RchiOBHm_Chr5g0020711

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0013637
Physical Location & Seq
Forward (+)
14979649 .. 14980539
891 bp
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UTR
Exon/CDS
Intron
PRQ30078

Sequence Viewer

Length: 708 bp
ATGGTGCCTGGTTCTAATGAGTGGGAGCAATACTACCAGAAAAGCTTCACTGCAACTCCCATGAATGGAGGAGGGATCATTTCATCAGATTCAACTGGTGTGACAACAAGTAGTAGTGCTGTTGTGACTGATCAGAGCTTCATCAGTACCAGCCCCAATAATGGAGGTCAGCTAACTCCTACCGGAAGTGTAGCGAAACCAATCCGGCGGAGGTCTAGGGTTTCCAAGAAGACCCCCATCACTCTCCTGAACGCCAACGCCAACAACTTTCGAGCTTTGGTTCAACAATTCACAGGCTGTGCCGCTTCTAGCACGCCCATTTCTTTCGGCAACCAAAAGGGTCCGATCAATCTGAGTTTCGGAGTCAATAGTGCAGGTACTAGTTCTGTAGTTATGGCGCCTTTTGAAAATCCCAACTATAGTTACAACCAGCAGCAGCAGCAGCAACAATTGCAGCGGCTAGCGCAAGCACAGCAACAACAACGACACCCGCTACTGCAACTGCAAGAAAACCATGTCCAACTGCATCAAGAAGAGCAACAGCGTATGTACCCGTTTGATAATGTTAGTGGTAGTGACCATGTGTTTCATTATTCGTCGAATTCGAGTAGTTCTGGTTATAATCCTATGCAAGCTGGTATGGAGATCGGGGATGGGTTTGAGGTCATGGATCAGGAAGATATATCTTTACATGAATTGCTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

235

Amino Acids

25.72

Weight (kDa)

5.63

Isoelectric Point (pI)

