Rh5CG163500

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0013637
Physical Location & Seq
Forward (+)
15144635 .. 15146187
1553 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG163500.1

Sequence Viewer

Length: 783 bp
ATGGAGACAGAATATCAAGCTTTTATATACATCACAGTTCACAACAAAAAGAGACCATTGAAATTAATTAGCATTATGGTGCCTGGTTCTAATGAGTGGGAGCAATACTACCAGAAAAGCTTCACTGCAACTCCCATGAATGGAGGAGGGATCATTTCATCAGATTCAACTGGTGTGACAACAAGTAGTAGTGCTGTTGTGACTGATCAGAGCTTCATCAGTACCAGCCCCAATAATGGAGGTCAGCTAACTCCTACCGGAAGTGTAGCGAAACCAATCCGGCGGAGGTCTAGGGTTTCCAAGAAGACCCCCATCACTCTCCTGAACGCCAACGCCAACAACTTTCGAGCTTTGGTTCAACAATTCACAGGCTGTGCCGCTTCTAGCACGCCCATTTCTTTCGGCAACCAAAAGGGTCCGATCAATCTGAGTTTCGGAGTCAATAGTGCAGGTACTAGTTCTGTAGTTATGGCGCCTTTTGAAAATCCCAACTATAGTTACAACCAGCAGCAGCAGCAGCAACAATTGCAGCGGCTAGCGCAAGCACAGCAACAACAACGACACCCGCTACTGCAACTGCAAGAAAACCATGTCCAACTGCATCAAGAAGAGCAACAGCGTATGTACCCGTTTGATAATGTTAGTGGTAGTGACCATGTGTTTCATTATTCGTCGAATTCGAGTAGTTCTGGTTATAATCCTATGCAAGCTGGTATGGAGATCGGGGATGGGTTTGAGGTCATGGATCAGGAAGATATATCTTTACATGAATTGCTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

260

Amino Acids

28.74

Weight (kDa)

6.15

Isoelectric Point (pI)

