG00000032555
rosa_multiflora	Rmu_sc0002527.1_g000001 Rmu_ssc0000162.1_g000028
rosa_roxburghii	Rroxscaffold_1G00057590
rosa_rugosa	Rorug05G0062600
rosa_samantha	Rh5AG152300 Rh5BG152000 Rh5CG163500 Rh5CG532100 Rh5DG151500
rosa_wichuraiana	Rw5G013500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	778
AciI	CCGC	6 cut(s)	148, 243, 396, 402, 545, 590
AclWI	GGATC	1 cut(s)	23
AcoI	YGGCCR	1 cut(s)	591
AfaI	GTAC	3 cut(s)	88, 622, 824
AfiI	CCNNNNNNNGG	4 cut(s)	101, 390, 491, 545
AgsI	TTSAA	2 cut(s)	33, 224
AjiI	CACGTC	1 cut(s)	798
AleI	CACNNNNGTG	1 cut(s)	817
AluBI	AGCT	9 cut(s)	78, 112, 215, 414, 456, 580, 584, 604, 648
AluI	AGCT	9 cut(s)	78, 112, 215, 414, 456, 580, 584, 604, 648
Alw21I	GWGCWC	2 cut(s)	341, 458
Alw26I	GTCTC	1 cut(s)	379
Alw44I	GTGCAC	1 cut(s)	337
AlwI	GGATC	1 cut(s)	23
Ama87I	CYCGRG	1 cut(s)	423
AoxI	GGCC	4 cut(s)	359, 393, 536, 591
ApaLI	GTGCAC	1 cut(s)	337
ApeKI	GCWGC	1 cut(s)	723
ArsI	GACNNNNNNTTYG	2 cut(s)	556, 588
AspLEI	GCGC	1 cut(s)	786
AspS9I	GGNCC	5 cut(s)	281, 359, 381, 393, 482
AsuC2I	CCSGG	2 cut(s)	330, 770
AsuHPI	GGTGA	1 cut(s)	758
AsuNHI	GCTAGC	1 cut(s)	580
AvaI	CYCGRG	1 cut(s)	423
AvaII	GGWCC	3 cut(s)	281, 381, 482
BaeGI	GKGCMC	1 cut(s)	341
BanII	GRGCYC	1 cut(s)	458
BbsI	GAAGAC	1 cut(s)	176
Bbv12I	GWGCWC	2 cut(s)	341, 458
BbvI	GCAGC	1 cut(s)	710
BccI	CCATC	1 cut(s)	392
BclI	TGATCA	1 cut(s)	70
BcnI	CCSGG	2 cut(s)	330, 770
BcoDI	GTCTC	1 cut(s)	379
BfaI	CTAG	6 cut(s)	156, 249, 417, 534, 581, 672
BfmI	CTRYAG	1 cut(s)	779
BfoI	RGCGCY	1 cut(s)	787
BisI	GCNGC	4 cut(s)	243, 396, 591, 724
BlsI	GCNGC	4 cut(s)	244, 397, 592, 725
Bme1390I	CCNGG	2 cut(s)	330, 770
Bme18I	GGWCC	3 cut(s)	281, 381, 482
BmeT110I	CYCGRG	1 cut(s)	423
BmgBI	CACGTC	1 cut(s)	798
BmgT120I	GGNCC	5 cut(s)	281, 359, 381, 393, 482
BmiI	GGNNCC	4 cut(s)	282, 394, 483, 484
BmrFI	CCNGG	2 cut(s)	330, 770
BmtI	GCTAGC	1 cut(s)	584
BpiI	GAAGAC	1 cut(s)	176
BplI	GAGNNNNNCTC	4 cut(s)	398, 430, 652, 684
BpuMI	CCSGG	2 cut(s)	330, 770
BsaJI	CCNNGG	2 cut(s)	476, 594
BsaWI	WCCGGW	1 cut(s)	122
Bsc4I	CCNNNNNNNGG	4 cut(s)	101, 390, 491, 545
Bse118I	RCCGGY	1 cut(s)	538
Bse1I	ACTGG	1 cut(s)	40
BseDI	CCNNGG	2 cut(s)	476, 594
BseGI	GGATG	2 cut(s)	456, 604
BseLI	CCNNNNNNNGG	4 cut(s)	101, 390, 491, 545
BseMII	CTCAG	1 cut(s)	284
BseNI	ACTGG	1 cut(s)	40
