Rmu_sc0002527.1_g000001

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002527.1
OG0013637
Physical Location & Seq
Forward (+)
11204 .. 12089
886 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002527.1_g000001.1.cds

Sequence Viewer

Length: 714 bp
atggtgcctggttctaatgagtgggagcaatactaccagaaaagcttcactgcaactcccatgaatggaggagggatcatttcatcagattcaactggtatgacaacaagtagtagtgctgttgtgactgatcagagcttcatcagtactagccccaataatggaggtcagctaactcctaccggaagtgtagcgaaaccaatccggcggaggtctagggtttccaagaagacccccatcactctcctgaacgccaacgccaacaactttcgagctttggttcaacaattcacaggctgtgccgcttctagcacgcccatttcgttcggcaaccaaaagggtccgatcaatctgagtttcggagtcaatagtgcaggtactagttctgtagttatggggccttttggaaatcccaactatagttacaaccagcagcagcagcaacaattgcagcggctagcgcaagcgcagcaagaacagcaacaacaacgacacccgctactgcaactgcaagaaaaccatgtccaactgcatcaagaagagcaacagcgtatgtacccgtttgataatgttagtggtagtgatcatgtgtttcattattcgtcgaattcgagtagttctggttataatcctatgcaagctggtatggagatcggggatgggtttgaggtcatggatcaggaagatatatctttacatgaattgcttgattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

237

Amino Acids

25.93

Weight (kDa)

5.63

Isoelectric Point (pI)