51.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 106 - 127 2.8e-07 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 696
Acc36I ACCTGC 1 cut(s) 440
AccB1I GGYRCC 2 cut(s) 79, 472
AciI CCGC 4 cut(s) 283, 378, 532, 566
AclWI GGATC 2 cut(s) 158, 753
AcsI RAATTY 1 cut(s) 676
AcyI GRCGYC 1 cut(s) 473
AfaI GTAC 3 cut(s) 223, 454, 626
AfiI CCNNNNNNNGG 2 cut(s) 140, 236
AgsI TTSAA 4 cut(s) 61, 168, 359, 482
AhlI ACTAGT 1 cut(s) 455
AjnI CCWGG 1 cut(s) 82
AluBI AGCT 6 cut(s) 20, 120, 213, 247, 350, 710
AluI AGCT 6 cut(s) 20, 120, 213, 247, 350, 710
Alw26I GTCTC 1 cut(s) 46
AlwI GGATC 2 cut(s) 158, 753
ApeKI GCWGC 5 cut(s) 508, 511, 514, 517, 529
ApoI RAATTY 1 cut(s) 676
AseI ATTAAT 1 cut(s) 65
Asp700I GAANNNNTTC 1 cut(s) 119
AspLEI GCGC 2 cut(s) 475, 541
AspS9I GGNCC 1 cut(s) 416
AsuNHI GCTAGC 1 cut(s) 535
AvaII GGWCC 1 cut(s) 416
BanI GGYRCC 2 cut(s) 79, 472
BbsI GAAGAC 1 cut(s) 311
BbvI GCAGC 5 cut(s) 520, 523, 526, 529, 541
BccI CCATC 2 cut(s) 320, 722
BciT130I CCWGG 1 cut(s) 84
BclI TGATCA 1 cut(s) 205
BcoDI GTCTC 1 cut(s) 46
BcuI ACTAGT 1 cut(s) 455
BfaI CTAG 4 cut(s) 291, 384, 456, 536
BfmI CTRYAG 2 cut(s) 462, 493
BfoI RGCGCY 1 cut(s) 476
BfuAI ACCTGC 1 cut(s) 440
BisI GCNGC 7 cut(s) 378, 509, 512, 515, 518, 530, 533
BlsI GCNGC 7 cut(s) 379, 510, 513, 516, 519, 531, 534
Bme1390I CCNGG 1 cut(s) 84
Bme18I GGWCC 1 cut(s) 416
BmgT120I GGNCC 1 cut(s) 416
BmiI GGNNCC 3 cut(s) 81, 417, 474
BmrFI CCNGG 1 cut(s) 84
BmsI GCATC 1 cut(s) 610
BmtI GCTAGC 1 cut(s) 539
BpiI GAAGAC 1 cut(s) 311
BsaHI GRCGYC 1 cut(s) 473
BsaI GGTCTC 1 cut(s) 46
BsaWI WCCGGW 1 cut(s) 257
BsaXI ACNNNNNCTCC 2 cut(s) 115, 145
Bsc4I CCNNNNNNNGG 2 cut(s) 140, 236
Bse1I ACTGG 1 cut(s) 175
BseBI CCWGG 1 cut(s) 84
BseGI GGATG 1 cut(s) 733
BseLI CCNNNNNNNGG 2 cut(s) 140, 236
BseMII CTCAG 1 cut(s) 419
BseNI ACTGG 1 cut(s) 175
BseRI GAGGAG 1 cut(s) 159
BseXI GCAGC 5 cut(s) 520, 523, 526, 529, 541
BsgI GTGCAG 1 cut(s) 468
BshNI GGYRCC 2 cut(s) 79, 472
BsiSI CCGG 2 cut(s) 258, 280
BslI CCNNNNNNNGG 2 cut(s) 140, 236
BsmAI GTCTC 1 cut(s) 46
Bso31I GGTCTC 1 cut(s) 46
Bsp143I GATC 5 cut(s) 150, 205, 420, 720, 745
BspACI CCGC 4 cut(s) 283, 378, 532, 566
BspCNI CTCAG 1 cut(s) 420
BspLI GGNNCC 3 cut(s) 81, 417, 474
BspMI ACCTGC 1 cut(s) 440
BspOI GCTAGC 1 cut(s) 539
BspPI GGATC 2 cut(s) 158, 753
BspQI GCTCTTC 1 cut(s) 603
BspT107I GGYRCC 2 cut(s) 79, 472
BspTNI GGTCTC 1 cut(s) 46
BsrI ACTGG 1 cut(s) 175
BssMI GATC 5 cut(s) 150, 205, 420, 720, 745
BssNI GRCGYC 1 cut(s) 473
Bst2UI CCWGG 1 cut(s) 84
Bst4CI ACNGT 1 cut(s) 37
Bst6I CTCTTC 1 cut(s) 603
BstACI GRCGYC 1 cut(s) 473
BstAPI GCANNNNNTGC 1 cut(s) 526