BseRI	GAGGAG	2 cut(s)	24, 658
BseSI	GKGCMC	1 cut(s)	341
BseXI	GCAGC	1 cut(s)	710
BsgI	GTGCAG	2 cut(s)	333, 736
BshFI	GGCC	4 cut(s)	361, 395, 538, 593
BsiHKAI	GWGCWC	2 cut(s)	341, 458
BsiHKCI	CYCGRG	1 cut(s)	423
BsiSI	CCGG	5 cut(s)	123, 145, 329, 539, 770
BslFI	GGGAC	2 cut(s)	495, 513
BslI	CCNNNNNNNGG	4 cut(s)	101, 390, 491, 545
BsmAI	GTCTC	1 cut(s)	379
BsmBI	CGTCTC	1 cut(s)	379
BsmFI	GGGAC	2 cut(s)	495, 513
BsnI	GGCC	4 cut(s)	361, 395, 538, 593
BsoBI	CYCGRG	1 cut(s)	423
Bsp1286I	GDGCHC	2 cut(s)	341, 458
Bsp143I	GATC	3 cut(s)	15, 70, 285
Bsp19I	CCATGG	2 cut(s)	476, 594
BspACI	CCGC	6 cut(s)	148, 243, 396, 402, 545, 590
BspANI	GGCC	4 cut(s)	361, 395, 538, 593
BspCNI	CTCAG	1 cut(s)	285
BspLI	GGNNCC	4 cut(s)	282, 394, 483, 484
BspOI	GCTAGC	1 cut(s)	584
BspPI	GGATC	1 cut(s)	23
BsrFI	RCCGGY	1 cut(s)	538
BsrI	ACTGG	1 cut(s)	40
BssAI	RCCGGY	1 cut(s)	538
BssECI	CCNNGG	2 cut(s)	476, 594
BssMI	GATC	3 cut(s)	15, 70, 285
BssT1I	CCWWGG	2 cut(s)	476, 594
Bst4CI	ACNGT	2 cut(s)	757, 819
BstAPI	GCANNNNNTGC	1 cut(s)	759
BstC8I	GCNNGC	2 cut(s)	254, 582
BstDEI	CTNAG	1 cut(s)	293
BstDSI	CCRYGG	2 cut(s)	476, 594
BstEII	GGTNACC	1 cut(s)	269
BstF5I	GGATG	2 cut(s)	456, 604
BstH2I	RGCGCY	1 cut(s)	787
BstHHI	GCGC	1 cut(s)	786
BstKTI	GATC	3 cut(s)	18, 73, 288
BstMAI	GTCTC	1 cut(s)	379
BstMBI	GATC	3 cut(s)	15, 70, 285
BstMWI	GCNNNNNNNGC	3 cut(s)	401, 590, 759
BstNSI	RCATGY	1 cut(s)	517
BstPI	GGTNACC	1 cut(s)	269
BstSCI	CCNGG	2 cut(s)	328, 768
BstSFI	CTRYAG	1 cut(s)	779
BstSLI	GKGCMC	1 cut(s)	341
BstV1I	GCAGC	1 cut(s)	710
BstV2I	GAAGAC	1 cut(s)	176
BstXI	CCANNNNNNTGG	1 cut(s)	819
BsuRI	GGCC	4 cut(s)	361, 395, 538, 593
BtgI	CCRYGG	2 cut(s)	476, 594
BtrI	CACGTC	1 cut(s)	798
BtsCI	GGATG	2 cut(s)	456, 604
BtsIMutI	CAGTG	1 cut(s)	815
Cac8I	GCNNGC	2 cut(s)	254, 582
CfoI	GCGC	1 cut(s)	786
Cfr10I	RCCGGY	1 cut(s)	538
Cfr13I	GGNCC	5 cut(s)	281, 359, 381, 393, 482
Csp6I	GTAC	3 cut(s)	87, 621, 823
CviAII	CATG	3 cut(s)	477, 514, 595
CviQI	GTAC	3 cut(s)	87, 621, 823
DdeI	CTNAG	1 cut(s)	293
DpnI	GATC	3 cut(s)	17, 72, 287
DpnII	GATC	3 cut(s)	15, 70, 285
EaeI	YGGCCR	1 cut(s)	591
EciI	GGCGGA	1 cut(s)	163
Ecl136II	GAGCTC	1 cut(s)	456
Eco130I	CCWWGG	2 cut(s)	476, 594
Eco24I	GRGCYC	1 cut(s)	458
Eco47I	GGWCC	3 cut(s)	281, 381, 482
Eco53kI	GAGCTC	1 cut(s)	456