51.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 627
Acc36I ACCTGC 1 cut(s) 365
AccB1I GGYRCC 1 cut(s) 4
AciI CCGC 4 cut(s) 208, 303, 454, 497
AclWI GGATC 2 cut(s) 83, 684
AcsI RAATTY 1 cut(s) 607
AfaI GTAC 3 cut(s) 148, 379, 557
AfiI CCNNNNNNNGG 2 cut(s) 65, 161
AgsI TTSAA 2 cut(s) 93, 284
AhlI ACTAGT 1 cut(s) 380
AjnI CCWGG 1 cut(s) 7
AluBI AGCT 5 cut(s) 45, 138, 172, 275, 641
AluI AGCT 5 cut(s) 45, 138, 172, 275, 641
AlwI GGATC 2 cut(s) 83, 684
AoxI GGCC 1 cut(s) 398
ApeKI GCWGC 5 cut(s) 433, 436, 439, 451, 469
ApoI RAATTY 1 cut(s) 607
Asp700I GAANNNNTTC 1 cut(s) 44
AspLEI GCGC 2 cut(s) 463, 469
AspS9I GGNCC 2 cut(s) 341, 398
AsuNHI GCTAGC 1 cut(s) 457
AvaII GGWCC 1 cut(s) 341
BanI GGYRCC 1 cut(s) 4
BbsI GAAGAC 1 cut(s) 236
BbvI GCAGC 5 cut(s) 445, 448, 451, 463, 481
BccI CCATC 2 cut(s) 245, 653
BciT130I CCWGG 1 cut(s) 9
BclI TGATCA 2 cut(s) 130, 583
BcuI ACTAGT 1 cut(s) 380
BfaI CTAG 5 cut(s) 150, 216, 309, 381, 458
BfmI CTRYAG 2 cut(s) 387, 418
BfuAI ACCTGC 1 cut(s) 365
BisI GCNGC 7 cut(s) 303, 434, 437, 440, 452, 455, 470
BlsI GCNGC 7 cut(s) 304, 435, 438, 441, 453, 456, 471
BmcAI AGTACT 1 cut(s) 148
Bme1390I CCNGG 1 cut(s) 9
Bme18I GGWCC 1 cut(s) 341
BmgT120I GGNCC 2 cut(s) 341, 398
BmiI GGNNCC 3 cut(s) 6, 342, 399
BmrFI CCNGG 1 cut(s) 9
BmsI GCATC 1 cut(s) 541
BmtI GCTAGC 1 cut(s) 461
BpiI GAAGAC 1 cut(s) 236
BsaWI WCCGGW 1 cut(s) 182
BsaXI ACNNNNNCTCC 2 cut(s) 40, 70
Bsc4I CCNNNNNNNGG 2 cut(s) 65, 161
Bse1I ACTGG 1 cut(s) 100
BseBI CCWGG 1 cut(s) 9
BseGI GGATG 1 cut(s) 664
BseLI CCNNNNNNNGG 2 cut(s) 65, 161
BseMII CTCAG 1 cut(s) 344
BseNI ACTGG 1 cut(s) 100
BseRI GAGGAG 1 cut(s) 84
BseXI GCAGC 5 cut(s) 445, 448, 451, 463, 481
BsgI GTGCAG 1 cut(s) 393
BshFI GGCC 1 cut(s) 400
BshNI GGYRCC 1 cut(s) 4
BsiSI CCGG 2 cut(s) 183, 205
BslI CCNNNNNNNGG 2 cut(s) 65, 161
BsnI GGCC 1 cut(s) 400
Bsp143I GATC 6 cut(s) 75, 130, 345, 583, 651, 676
BspACI CCGC 4 cut(s) 208, 303, 454, 497
BspANI GGCC 1 cut(s) 400
BspCNI CTCAG 1 cut(s) 345
BspLI GGNNCC 3 cut(s) 6, 342, 399
BspMI ACCTGC 1 cut(s) 365
BspOI GCTAGC 1 cut(s) 461
BspPI GGATC 2 cut(s) 83, 684
BspQI GCTCTTC 1 cut(s) 534
BspT107I GGYRCC 1 cut(s) 4
BsrI ACTGG 1 cut(s) 100
BssMI GATC 6 cut(s) 75, 130, 345, 583, 651, 676
Bst2UI CCWGG 1 cut(s) 9
Bst6I CTCTTC 1 cut(s) 534
BstAPI GCANNNNNTGC 1 cut(s) 448
BstC8I GCNNGC 4 cut(s) 314, 459, 465, 639
BstDEI CTNAG 1 cut(s) 353
BstF5I GGATG 1 cut(s) 664
BstHHI GCGC 2 cut(s) 463, 469
BstKTI GATC 6 cut(s) 78, 133, 348, 586, 654, 679
BstMBI GATC 6 cut(s) 75, 130, 345, 583, 651, 676
BstMWI GCNNNNNNNGC 5 cut(s) 439, 448, 460, 469, 478
BstNI CCWGG 1 cut(s) 9
BstSCI CCNGG 1 cut(s) 7
BstSFI CTRYAG 2 cut(s) 387, 418
BstV1I GCAGC 5 cut(s) 445, 448, 451, 463, 481
BstV2I GAAGAC 1 cut(s) 236
BsuRI GGCC 1 cut(s) 400
BtsCI GGATG 1 cut(s) 664
BtsI GCAGTG 1 cut(s) 48
BtsIMutI CAGTG 1 cut(s) 48
BveI ACCTGC 1 cut(s) 365
Cac8I GCNNGC 4 cut(s) 314, 459, 465, 639
CfoI GCGC 2 cut(s) 463, 469
Cfr13I GGNCC 2 cut(s) 341, 398
Csp6I GTAC 3 cut(s) 147, 378, 556
CviAII CATG 5 cut(s) 61, 521, 587, 673, 698
CviJI RGCY 9 cut(s) 45, 138, 153, 172, 275, 297, 400, 457, 641
CviKI_1 RGCY 9 cut(s) 45, 138, 153, 172, 275, 297, 400, 457, 641
CviQI GTAC 3 cut(s) 147, 378, 556
DdeI CTNAG 1 cut(s) 353
DpnI GATC 6 cut(s) 77, 132, 347, 585, 653, 678
DpnII GATC 6 cut(s) 75, 130, 345, 583, 651, 676
Eam1104I CTCTTC 1 cut(s) 534
EarI CTCTTC 1 cut(s) 534
EciI GGCGGA 1 cut(s) 223
Eco47I GGWCC 1 cut(s) 341
EcoO109I RGGNCCY 1 cut(s) 398
EcoRI GAATTC 1 cut(s) 607
EcoRII CCWGG 1 cut(s) 7