BstC8I GCNNGC 4 cut(s) 389, 537, 543, 708
BstDEI CTNAG 1 cut(s) 428
BstF5I GGATG 1 cut(s) 733
BstH2I RGCGCY 1 cut(s) 476
BstHHI GCGC 2 cut(s) 475, 541
BstKTI GATC 5 cut(s) 153, 208, 423, 723, 748
BstMAI GTCTC 1 cut(s) 46
BstMBI GATC 5 cut(s) 150, 205, 420, 720, 745
BstMWI GCNNNNNNNGC 5 cut(s) 514, 517, 526, 538, 547
BstNI CCWGG 1 cut(s) 84
BstSCI CCNGG 1 cut(s) 82
BstSFI CTRYAG 2 cut(s) 462, 493
BstV1I GCAGC 5 cut(s) 520, 523, 526, 529, 541
BstV2I GAAGAC 1 cut(s) 311
BtsCI GGATG 1 cut(s) 733
BtsI GCAGTG 1 cut(s) 123
BtsIMutI CAGTG 1 cut(s) 123
BveI ACCTGC 1 cut(s) 440
Cac8I GCNNGC 4 cut(s) 389, 537, 543, 708
CfoI GCGC 2 cut(s) 475, 541
Cfr13I GGNCC 1 cut(s) 416
Csp6I GTAC 3 cut(s) 222, 453, 625
CviAII CATG 5 cut(s) 136, 590, 656, 742, 767
CviJI RGCY 9 cut(s) 20, 120, 213, 228, 247, 350, 372, 535, 710
CviKI_1 RGCY 9 cut(s) 20, 120, 213, 228, 247, 350, 372, 535, 710
CviQI GTAC 3 cut(s) 222, 453, 625
DdeI CTNAG 1 cut(s) 428
DinI GGCGCC 1 cut(s) 474
DpnI GATC 5 cut(s) 152, 207, 422, 722, 747
DpnII GATC 5 cut(s) 150, 205, 420, 720, 745
Eam1104I CTCTTC 1 cut(s) 603
EarI CTCTTC 1 cut(s) 603
EciI GGCGGA 1 cut(s) 298
Eco31I GGTCTC 1 cut(s) 46
Eco47I GGWCC 1 cut(s) 416
EcoRI GAATTC 1 cut(s) 676
EcoRII CCWGG 1 cut(s) 82
EgeI GGCGCC 1 cut(s) 474
EheI GGCGCC 1 cut(s) 474
FaeI CATG 5 cut(s) 139, 593, 659, 745, 770
FatI CATG 5 cut(s) 135, 589, 655, 741, 766
FauI CCCGC 1 cut(s) 573
FbaI TGATCA 1 cut(s) 205
Fnu4HI GCNGC 7 cut(s) 378, 509, 512, 515, 518, 530, 533
FokI GGATG 1 cut(s) 740
Fsp4HI GCNGC 7 cut(s) 378, 509, 512, 515, 518, 530, 533
FspBI CTAG 4 cut(s) 291, 384, 456, 536
GlaI GCGC 2 cut(s) 474, 540
GluI GCNGC 7 cut(s) 378, 509, 512, 515, 518, 530, 533
HaeII RGCGCY 1 cut(s) 476
HapII CCGG 2 cut(s) 258, 280
HhaI GCGC 2 cut(s) 475, 541
Hin1I GRCGYC 1 cut(s) 473
Hin1II CATG 5 cut(s) 139, 593, 659, 745, 770
Hin6I GCGC 2 cut(s) 473, 539
HinP1I GCGC 2 cut(s) 473, 539
HindIII AAGCTT 2 cut(s) 18, 118
HinfI GANTC 2 cut(s) 164, 438
HpaII CCGG 2 cut(s) 258, 280
Hpy166II GTNNAC 1 cut(s) 40
Hpy188I TCNGA 5 cut(s) 163, 210, 420, 429, 437
Hpy188III TCNNGA 3 cut(s) 322, 605, 749
Hpy8I GTNNAC 1 cut(s) 40
Hpy99I CGWCG 1 cut(s) 676
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4V TGCA 7 cut(s) 128, 449, 529, 574, 580, 601, 706
HpyF10VI GCNNNNNNNGC 5 cut(s) 514, 517, 526, 538, 547
HpyF3I CTNAG 1 cut(s) 428
Hsp92I GRCGYC 1 cut(s) 473
Hsp92II CATG 5 cut(s) 139, 593, 659, 745, 770
HspAI GCGC 2 cut(s) 473, 539
KasI GGCGCC 1 cut(s) 472
Ksp22I TGATCA 1 cut(s) 205
Kzo9I GATC 5 cut(s) 150, 205, 420, 720, 745
LguI GCTCTTC 1 cut(s) 603
LmnI GCTCC 1 cut(s) 100