Eco88I	CYCGRG	1 cut(s)	423
Eco91I	GGTNACC	1 cut(s)	269
EcoICRI	GAGCTC	1 cut(s)	456
EcoO109I	RGGNCCY	1 cut(s)	482
EcoO65I	GGTNACC	1 cut(s)	269
EcoT14I	CCWWGG	2 cut(s)	476, 594
EcoT38I	GRGCYC	1 cut(s)	458
ErhI	CCWWGG	2 cut(s)	476, 594
Esp3I	CGTCTC	1 cut(s)	379
FaeI	CATG	3 cut(s)	480, 517, 598
FaiI	YATR	6 cut(s)	478, 515, 569, 596, 697, 829
FaqI	GGGAC	2 cut(s)	495, 513
FatI	CATG	3 cut(s)	476, 513, 594
FauI	CCCGC	1 cut(s)	538
FbaI	TGATCA	1 cut(s)	70
FblI	GTMKAC	1 cut(s)	778
Fnu4HI	GCNGC	4 cut(s)	243, 396, 591, 724
FokI	GGATG	2 cut(s)	463, 611
FriOI	GRGCYC	1 cut(s)	458
Fsp4HI	GCNGC	4 cut(s)	243, 396, 591, 724
FspBI	CTAG	6 cut(s)	156, 249, 417, 534, 581, 672
GlaI	GCGC	1 cut(s)	785
GluI	GCNGC	4 cut(s)	243, 396, 591, 724
HaeII	RGCGCY	1 cut(s)	787
HaeIII	GGCC	4 cut(s)	361, 395, 538, 593
HapII	CCGG	5 cut(s)	123, 145, 329, 539, 770
HhaI	GCGC	1 cut(s)	786
Hin1II	CATG	3 cut(s)	480, 517, 598
Hin6I	GCGC	1 cut(s)	784
HinP1I	GCGC	1 cut(s)	784
HinfI	GANTC	5 cut(s)	29, 303, 552, 677, 731
HpaII	CCGG	5 cut(s)	123, 145, 329, 539, 770
HphI	GGTGA	1 cut(s)	758
Hpy166II	GTNNAC	3 cut(s)	339, 779, 825
Hpy188I	TCNGA	6 cut(s)	28, 75, 285, 294, 302, 795
Hpy188III	TCNNGA	1 cut(s)	417
Hpy8I	GTNNAC	3 cut(s)	339, 779, 825
Hpy99I	CGWCG	1 cut(s)	799
HpyAV	CCTTC	4 cut(s)	604, 647, 733, 767
HpyCH4III	ACNGT	2 cut(s)	757, 819
HpyCH4IV	ACGT	1 cut(s)	797
HpyCH4V	TGCA	3 cut(s)	314, 339, 753
HpyF10VI	GCNNNNNNNGC	3 cut(s)	401, 590, 759
HpyF3I	CTNAG	1 cut(s)	293
HpySE526I	ACGT	1 cut(s)	797
Hsp92II	CATG	3 cut(s)	480, 517, 598
HspAI	GCGC	1 cut(s)	784
KflI	GGGWCCC	1 cut(s)	482
Ksp22I	TGATCA	1 cut(s)	70
Kzo9I	GATC	3 cut(s)	15, 70, 285
LmnI	GCTCC	2 cut(s)	577, 645
LpnPI	CCDG	9 cut(s)	21, 103, 136, 158, 219, 300, 342, 552, 783
Lsp1109I	GCAGC	1 cut(s)	710
MaeI	CTAG	6 cut(s)	156, 249, 417, 534, 581, 672
MaeII	ACGT	1 cut(s)	797
MaeIII	GTNAC	4 cut(s)	40, 64, 269, 674
MalI	GATC	3 cut(s)	17, 72, 287
MboI	GATC	3 cut(s)	15, 70, 285
MboII	GAAGA	2 cut(s)	181, 699
MhlI	GDGCHC	2 cut(s)	341, 458
MluCI	AATT	3 cut(s)	227, 367, 716
MlyI	GAGTC	3 cut(s)	312, 546, 671
MmeI	TCCRAC	1 cut(s)	818
MnlI	CCTC	9 cut(s)	5, 98, 144, 542, 555, 636, 678, 694, 795
MseI	TTAA	1 cut(s)	189
MslI	CAYNNNNRTG	1 cut(s)	817
MspI	CCGG	5 cut(s)	123, 145, 329, 539, 770
MspR9I	CCNGG	2 cut(s)	330, 770