51.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 81 - 102 2.5e-07 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 621
Acc36I ACCTGC 1 cut(s) 365
AccB1I GGYRCC 2 cut(s) 4, 397
AciI CCGC 4 cut(s) 208, 303, 457, 491
AclWI GGATC 2 cut(s) 83, 678
AcsI RAATTY 1 cut(s) 601
AcyI GRCGYC 1 cut(s) 398
AfaI GTAC 3 cut(s) 148, 379, 551
AfiI CCNNNNNNNGG 2 cut(s) 65, 161
AgsI TTSAA 3 cut(s) 93, 284, 407
AhlI ACTAGT 1 cut(s) 380
AjnI CCWGG 1 cut(s) 7
AluBI AGCT 5 cut(s) 45, 138, 172, 275, 635
AluI AGCT 5 cut(s) 45, 138, 172, 275, 635
AlwI GGATC 2 cut(s) 83, 678
ApeKI GCWGC 5 cut(s) 433, 436, 439, 442, 454
ApoI RAATTY 1 cut(s) 601
Asp700I GAANNNNTTC 1 cut(s) 44
AspLEI GCGC 2 cut(s) 400, 466
AspS9I GGNCC 1 cut(s) 341
AsuNHI GCTAGC 1 cut(s) 460
AvaII GGWCC 1 cut(s) 341
BanI GGYRCC 2 cut(s) 4, 397
BbsI GAAGAC 1 cut(s) 236
BbvI GCAGC 5 cut(s) 445, 448, 451, 454, 466
BccI CCATC 2 cut(s) 245, 647
BciT130I CCWGG 1 cut(s) 9
BclI TGATCA 1 cut(s) 130
BcuI ACTAGT 1 cut(s) 380
BfaI CTAG 4 cut(s) 216, 309, 381, 461
BfmI CTRYAG 2 cut(s) 387, 418
BfoI RGCGCY 1 cut(s) 401
BfuAI ACCTGC 1 cut(s) 365
BisI GCNGC 7 cut(s) 303, 434, 437, 440, 443, 455, 458
BlsI GCNGC 7 cut(s) 304, 435, 438, 441, 444, 456, 459
Bme1390I CCNGG 1 cut(s) 9
Bme18I GGWCC 1 cut(s) 341
BmgT120I GGNCC 1 cut(s) 341
BmiI GGNNCC 3 cut(s) 6, 342, 399
BmrFI CCNGG 1 cut(s) 9
BmsI GCATC 1 cut(s) 535
BmtI GCTAGC 1 cut(s) 464
BpiI GAAGAC 1 cut(s) 236
BsaHI GRCGYC 1 cut(s) 398
BsaWI WCCGGW 1 cut(s) 182
BsaXI ACNNNNNCTCC 2 cut(s) 40, 70
Bsc4I CCNNNNNNNGG 2 cut(s) 65, 161
Bse1I ACTGG 1 cut(s) 100
BseBI CCWGG 1 cut(s) 9
BseGI GGATG 1 cut(s) 658
BseLI CCNNNNNNNGG 2 cut(s) 65, 161
BseMII CTCAG 1 cut(s) 344
BseNI ACTGG 1 cut(s) 100
BseRI GAGGAG 1 cut(s) 84
BseXI GCAGC 5 cut(s) 445, 448, 451, 454, 466
BsgI GTGCAG 1 cut(s) 393
BshNI GGYRCC 2 cut(s) 4, 397
BsiSI CCGG 2 cut(s) 183, 205
BslI CCNNNNNNNGG 2 cut(s) 65, 161
Bsp143I GATC 5 cut(s) 75, 130, 345, 645, 670
BspACI CCGC 4 cut(s) 208, 303, 457, 491
BspCNI CTCAG 1 cut(s) 345
BspLI GGNNCC 3 cut(s) 6, 342, 399
BspMI ACCTGC 1 cut(s) 365
BspOI GCTAGC 1 cut(s) 464
BspPI GGATC 2 cut(s) 83, 678
BspQI GCTCTTC 1 cut(s) 528
BspT107I GGYRCC 2 cut(s) 4, 397
BsrI ACTGG 1 cut(s) 100
BssMI GATC 5 cut(s) 75, 130, 345, 645, 670
BssNI GRCGYC 1 cut(s) 398
Bst2UI CCWGG 1 cut(s) 9
Bst6I CTCTTC 1 cut(s) 528
BstACI GRCGYC 1 cut(s) 398
BstAPI GCANNNNNTGC 1 cut(s) 451
BstC8I GCNNGC 4 cut(s) 314, 462, 468, 633