Lsp1109I GCAGC 5 cut(s) 520, 523, 526, 529, 541
LweI GCATC 1 cut(s) 610
MaeI CTAG 4 cut(s) 291, 384, 456, 536
MaeIII GTNAC 4 cut(s) 175, 199, 497, 650
MalI GATC 5 cut(s) 152, 207, 422, 722, 747
MboI GATC 5 cut(s) 150, 205, 420, 720, 745
MboII GAAGA 3 cut(s) 316, 620, 764
MfeI CAATTG 1 cut(s) 524
MluCI AATT 6 cut(s) 62, 66, 362, 524, 676, 770
Mly113I GGCGCC 1 cut(s) 473
MlyI GAGTC 1 cut(s) 447
MmeI TCCRAC 1 cut(s) 619
MnlI CCTC 5 cut(s) 137, 140, 233, 279, 730
MroXI GAANNNNTTC 1 cut(s) 119
MseI TTAA 2 cut(s) 65, 781
MslI CAYNNNNRTG 1 cut(s) 77
MspA1I CMGCKG 1 cut(s) 532
MspI CCGG 2 cut(s) 258, 280
MspR9I CCNGG 1 cut(s) 84
MunI CAATTG 1 cut(s) 524
MvaI CCWGG 1 cut(s) 84
MwoI GCNNNNNNNGC 5 cut(s) 514, 517, 526, 538, 547
NarI GGCGCC 1 cut(s) 473
NdeII GATC 5 cut(s) 150, 205, 420, 720, 745
NheI GCTAGC 1 cut(s) 535
NlaIII CATG 5 cut(s) 139, 593, 659, 745, 770
NlaIV GGNNCC 3 cut(s) 81, 417, 474
NmuCI GTSAC 3 cut(s) 175, 199, 650
PciSI GCTCTTC 1 cut(s) 603
PcsI WCGNNNNNNNCGW 1 cut(s) 677
PdmI GAANNNNTTC 1 cut(s) 119
PfeI GAWTC 1 cut(s) 164
PkrI GCNGC 7 cut(s) 379, 510, 513, 516, 519, 531, 534
PleI GAGTC 1 cut(s) 446
PluTI GGCGCC 1 cut(s) 476
PpsI GAGTC 1 cut(s) 446
PshBI ATTAAT 1 cut(s) 65
PsiI TTATAA 1 cut(s) 696
Psp6I CCWGG 1 cut(s) 82
PspGI CCWGG 1 cut(s) 82
PspN4I GGNNCC 3 cut(s) 81, 417, 474
PspPI GGNCC 1 cut(s) 416
RsaI GTAC 3 cut(s) 223, 454, 626
RsaNI GTAC 3 cut(s) 222, 453, 625
RseI CAYNNNNRTG 1 cut(s) 77
SapI GCTCTTC 1 cut(s) 603
SaqAI TTAA 2 cut(s) 65, 781
SatI GCNGC 7 cut(s) 378, 509, 512, 515, 518, 530, 533
Sau3AI GATC 5 cut(s) 150, 205, 420, 720, 745
Sau96I GGNCC 1 cut(s) 416
SchI GAGTC 1 cut(s) 447
ScrFI CCNGG 1 cut(s) 84
SfaNI GCATC 1 cut(s) 610
SfcI CTRYAG 2 cut(s) 462, 493
SfoI GGCGCC 1 cut(s) 474
SinI GGWCC 1 cut(s) 416
SmiMI CAYNNNNRTG 1 cut(s) 77
SpeI ACTAGT 1 cut(s) 455
Sse9I AATT 6 cut(s) 62, 66, 362, 524, 676, 770
SsiI CCGC 4 cut(s) 283, 378, 532, 566
SspDI GGCGCC 1 cut(s) 472
SspMI CTAG 4 cut(s) 291, 384, 456, 536
StyD4I CCNGG 1 cut(s) 82
TaaI ACNGT 1 cut(s) 37
TaqI TCGA 3 cut(s) 346, 674, 680
TasI AATT 6 cut(s) 62, 66, 362, 524, 676, 770
TauI GCSGC 2 cut(s) 380, 535
TfiI GAWTC 1 cut(s) 164
Tru1I TTAA 2 cut(s) 65, 781
Tru9I TTAA 2 cut(s) 65, 781
TscAI CASTG 1 cut(s) 130
TseFI GTSAC 3 cut(s) 175, 199, 650
TseI GCWGC 5 cut(s) 508, 511, 514, 517, 529
Tsp45I GTSAC 3 cut(s) 175, 199, 650
TspDTI ATGAA 5 cut(s) 147, 152, 205, 653, 783
TspRI CASTG 1 cut(s) 130
VpaK11BI GGWCC 1 cut(s) 416
VspI ATTAAT 1 cut(s) 65
XapI RAATTY 1 cut(s) 676
XmnI GAANNNNTTC 1 cut(s) 119
XspI CTAG 4 cut(s) 291, 384, 456, 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.