FaeI CATG 5 cut(s) 64, 524, 590, 676, 701
FatI CATG 5 cut(s) 60, 520, 586, 672, 697
FauI CCCGC 1 cut(s) 504
FbaI TGATCA 2 cut(s) 130, 583
Fnu4HI GCNGC 7 cut(s) 303, 434, 437, 440, 452, 455, 470
FokI GGATG 1 cut(s) 671
Fsp4HI GCNGC 7 cut(s) 303, 434, 437, 440, 452, 455, 470
FspBI CTAG 5 cut(s) 150, 216, 309, 381, 458
GlaI GCGC 2 cut(s) 462, 468
GluI GCNGC 7 cut(s) 303, 434, 437, 440, 452, 455, 470
HaeIII GGCC 1 cut(s) 400
HapII CCGG 2 cut(s) 183, 205
HhaI GCGC 2 cut(s) 463, 469
Hin1II CATG 5 cut(s) 64, 524, 590, 676, 701
Hin6I GCGC 2 cut(s) 461, 467
HinP1I GCGC 2 cut(s) 461, 467
HindIII AAGCTT 1 cut(s) 43
HinfI GANTC 2 cut(s) 89, 363
HpaII CCGG 2 cut(s) 183, 205
Hpy188I TCNGA 5 cut(s) 88, 135, 345, 354, 362
Hpy188III TCNNGA 3 cut(s) 247, 536, 680
Hpy99I CGWCG 1 cut(s) 607
HpyCH4V TGCA 7 cut(s) 53, 374, 451, 505, 511, 532, 637
HpyF10VI GCNNNNNNNGC 5 cut(s) 439, 448, 460, 469, 478
HpyF3I CTNAG 1 cut(s) 353
Hsp92II CATG 5 cut(s) 64, 524, 590, 676, 701
HspAI GCGC 2 cut(s) 461, 467
Ksp22I TGATCA 2 cut(s) 130, 583
Kzo9I GATC 6 cut(s) 75, 130, 345, 583, 651, 676
LguI GCTCTTC 1 cut(s) 534
LmnI GCTCC 1 cut(s) 25
Lsp1109I GCAGC 5 cut(s) 445, 448, 451, 463, 481
LweI GCATC 1 cut(s) 541
MaeI CTAG 5 cut(s) 150, 216, 309, 381, 458
MaeIII GTNAC 2 cut(s) 124, 422
MalI GATC 6 cut(s) 77, 132, 347, 585, 653, 678
MboI GATC 6 cut(s) 75, 130, 345, 583, 651, 676
MboII GAAGA 3 cut(s) 241, 551, 695
MfeI CAATTG 1 cut(s) 446
MluCI AATT 4 cut(s) 287, 446, 607, 701
MlyI GAGTC 1 cut(s) 372
MmeI TCCRAC 1 cut(s) 550
MnlI CCTC 5 cut(s) 62, 65, 158, 204, 661
MroXI GAANNNNTTC 1 cut(s) 44
MseI TTAA 1 cut(s) 712
MspA1I CMGCKG 1 cut(s) 454
MspI CCGG 2 cut(s) 183, 205
MspR9I CCNGG 1 cut(s) 9
MunI CAATTG 1 cut(s) 446
MvaI CCWGG 1 cut(s) 9
MwoI GCNNNNNNNGC 5 cut(s) 439, 448, 460, 469, 478
NdeII GATC 6 cut(s) 75, 130, 345, 583, 651, 676
NheI GCTAGC 1 cut(s) 457
NlaIII CATG 5 cut(s) 64, 524, 590, 676, 701
NlaIV GGNNCC 3 cut(s) 6, 342, 399
NmuCI GTSAC 1 cut(s) 124
PciSI GCTCTTC 1 cut(s) 534
PcsI WCGNNNNNNNCGW 2 cut(s) 320, 608
PdmI GAANNNNTTC 1 cut(s) 44
PfeI GAWTC 1 cut(s) 89
PkrI GCNGC 7 cut(s) 304, 435, 438, 441, 453, 456, 471
PleI GAGTC 1 cut(s) 371
PpsI GAGTC 1 cut(s) 371
PsiI TTATAA 1 cut(s) 627
Psp6I CCWGG 1 cut(s) 7
PspGI CCWGG 1 cut(s) 7
PspN4I GGNNCC 3 cut(s) 6, 342, 399
PspPI GGNCC 2 cut(s) 341, 398
RsaI GTAC 3 cut(s) 148, 379, 557
RsaNI GTAC 3 cut(s) 147, 378, 556
SapI GCTCTTC 1 cut(s) 534
SaqAI TTAA 1 cut(s) 712
SatI GCNGC 7 cut(s) 303, 434, 437, 440, 452, 455, 470
Sau3AI GATC 6 cut(s) 75, 130, 345, 583, 651, 676
Sau96I GGNCC 2 cut(s) 341, 398
ScaI AGTACT 1 cut(s) 148
SchI GAGTC 1 cut(s) 372
ScrFI CCNGG 1 cut(s) 9
SetI ASST 9 cut(s) 47, 140, 169, 174, 215, 277, 379, 643, 672
SfaNI GCATC 1 cut(s) 541
SfcI CTRYAG 2 cut(s) 387, 418
SinI GGWCC 1 cut(s) 341
SpeI ACTAGT 1 cut(s) 380
Sse9I AATT 4 cut(s) 287, 446, 607, 701
SsiI CCGC 4 cut(s) 208, 303, 454, 497
SspMI CTAG 5 cut(s) 150, 216, 309, 381, 458
StyD4I CCNGG 1 cut(s) 7
TaqI TCGA 3 cut(s) 271, 605, 611
TasI AATT 4 cut(s) 287, 446, 607, 701
TatI WGTACW 1 cut(s) 146
TauI GCSGC 2 cut(s) 305, 457
TfiI GAWTC 1 cut(s) 89
Tru1I TTAA 1 cut(s) 712
Tru9I TTAA 1 cut(s) 712
TscAI CASTG 1 cut(s) 55
TseFI GTSAC 1 cut(s) 124
TseI GCWGC 5 cut(s) 433, 436, 439, 451, 469
Tsp45I GTSAC 1 cut(s) 124
TspDTI ATGAA 5 cut(s) 72, 77, 130, 584, 714
TspRI CASTG 1 cut(s) 55
VpaK11BI GGWCC 1 cut(s) 341
XapI RAATTY 1 cut(s) 607
XmnI GAANNNNTTC 1 cut(s) 44
XspI CTAG 5 cut(s) 150, 216, 309, 381, 458
ZrmI AGTACT 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.