MwoI	GCNNNNNNNGC	3 cut(s)	401, 590, 759
NciI	CCSGG	2 cut(s)	330, 770
NcoI	CCATGG	2 cut(s)	476, 594
NdeII	GATC	3 cut(s)	15, 70, 285
NheI	GCTAGC	1 cut(s)	580
NlaIII	CATG	3 cut(s)	480, 517, 598
NlaIV	GGNNCC	4 cut(s)	282, 394, 483, 484
NmeAIII	GCCGAG	1 cut(s)	430
NmuCI	GTSAC	3 cut(s)	40, 64, 674
NspI	RCATGY	1 cut(s)	517
OliI	CACNNNNGTG	1 cut(s)	817
PaeR7I	CTCGAG	1 cut(s)	423
PcsI	WCGNNNNNNNCGW	1 cut(s)	260
PfeI	GAWTC	2 cut(s)	29, 731
PkrI	GCNGC	4 cut(s)	244, 397, 592, 725
PleI	GAGTC	3 cut(s)	311, 546, 671
PpsI	GAGTC	3 cut(s)	311, 546, 671
PpuMI	RGGWCCY	1 cut(s)	482
Psp124BI	GAGCTC	1 cut(s)	458
Psp5II	RGGWCCY	1 cut(s)	482
PspEI	GGTNACC	1 cut(s)	269
PspN4I	GGNNCC	4 cut(s)	282, 394, 483, 484
PspPI	GGNCC	5 cut(s)	281, 359, 381, 393, 482
PspPPI	RGGWCCY	1 cut(s)	482
PspXI	VCTCGAGB	1 cut(s)	423
RsaI	GTAC	3 cut(s)	88, 622, 824
RsaNI	GTAC	3 cut(s)	87, 621, 823
RseI	CAYNNNNRTG	1 cut(s)	817
SacI	GAGCTC	1 cut(s)	458
SaqAI	TTAA	1 cut(s)	189
SatI	GCNGC	4 cut(s)	243, 396, 591, 724
Sau3AI	GATC	3 cut(s)	15, 70, 285
Sau96I	GGNCC	5 cut(s)	281, 359, 381, 393, 482
SchI	GAGTC	3 cut(s)	312, 546, 671
ScrFI	CCNGG	2 cut(s)	330, 770
SduI	GDGCHC	2 cut(s)	341, 458
SfcI	CTRYAG	1 cut(s)	779
Sfr274I	CTCGAG	1 cut(s)	423
SinI	GGWCC	3 cut(s)	281, 381, 482
SlaI	CTCGAG	1 cut(s)	423
SmiMI	CAYNNNNRTG	1 cut(s)	817
SmlI	CTYRAG	1 cut(s)	423
SmoI	CTYRAG	1 cut(s)	423
Sse9I	AATT	3 cut(s)	227, 367, 716
SsiI	CCGC	6 cut(s)	148, 243, 396, 402, 545, 590
SspMI	CTAG	6 cut(s)	156, 249, 417, 534, 581, 672
SstI	GAGCTC	1 cut(s)	458
StyD4I	CCNGG	2 cut(s)	328, 768
StyI	CCWWGG	2 cut(s)	476, 594
TaaI	ACNGT	2 cut(s)	757, 819
TaiI	ACGT	1 cut(s)	800
TaqI	TCGA	4 cut(s)	211, 424, 555, 641
TasI	AATT	3 cut(s)	227, 367, 716
TauI	GCSGC	3 cut(s)	245, 398, 593
TfiI	GAWTC	2 cut(s)	29, 731
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TscAI	CASTG	1 cut(s)	822
TseFI	GTSAC	3 cut(s)	40, 64, 674
TseI	GCWGC	1 cut(s)	723
Tsp45I	GTSAC	3 cut(s)	40, 64, 674
TspDTI	ATGAA	3 cut(s)	12, 17, 70
TspGWI	ACGGA	1 cut(s)	670
TspRI	CASTG	1 cut(s)	822
VneI	GTGCAC	1 cut(s)	337
VpaK11BI	GGWCC	3 cut(s)	281, 381, 482
XbaI	TCTAGA	1 cut(s)	416
XceI	RCATGY	1 cut(s)	517
XhoI	CTCGAG	1 cut(s)	423
XmiI	GTMKAC	1 cut(s)	778
XspI	CTAG	6 cut(s)	156, 249, 417, 534, 581, 672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.