BstDEI CTNAG 1 cut(s) 353
BstF5I GGATG 1 cut(s) 658
BstH2I RGCGCY 1 cut(s) 401
BstHHI GCGC 2 cut(s) 400, 466
BstKTI GATC 5 cut(s) 78, 133, 348, 648, 673
BstMBI GATC 5 cut(s) 75, 130, 345, 645, 670
BstMWI GCNNNNNNNGC 5 cut(s) 439, 442, 451, 463, 472
BstNI CCWGG 1 cut(s) 9
BstSCI CCNGG 1 cut(s) 7
BstSFI CTRYAG 2 cut(s) 387, 418
BstV1I GCAGC 5 cut(s) 445, 448, 451, 454, 466
BstV2I GAAGAC 1 cut(s) 236
BtsCI GGATG 1 cut(s) 658
BtsI GCAGTG 1 cut(s) 48
BtsIMutI CAGTG 1 cut(s) 48
BveI ACCTGC 1 cut(s) 365
Cac8I GCNNGC 4 cut(s) 314, 462, 468, 633
CfoI GCGC 2 cut(s) 400, 466
Cfr13I GGNCC 1 cut(s) 341
Csp6I GTAC 3 cut(s) 147, 378, 550
CviAII CATG 5 cut(s) 61, 515, 581, 667, 692
CviJI RGCY 8 cut(s) 45, 138, 153, 172, 275, 297, 460, 635
CviKI_1 RGCY 8 cut(s) 45, 138, 153, 172, 275, 297, 460, 635
CviQI GTAC 3 cut(s) 147, 378, 550
DdeI CTNAG 1 cut(s) 353
DinI GGCGCC 1 cut(s) 399
DpnI GATC 5 cut(s) 77, 132, 347, 647, 672
DpnII GATC 5 cut(s) 75, 130, 345, 645, 670
Eam1104I CTCTTC 1 cut(s) 528
EarI CTCTTC 1 cut(s) 528
EciI GGCGGA 1 cut(s) 223
Eco47I GGWCC 1 cut(s) 341
EcoRI GAATTC 1 cut(s) 601
EcoRII CCWGG 1 cut(s) 7
EgeI GGCGCC 1 cut(s) 399
EheI GGCGCC 1 cut(s) 399
FaeI CATG 5 cut(s) 64, 518, 584, 670, 695
FatI CATG 5 cut(s) 60, 514, 580, 666, 691
FauI CCCGC 1 cut(s) 498
FbaI TGATCA 1 cut(s) 130
Fnu4HI GCNGC 7 cut(s) 303, 434, 437, 440, 443, 455, 458
FokI GGATG 1 cut(s) 665
Fsp4HI GCNGC 7 cut(s) 303, 434, 437, 440, 443, 455, 458
FspBI CTAG 4 cut(s) 216, 309, 381, 461
GlaI GCGC 2 cut(s) 399, 465
GluI GCNGC 7 cut(s) 303, 434, 437, 440, 443, 455, 458
HaeII RGCGCY 1 cut(s) 401
HapII CCGG 2 cut(s) 183, 205
HhaI GCGC 2 cut(s) 400, 466
Hin1I GRCGYC 1 cut(s) 398
Hin1II CATG 5 cut(s) 64, 518, 584, 670, 695
Hin6I GCGC 2 cut(s) 398, 464
HinP1I GCGC 2 cut(s) 398, 464
HindIII AAGCTT 1 cut(s) 43
HinfI GANTC 2 cut(s) 89, 363
HpaII CCGG 2 cut(s) 183, 205
Hpy188I TCNGA 5 cut(s) 88, 135, 345, 354, 362
Hpy188III TCNNGA 3 cut(s) 247, 530, 674
Hpy99I CGWCG 1 cut(s) 601
HpyCH4V TGCA 7 cut(s) 53, 374, 454, 499, 505, 526, 631
HpyF10VI GCNNNNNNNGC 5 cut(s) 439, 442, 451, 463, 472
HpyF3I CTNAG 1 cut(s) 353
Hsp92I GRCGYC 1 cut(s) 398
Hsp92II CATG 5 cut(s) 64, 518, 584, 670, 695
HspAI GCGC 2 cut(s) 398, 464
KasI GGCGCC 1 cut(s) 397
Ksp22I TGATCA 1 cut(s) 130
Kzo9I GATC 5 cut(s) 75, 130, 345, 645, 670
LguI GCTCTTC 1 cut(s) 528
LmnI GCTCC 1 cut(s) 25
Lsp1109I GCAGC 5 cut(s) 445, 448, 451, 454, 466
LweI GCATC 1 cut(s) 535
MaeI CTAG 4 cut(s) 216, 309, 381, 461
MaeIII GTNAC 4 cut(s) 100, 124, 422, 575
MalI GATC 5 cut(s) 77, 132, 347, 647, 672
MboI GATC 5 cut(s) 75, 130, 345, 645, 670
MboII GAAGA 3 cut(s) 241, 545, 689
MfeI CAATTG 1 cut(s) 449
MluCI AATT 4 cut(s) 287, 449, 601, 695
Mly113I GGCGCC 1 cut(s) 398
MlyI GAGTC 1 cut(s) 372
MmeI TCCRAC 1 cut(s) 544
MnlI CCTC 5 cut(s) 62, 65, 158, 204, 655
MroXI GAANNNNTTC 1 cut(s) 44
MseI TTAA 1 cut(s) 706
MspA1I CMGCKG 1 cut(s) 457
MspI CCGG 2 cut(s) 183, 205
MspR9I CCNGG 1 cut(s) 9
MunI CAATTG 1 cut(s) 449
MvaI CCWGG 1 cut(s) 9
MwoI GCNNNNNNNGC 5 cut(s) 439, 442, 451, 463, 472
NarI GGCGCC 1 cut(s) 398
NdeII GATC 5 cut(s) 75, 130, 345, 645, 670
NheI GCTAGC 1 cut(s) 460
NlaIII CATG 5 cut(s) 64, 518, 584, 670, 695
NlaIV GGNNCC 3 cut(s) 6, 342, 399
NmuCI GTSAC 3 cut(s) 100, 124, 575
PciSI GCTCTTC 1 cut(s) 528
PcsI WCGNNNNNNNCGW 1 cut(s) 602
PdmI GAANNNNTTC 1 cut(s) 44
PfeI GAWTC 1 cut(s) 89
PkrI GCNGC 7 cut(s) 304, 435, 438, 441, 444, 456, 459
PleI GAGTC 1 cut(s) 371
PluTI GGCGCC 1 cut(s) 401
PpsI GAGTC 1 cut(s) 371
PsiI TTATAA 1 cut(s) 621
Psp6I CCWGG 1 cut(s) 7
PspGI CCWGG 1 cut(s) 7
PspN4I GGNNCC 3 cut(s) 6, 342, 399
PspPI GGNCC 1 cut(s) 341
RsaI GTAC 3 cut(s) 148, 379, 551
RsaNI GTAC 3 cut(s) 147, 378, 550
SapI GCTCTTC 1 cut(s) 528
SaqAI TTAA 1 cut(s) 706
SatI GCNGC 7 cut(s) 303, 434, 437, 440, 443, 455, 458
Sau3AI GATC 5 cut(s) 75, 130, 345, 645, 670
Sau96I GGNCC 1 cut(s) 341
SchI GAGTC 1 cut(s) 372
ScrFI CCNGG 1 cut(s) 9
SetI ASST 9 cut(s) 47, 140, 169, 174, 215, 277, 379, 637, 666
SfaNI GCATC 1 cut(s) 535
SfcI CTRYAG 2 cut(s) 387, 418
SfoI GGCGCC 1 cut(s) 399
SinI GGWCC 1 cut(s) 341
SpeI ACTAGT 1 cut(s) 380
Sse9I AATT 4 cut(s) 287, 449, 601, 695
SsiI CCGC 4 cut(s) 208, 303, 457, 491
SspDI GGCGCC 1 cut(s) 397
SspMI CTAG 4 cut(s) 216, 309, 381, 461
StyD4I CCNGG 1 cut(s) 7
TaqI TCGA 3 cut(s) 271, 599, 605
TasI AATT 4 cut(s) 287, 449, 601, 695
TauI GCSGC 2 cut(s) 305, 460
TfiI GAWTC 1 cut(s) 89
Tru1I TTAA 1 cut(s) 706
Tru9I TTAA 1 cut(s) 706
TscAI CASTG 1 cut(s) 55
TseFI GTSAC 3 cut(s) 100, 124, 575
TseI GCWGC 5 cut(s) 433, 436, 439, 442, 454
Tsp45I GTSAC 3 cut(s) 100, 124, 575
TspDTI ATGAA 5 cut(s) 72, 77, 130, 578, 708
TspRI CASTG 1 cut(s) 55
VpaK11BI GGWCC 1 cut(s) 341
XapI RAATTY 1 cut(s) 601
XmnI GAANNNNTTC 1 cut(s) 44
XspI CTAG 4 cut(s) 216, 309, 381, 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.